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Search of human proteins with 4580424
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4580424 paired box gene 6 isoform b [Homo sapiens]
(436 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 889 0.0
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 852 0.0
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 852 0.0
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 252 4e-67
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 250 2e-66
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 247 1e-65
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 247 1e-65
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 245 5e-65
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 245 5e-65
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 245 5e-65
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 244 9e-65
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 244 9e-65
gi|170784824 paired box 4 [Homo sapiens] 235 7e-62
gi|34878709 paired box protein 2 isoform c [Homo sapiens] 230 2e-60
gi|34878716 paired box protein 2 isoform d [Homo sapiens] 226 4e-59
gi|34878701 paired box protein 2 isoform b [Homo sapiens] 226 4e-59
gi|34878699 paired box protein 2 isoform a [Homo sapiens] 220 2e-57
gi|34878703 paired box protein 2 isoform e [Homo sapiens] 220 2e-57
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens] 217 1e-56
gi|9951920 paired box 5 [Homo sapiens] 215 6e-56
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens] 213 4e-55
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens] 213 4e-55
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 213 4e-55
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] 213 4e-55
gi|197276661 paired box 1 [Homo sapiens] 173 3e-43
gi|7242167 paired box 9 [Homo sapiens] 172 7e-43
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens] 164 2e-40
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens] 164 2e-40
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 109 4e-24
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 108 1e-23
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 889 bits (2297), Expect = 0.0
Identities = 436/436 (100%), Positives = 436/436 (100%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL
Sbjct: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT
Sbjct: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
Query: 181 SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE 240
SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE
Sbjct: 181 SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE 240
Query: 241 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 300
KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP
Sbjct: 241 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 300
Query: 301 ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP 360
ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP
Sbjct: 301 ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP 360
Query: 361 VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ 420
VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ
Sbjct: 361 VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ 420
Query: 421 VPGSEPDMSQYWPRLQ 436
VPGSEPDMSQYWPRLQ
Sbjct: 421 VPGSEPDMSQYWPRLQ 436
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 852 bits (2200), Expect = 0.0
Identities = 422/436 (96%), Positives = 422/436 (96%), Gaps = 14/436 (3%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQ
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQ------------- 47
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL
Sbjct: 48 -VSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 106
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT
Sbjct: 107 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 166
Query: 181 SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE 240
SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE
Sbjct: 167 SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE 226
Query: 241 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 300
KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP
Sbjct: 227 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 286
Query: 301 ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP 360
ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP
Sbjct: 287 ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP 346
Query: 361 VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ 420
VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ
Sbjct: 347 VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ 406
Query: 421 VPGSEPDMSQYWPRLQ 436
VPGSEPDMSQYWPRLQ
Sbjct: 407 VPGSEPDMSQYWPRLQ 422
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 852 bits (2200), Expect = 0.0
