Guide to the Human Genome
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Name: LOC100134103 Sequence: fasta or formatted (271aa) NCBI GI: 169194717
Description:

PREDICTED: similar to Na+/H+ exchanger domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         21           3
 C cysteine            1.8          5           1
 D aspartate           1.5          4           2
 E glutamate           2.6          7           2
 F phenylalanine       6.3         17           2
 G glycine             8.9         24           2
 H histidine           1.8          5           1
 I isoleucine          9.2         25           2
 K lysine              3.3          9           2
 L leucine            14.8         40           2
 M methionine          3.7         10           2
 N asparagine          4.8         13           2
 P proline             4.8         13           2
 Q glutamine           2.2          6           1
 R arginine            3.3          9           1
 S serine              7.7         21           2
 T threonine           3.7         10           2
 V valine              8.1         22           4
 W tryptophan          2.2          6           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Na+/H+ exchanger domain conta... 
NHEDC1                0.872   Na+/H+ exchanger domain containing 1 isoform 2 [Hom...
NHEDC1                0.872   Na+/H+ exchanger domain containing 1 isoform 1 [Homo...
NHEDC2                0.560   Na+/H+ exchanger domain containing 2 
LOC653097             0.121   PREDICTED: similar to hCG1988827 
LOC653097             0.121   PREDICTED: similar to hCG1988827 
SLC24A1               0.014   solute carrier family 24 (sodium/potassium/calcium ex...
TAS2R38               0.010   taste receptor, type 2, member 38 
IDH3G                 0.008   isocitrate dehydrogenase 3 (NAD+) gamma isoform b pr...
IDH3G                 0.008   isocitrate dehydrogenase 3 (NAD+) gamma isoform a pre...
PKD1L2                0.006   polycystin 1-like 2 isoform a 
TAS2R4                0.006   taste receptor T2R4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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