Identities = 422/436 (96%), Positives = 422/436 (96%), Gaps = 14/436 (3%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQ
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQ------------- 47
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL
Sbjct: 48 -VSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 106
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT
Sbjct: 107 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 166
Query: 181 SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE 240
SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE
Sbjct: 167 SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE 226
Query: 241 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 300
KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP
Sbjct: 227 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 286
Query: 301 ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP 360
ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP
Sbjct: 287 ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP 346
Query: 361 VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ 420
VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ
Sbjct: 347 VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ 406
Query: 421 VPGSEPDMSQYWPRLQ 436
VPGSEPDMSQYWPRLQ
Sbjct: 407 VPGSEPDMSQYWPRLQ 422
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 252 bits (644), Expect = 4e-67
Identities = 179/463 (38%), Positives = 230/463 (49%), Gaps = 95/463 (20%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKPR VATP+V KI +YKRE P +F+WEIRDRLL +G C
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHC 143
Query: 127 TNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 186
+PSVSSI+RVLR +K++
Sbjct: 144 DRSTVPSVSSISRVLRIKFGKKEE------------------------------------ 167
Query: 187 TQDGCQQQEGGGENTNSISSNG----------EDSD-EAQMRLQLKRKLQRNRTSFTQEQ 235
+D ++E GE S +G E SD E++ L LKRK +R+RT+FT EQ
Sbjct: 168 -EDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQ 226
Query: 236 IEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNT 295
+E LEK FERTHYPD++ RE LA + L EAR+QVWFSNRRA+WR++
Sbjct: 227 LEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLL 286
Query: 296 PSHIPISSSFSTSVYQPIPQPTTPVSSFT--SGSMLGRTD---------------TALTN 338
P P + + YQ +P T P ++ + GS + R A +
Sbjct: 287 PGGFPPTGMPTLPPYQ-LPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAAD 345
Query: 339 TYSALPPMPSFTMANNLPMQPPVPSQTSS--YSCMLPTSPSVNGRSYDTYTPPHMQTHMN 396
T SA SF+ ++ M P PS + + + P S+ G + PP Q +
Sbjct: 346 TSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGN--PSAVPPQPQADFS 403
Query: 397 SQPM--GTSGTTSTGL--------ISPGVSVPVQVPGSEPDMS 429
P+ G TS I PG S+P P S
Sbjct: 404 ISPLHGGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYS 446
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 250 bits (638), Expect = 2e-66
Identities = 166/423 (39%), Positives = 227/423 (53%), Gaps = 66/423 (15%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCT 127
SKIL RY ETGSIRP AIGGSKP+V TP+V KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 143
Query: 128 NDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPT 187
+ +PSVSSI+R+LR+ + ++ AD L + + + S+ G +
Sbjct: 144 RNTVPSVSSISRILRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILS 192
Query: 188 QDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTH 247
+ Q S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERTH
Sbjct: 193 ERASAPQ----------SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTH 241
Query: 248 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPIS 302
YPD++ RE LA + L EAR+QVWFSNRRA+WR++ N P+ +P
Sbjct: 242 YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTL 301
Query: 303 SSF--STSVYQP--IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQ 358
++ S + YQP IPQ + SS + P PS + +P
Sbjct: 302 PTYQLSETSYQPTSIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSN 346
Query: 359 PPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSV 417
P SS + LP++ D++ PP ++ + +G + GL++ V
Sbjct: 347 P-----DSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGV 401
Query: 418 PVQ 420
P Q
Sbjct: 402 PHQ 404
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 247 bits (631), Expect = 1e-65
Identities = 179/465 (38%), Positives = 230/465 (49%), Gaps = 97/465 (20%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKPR VATP+V KI +YKRE P +F+WEIRDRLL +G C
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHC 143
Query: 127 TNDNIPS--VSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPG 184
+PS VSSI+RVLR +K++
Sbjct: 144 DRSTVPSGLVSSISRVLRIKFGKKEE---------------------------------- 169
Query: 185 QPTQDGCQQQEGGGENTNSISSNG----------EDSD-EAQMRLQLKRKLQRNRTSFTQ 233
+D ++E GE S +G E SD E++ L LKRK +R+RT+FT
Sbjct: 170 ---EDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTA 226
Query: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
EQ+E LEK FERTHYPD++ RE LA + L EAR+QVWFSNRRA+WR++
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 294 NTPSHIPISSSFSTSVYQPIPQPTTPVSSFT--SGSMLGRTD---------------TAL 336
P P + + YQ +P T P ++ + GS + R A
Sbjct: 287 LLPGGFPPTGMPTLPPYQ-LPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAA 345
Query: 337 TNTYSALPPMPSFTMANNLPMQPPVPSQTSS--YSCMLPTSPSVNGRSYDTYTPPHMQTH 394
+T SA SF+ ++ M P PS + + + P S+ G + PP Q
Sbjct: 346 ADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGN--PSAVPPQPQAD 403
Query: 395 MNSQPM--GTSGTTSTGL--------ISPGVSVPVQVPGSEPDMS 429
+ P+ G TS I PG S+P P S
Sbjct: 404 FSISPLHGGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYS 448
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 247 bits (631), Expect = 1e-65
Identities = 179/465 (38%), Positives = 230/465 (49%), Gaps = 97/465 (20%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKPR VATP+V KI +YKRE P +F+WEIRDRLL +G C
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHC 143
Query: 127 TNDNIPS--VSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPG 184
+PS VSSI+RVLR +K++
Sbjct: 144 DRSTVPSGLVSSISRVLRIKFGKKEE---------------------------------- 169
Query: 185 QPTQDGCQQQEGGGENTNSISSNG----------EDSD-EAQMRLQLKRKLQRNRTSFTQ 233
+D ++E GE S +G E SD E++ L LKRK +R+RT+FT
Sbjct: 170 ---EDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTA 226
Query: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
EQ+E LEK FERTHYPD++ RE LA + L EAR+QVWFSNRRA+WR++
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 294 NTPSHIPISSSFSTSVYQPIPQPTTPVSSFT--SGSMLGRTD---------------TAL 336
P P + + YQ +P T P ++ + GS + R A
Sbjct: 287 LLPGGFPPTGMPTLPPYQ-LPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAA 345
Query: 337 TNTYSALPPMPSFTMANNLPMQPPVPSQTSS--YSCMLPTSPSVNGRSYDTYTPPHMQTH 394
+T SA SF+ ++ M P PS + + + P S+ G + PP Q
Sbjct: 346 ADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGN--PSAVPPQPQAD 403
Query: 395 MNSQPM--GTSGTTSTGL--------ISPGVSVPVQVPGSEPDMS 429
+ P+ G TS I PG S+P P S
Sbjct: 404 FSISPLHGGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYS 448
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 245 bits (626), Expect = 5e-65
Identities = 166/424 (39%), Positives = 227/424 (53%), Gaps = 67/424 (15%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVC 143
Query: 127 TNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 186
+ +PSVSSI+R+LR+ + ++ AD L + + + S+ G
Sbjct: 144 DRNTVPSVSSISRILRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGIL 192
Query: 187 TQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERT 246
++ Q S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERT
Sbjct: 193 SERASAPQ----------SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 247 HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPI 301
HYPD++ RE LA + L EAR+QVWFSNRRA+WR++ N P+ +P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 SSSF--STSVYQP--IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPM 357
++ S + YQP IPQ + SS + P PS + +P
Sbjct: 302 LPTYQLSETSYQPTSIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPS 346
Query: 358 QPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVS 416
P SS + LP++ D++ PP ++ + +G + GL++
Sbjct: 347 NP-----DSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
Query: 417 VPVQ 420
VP Q
Sbjct: 402 VPHQ 405
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 245 bits (626), Expect = 5e-65
Identities = 166/424 (39%), Positives = 227/424 (53%), Gaps = 67/424 (15%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVC 143
Query: 127 TNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 186
+ +PSVSSI+R+LR+ + ++ AD L + + + S+ G
Sbjct: 144 DRNTVPSVSSISRILRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGIL 192
Query: 187 TQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERT 246
++ Q S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERT
Sbjct: 193 SERASAPQ----------SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 247 HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPI 301
HYPD++ RE LA + L EAR+QVWFSNRRA+WR++ N P+ +P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 SSSF--STSVYQP--IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPM 357
++ S + YQP IPQ + SS + P PS + +P
Sbjct: 302 LPTYQLSETSYQPTSIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPS 346
Query: 358 QPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVS 416
P SS + LP++ D++ PP ++ + +G + GL++
Sbjct: 347 NP-----DSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
Query: 417 VPVQ 420
VP Q
Sbjct: 402 VPHQ 405
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 245 bits (626), Expect = 5e-65
Identities = 166/424 (39%), Positives = 227/424 (53%), Gaps = 67/424 (15%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVC 143
Query: 127 TNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 186
+ +PSVSSI+R+LR+ + ++ AD L + + + S+ G
Sbjct: 144 DRNTVPSVSSISRILRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGIL 192
Query: 187 TQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERT 246
++ Q S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERT
Sbjct: 193 SERASAPQ----------SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 247 HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPI 301
HYPD++ RE LA + L EAR+QVWFSNRRA+WR++ N P+ +P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 SSSF--STSVYQP--IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPM 357
++ S + YQP IPQ + SS + P PS + +P
Sbjct: 302 LPTYQLSETSYQPTSIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPS 346
Query: 358 QPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVS 416
P SS + LP++ D++ PP ++ + +G + GL++
Sbjct: 347 NP-----DSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
Query: 417 VPVQ 420
VP Q
Sbjct: 402 VPHQ 405
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 244 bits (624), Expect = 9e-65
Identities = 160/392 (40%), Positives = 214/392 (54%), Gaps = 66/392 (16%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVC 143
Query: 127 TNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 186
+ +PSVSSI+R+LR+ + ++ AD L + + + S+ G
Sbjct: 144 DRNTVPSVSSISRILRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGIL 192
Query: 187 TQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERT 246
++ Q S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERT
Sbjct: 193 SERASAPQ----------SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 247 HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPI 301
HYPD++ RE LA + L EAR+QVWFSNRRA+WR++ N P+ +P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 SSSF--STSVYQP--IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPM 357
++ S + YQP IPQ + SS + P PS + +P
Sbjct: 302 LPTYQLSETSYQPTSIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPS 346
Query: 358 QPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPP 389
P SS + LP++ D++ PP
Sbjct: 347 NP-----DSSSAYCLPSTRHGFSSYTDSFVPP 373
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 244 bits (624), Expect = 9e-65
Identities = 160/392 (40%), Positives = 214/392 (54%), Gaps = 66/392 (16%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVC 143
Query: 127 TNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 186
+ +PSVSSI+R+LR+ + ++ AD L + + + S+ G
Sbjct: 144 DRNTVPSVSSISRILRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGIL 192
Query: 187 TQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERT 246
++ Q S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERT
Sbjct: 193 SERASAPQ----------SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 247 HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPI 301
HYPD++ RE LA + L EAR+QVWFSNRRA+WR++ N P+ +P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 SSSF--STSVYQP--IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPM 357
++ S + YQP IPQ + SS + P PS + +P
Sbjct: 302 LPTYQLSETSYQPTSIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPS 346
Query: 358 QPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPP 389
P SS + LP++ D++ PP
Sbjct: 347 NP-----DSSSAYCLPSTRHGFSSYTDSFVPP 373
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 235 bits (599), Expect = 7e-62
Identities = 139/283 (49%), Positives = 166/283 (58%), Gaps = 63/283 (22%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
+NQLGG+FVNGRPLP TRQ+IV LA SG RPCDISRIL+ VSNGCV
Sbjct: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILK--------------VSNGCV 46
Query: 68 SKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCT 127
SKILGRYY TG + P+ IGGSKPR+ATP VV++IAQ K ECP++FAWEI+ +L +EG+CT
Sbjct: 47 SKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCT 106
Query: 128 NDNIPSVSSINRVLRNLASEKQQMGADGMYDKL----RMLNGQTGSWGTRPGWYPGTSVP 183
D PSVSSINRVLR L E Q + + +L +GS T G +PGT
Sbjct: 107 QDKTPSVSSINRVLRAL-QEDQGLPCTRLRSPAVLAPAVLTPHSGS-ETPRGTHPGTG-- 162
Query: 184 GQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEF 243
RNRT F+ Q EALEKEF
Sbjct: 163 -----------------------------------------HRNRTIFSPSQAEALEKEF 181
Query: 244 ERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 286
+R YPD AR +LA LPE ++VWFSNRRAKWRR+EKL+
Sbjct: 182 QRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLK 224
>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
Length = 396
Score = 230 bits (586), Expect = 2e-60
Identities = 165/415 (39%), Positives = 211/415 (50%), Gaps = 56/415 (13%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------- 59
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRL
Sbjct: 60 -VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
L+EG+C ND +PSVSSINR++R + DG G+ T PG T
Sbjct: 119 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPG---HT 164
Query: 181 SVP--GQPTQDGCQQQEGGGENTNSI----SSNGE----DSD---------EAQMRLQLK 221
VP P G + N I SNGE D D ++Q +
Sbjct: 165 IVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSL 224
Query: 222 RKLQRNRTSFTQEQIEALEKEFERTHYPDVF-ARERLAA----KIDLPEARIQVWFSNRR 276
RK R T FTQ+Q+EAL++ FER YPDVF A E + + + LP +
Sbjct: 225 RKHLRADT-FTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSS 283
Query: 277 AKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTAL 336
+L + P + +T P P T S+ + ++ G A
Sbjct: 284 LSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAA 343
Query: 337 TNTYSALPPMPSFTMANNLP-MQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPH 390
S+L P +A P +QP S ++ + T P+ R D+ TPP+
Sbjct: 344 VGPSSSLMSKPGRKLAEVPPCVQPTGASSPATRTATPSTRPTT--RLGDSATPPY 396
>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
Length = 408
Score = 226 bits (575), Expect = 4e-59
Identities = 137/271 (50%), Positives = 162/271 (59%), Gaps = 48/271 (17%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------- 59
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRL
Sbjct: 60 -VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
L+EG+C ND +PSVSSINR++R + DG G+ T PG T
Sbjct: 119 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPG---HT 164
Query: 181 SVP--GQPTQDGCQQQEGGGENTNSI----SSNGE----DSD---------EAQMRLQLK 221
VP P G + N I SNGE D D ++Q +
Sbjct: 165 IVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSL 224
Query: 222 RKLQRNRTSFTQEQIEALEKEFERTHYPDVF 252
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 225 RKHLRADT-FTQQQLEALDRVFERPSYPDVF 254
>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
Length = 393
Score = 226 bits (575), Expect = 4e-59
Identities = 137/271 (50%), Positives = 162/271 (59%), Gaps = 48/271 (17%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------- 59
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRL
Sbjct: 60 -VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
L+EG+C ND +PSVSSINR++R + DG G+ T PG T
Sbjct: 119 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPG---HT 164
Query: 181 SVP--GQPTQDGCQQQEGGGENTNSI----SSNGE----DSD---------EAQMRLQLK 221
VP P G + N I SNGE D D ++Q +
Sbjct: 165 IVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSL 224
Query: 222 RKLQRNRTSFTQEQIEALEKEFERTHYPDVF 252
RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 225 RKHLRADT-FTQQQLEALDRVFERPSYPDVF 254
>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
Length = 416
Score = 220 bits (560), Expect = 2e-57
Identities = 134/291 (46%), Positives = 165/291 (56%), Gaps = 65/291 (22%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------- 59
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRL
Sbjct: 60 -VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGW--YP 178
L+EG+C ND +PSVSSINR++R + DG G+ T PG P
Sbjct: 119 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIVP 167
Query: 179 GTSVP-------------------GQPTQDGCQQQ-------------EGGGE-----NT 201
T+ P G P +G +++ GGG
Sbjct: 168 STASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTL 227
Query: 202 NSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 252
+S + ++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 228 RDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 277
>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
Length = 431
Score = 220 bits (560), Expect = 2e-57
Identities = 134/291 (46%), Positives = 165/291 (56%), Gaps = 65/291 (22%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------- 59
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRL
Sbjct: 60 -VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGW--YP 178
L+EG+C ND +PSVSSINR++R + DG G+ T PG P
Sbjct: 119 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIVP 167
Query: 179 GTSVP-------------------GQPTQDGCQQQ-------------EGGGE-----NT 201
T+ P G P +G +++ GGG
Sbjct: 168 STASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTL 227
Query: 202 NSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 252
+S + ++Q + RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 228 RDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 277
>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
Length = 450
Score = 217 bits (553), Expect = 1e-56
Identities = 154/425 (36%), Positives = 206/425 (48%), Gaps = 82/425 (19%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR------------- 52
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRL
Sbjct: 53 -VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRL 111
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
L+EGVC ND +PSVSSINR++R + + D + G T P +
Sbjct: 112 LAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSS 163
Query: 181 SV--PGQPTQDGCQQQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------ 227
+V P P D G S +DSD+ RL + + +
Sbjct: 164 AVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHL 223
Query: 228 RT-SFTQEQIEALEKEFERTHYPDVFAR------ERLAAKIDLPEARIQVWFSNRRAKWR 280
RT +F+Q +E LE FER HYP+ +A E+ + L + +
Sbjct: 224 RTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNSTL------------ 271
Query: 281 REEKLRNQRRQASNTPSHIPISSSFST-SVYQPIPQPTTPV-----------SSFTSGSM 328
+A+ TPS+ P+ + ST Y + P +P SS T S+
Sbjct: 272 -------DDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSL 324
Query: 329 LGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTP 388
L S +PP +F A ++ Q + S + PT P P
Sbjct: 325 SSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGY---------P 375
Query: 389 PHMQT 393
PH+ T
Sbjct: 376 PHIPT 380
>gi|9951920 paired box 5 [Homo sapiens]
Length = 391
Score = 215 bits (548), Expect = 6e-56
Identities = 125/262 (47%), Positives = 158/262 (60%), Gaps = 36/262 (13%)
Query: 2 QNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQN 61
+ H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR-------------- 59
Query: 62 VSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLL 121
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL
Sbjct: 60 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL 119
Query: 122 SEGVCTNDNIPSVSSINRVLRN---------LASEKQQMGADGMYDKLRMLNGQTGSWGT 172
+E VC ND +PSVSSINR++R + + + + G ++ ++ +
Sbjct: 120 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSY 179
Query: 173 RPGWYPGTSVPGQPTQDGCQQQEGGGEN--TNSISSNGEDSDEAQMRLQLKRKLQRNRTS 230
G + P T ++ EG E+ N S G D QMR L
Sbjct: 180 SISGILGITSPSADTNKR-KRDEGIQESPVPNGHSLPGRDFLRKQMRGDL---------- 228
Query: 231 FTQEQIEALEKEFERTHYPDVF 252
FTQ+Q+E L++ FER HY D+F
Sbjct: 229 FTQQQLEVLDRVFERQHYSDIF 250
>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
Length = 321
Score = 213 bits (541), Expect = 4e-55
Identities = 123/267 (46%), Positives = 156/267 (58%), Gaps = 36/267 (13%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR------------- 52
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRL
Sbjct: 53 -VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRL 111
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
L+EGVC ND +PSVSSINR++R + + D + G T P +
Sbjct: 112 LAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSS 163
Query: 181 SV--PGQPTQDGCQQQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------ 227
+V P P D G S +DSD+ RL + + +
Sbjct: 164 AVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHL 223
Query: 228 RT-SFTQEQIEALEKEFERTHYPDVFA 253
RT +F+Q +E LE FER HYP+ +A
Sbjct: 224 RTDAFSQHHLEPLECPFERQHYPEAYA 250
>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
Length = 287
Score = 213 bits (541), Expect = 4e-55
Identities = 123/267 (46%), Positives = 156/267 (58%), Gaps = 36/267 (13%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR------------- 52
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRL
Sbjct: 53 -VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRL 111
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
L+EGVC ND +PSVSSINR++R + + D + G T P +
Sbjct: 112 LAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSS 163
Query: 181 SV--PGQPTQDGCQQQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------ 227
+V P P D G S +DSD+ RL + + +
Sbjct: 164 AVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHL 223
Query: 228 RT-SFTQEQIEALEKEFERTHYPDVFA 253
RT +F+Q +E LE FER HYP+ +A
Sbjct: 224 RTDAFSQHHLEPLECPFERQHYPEAYA 250
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 213 bits (541), Expect = 4e-55
Identities = 123/267 (46%), Positives = 156/267 (58%), Gaps = 36/267 (13%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR------------- 52
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRL
Sbjct: 53 -VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRL 111
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
L+EGVC ND +PSVSSINR++R + + D + G T P +
Sbjct: 112 LAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSS 163
Query: 181 SV--PGQPTQDGCQQQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------ 227
+V P P D G S +DSD+ RL + + +
Sbjct: 164 AVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHL 223
Query: 228 RT-SFTQEQIEALEKEFERTHYPDVFA 253
RT +F+Q +E LE FER HYP+ +A
Sbjct: 224 RTDAFSQHHLEPLECPFERQHYPEAYA 250
>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
Length = 387
Score = 213 bits (541), Expect = 4e-55
Identities = 123/267 (46%), Positives = 156/267 (58%), Gaps = 36/267 (13%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR------------- 52
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKILGRYYETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRL
Sbjct: 53 -VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRL 111
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
L+EGVC ND +PSVSSINR++R + + D + G T P +
Sbjct: 112 LAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSS 163
Query: 181 SV--PGQPTQDGCQQQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------ 227
+V P P D G S +DSD+ RL + + +
Sbjct: 164 AVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHL 223
Query: 228 RT-SFTQEQIEALEKEFERTHYPDVFA 253
RT +F+Q +E LE FER HYP+ +A
Sbjct: 224 RTDAFSQHHLEPLECPFERQHYPEAYA 250
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 173 bits (438), Expect = 3e-43
Identities = 92/152 (60%), Positives = 106/152 (69%), Gaps = 14/152 (9%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
M+ ++ VNQLGGVFVNGRPLP++ R +IVELA G RPCDISR L+
Sbjct: 95 MEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLR------------- 141
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKIL RY ETGSI P AIGGSKPRV TP VV I YK+ P IFAWEIRDRL
Sbjct: 142 -VSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRL 200
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMG 152
L++GVC N+PSVSSI+R+LRN Q G
Sbjct: 201 LADGVCDKYNVPSVSSISRILRNKIGSLAQPG 232
>gi|7242167 paired box 9 [Homo sapiens]
Length = 341
Score = 172 bits (435), Expect = 7e-43
Identities = 92/152 (60%), Positives = 105/152 (69%), Gaps = 14/152 (9%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
M+ + VNQLGGVFVNGRPLP++ R +IVELA G RPCDISR L+
Sbjct: 1 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLR------------- 47
Query: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
VS+GCVSKIL RY ETGSI P AIGGSKPRV TP VV I YK+ P IFAWEIRDRL
Sbjct: 48 -VSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRL 106
Query: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMG 152
L++GVC N+PSVSSI+R+LRN Q G
Sbjct: 107 LADGVCDKYNVPSVSSISRILRNKIGNLAQQG 138
>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
Length = 206
Score = 164 bits (414), Expect = 2e-40
Identities = 86/148 (58%), Positives = 106/148 (71%), Gaps = 15/148 (10%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVC 143
Query: 127 TNDNIPSVSSINRVLRNLASEKQQMGAD 154
+ +PSVSSI+R+LR+ + ++ AD
Sbjct: 144 DRNTVPSVSSISRILRSKFGKGEEEEAD 171
>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
Length = 215
Score = 164 bits (414), Expect = 2e-40
Identities = 86/148 (58%), Positives = 106/148 (71%), Gaps = 15/148 (10%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
Query: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
SKIL RY ETGSIRP AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 84 SKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVC 143
Query: 127 TNDNIPSVSSINRVLRNLASEKQQMGAD 154
+ +PSVSSI+R+LR+ + ++ AD
Sbjct: 144 DRNTVPSVSSISRILRSKFGKGEEEEAD 171
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 109 bits (273), Expect = 4e-24
Identities = 69/164 (42%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 219 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 278
Q K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K++LPE R+QVWF NRRAK
Sbjct: 131 QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAK 190
Query: 279 WRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTN 338
WRR+EKL + ++P SFS S P T GS G AL
Sbjct: 191 WRRQEKLEVSSMKLQDSP-----LLSFSRSP----PSATLSPLGAGPGSGGGPAGGALPL 241
Query: 339 TYSALPPMP--SFTMANNLP-MQPPVPSQTSSYSCMLPTSPSVN 379
PP+P T +LP PP S +SY+ P P +N
Sbjct: 242 ESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLN 285
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 108 bits (270), Expect = 1e-23
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 14/159 (8%)
Query: 201 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 260
T+ + +D+D+ + KRK +RNRT+F Q++ALE+ FERTHYPD F RE LA +
Sbjct: 71 TSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARR 130
Query: 261 IDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTTP 319
++L EAR+QVWF NRRAK+RR E+ + AS S+ S T+V QPI P+P
Sbjct: 131 VNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSY----SGDVTAVEQPIVPRPAPR 186
Query: 320 VSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQ 358
+ + S + YSA+ S T ANN P Q
Sbjct: 187 PTDYLS--------WGTASPYSAMATY-SATCANNSPAQ 216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,885,222
Number of Sequences: 37866
Number of extensions: 966837
Number of successful extensions: 4673
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 3625
Number of HSP's gapped (non-prelim): 1068
length of query: 436
length of database: 18,247,518
effective HSP length: 105
effective length of query: 331
effective length of database: 14,271,588
effective search space: 4723895628
effective search space used: 4723895628
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.