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Search of human proteins with 109134327
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109134327 PTD016 protein [Homo sapiens]
(435 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109134327 PTD016 protein [Homo sapiens] 899 0.0
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 315 4e-86
gi|158186612 transmembrane protein 118 isoform 2 [Homo sapiens] 245 6e-65
gi|87241872 ring finger protein 151 [Homo sapiens] 58 1e-08
gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens] 52 8e-07
gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens] 52 8e-07
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 51 2e-06
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 51 2e-06
gi|21071001 autocrine motility factor receptor [Homo sapiens] 48 2e-05
gi|21389515 ring finger protein 145 [Homo sapiens] 48 2e-05
gi|88759348 ring finger protein 219 [Homo sapiens] 47 3e-05
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 47 3e-05
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 47 3e-05
gi|66571327 ring finger protein 213 [Homo sapiens] 47 3e-05
gi|21361493 ring finger protein 141 [Homo sapiens] 46 6e-05
gi|21314654 ring finger protein 139 [Homo sapiens] 46 8e-05
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 46 8e-05
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 46 8e-05
gi|38679905 tripartite motif-containing 65 [Homo sapiens] 46 8e-05
gi|217035095 tripartite motif-containing 62 [Homo sapiens] 45 1e-04
gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo sap... 44 3e-04
gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo sap... 44 3e-04
gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo ... 44 3e-04
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 44 3e-04
gi|225903455 tripartite motif-containing 77 [Homo sapiens] 44 3e-04
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 44 4e-04
gi|13569903 ring finger protein 32 [Homo sapiens] 43 6e-04
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 42 8e-04
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 42 8e-04
gi|5902158 ring finger protein 113A [Homo sapiens] 42 0.001
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 899 bits (2323), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Query: 1 MPLFLLSLPTPPSASGHERRQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTGSSEDASTP 60
MPLFLLSLPTPPSASGHERRQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTGSSEDASTP
Sbjct: 1 MPLFLLSLPTPPSASGHERRQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTGSSEDASTP 60
Query: 61 QCVHTRLTGEGSCPHSGDVHIQINSIPKECAENASSRNIRSGVHSCAHGCVHSRLRGHSH 120
QCVHTRLTGEGSCPHSGDVHIQINSIPKECAENASSRNIRSGVHSCAHGCVHSRLRGHSH
Sbjct: 61 QCVHTRLTGEGSCPHSGDVHIQINSIPKECAENASSRNIRSGVHSCAHGCVHSRLRGHSH 120
Query: 121 SEARLTDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLL 180
SEARLTDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLL
Sbjct: 121 SEARLTDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLL 180
Query: 181 TTFMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLD 240
TTFMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLD
Sbjct: 181 TTFMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLD 240
Query: 241 HLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFV 300
HLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFV
Sbjct: 241 HLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFV 300
Query: 301 PIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYG 360
PIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYG
Sbjct: 301 PIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYG 360
Query: 361 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI 420
VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI
Sbjct: 361 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI 420
Query: 421 NKWKDGATSSHLQIY 435
NKWKDGATSSHLQIY
Sbjct: 421 NKWKDGATSSHLQIY 435
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 315 bits (808), Expect = 4e-86
Identities = 168/427 (39%), Positives = 252/427 (59%), Gaps = 21/427 (4%)
Query: 20 RQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTGSSEDASTPQCVHTRLTGEGSCPHSGDV 79
R R +A +S + ++ +++ SPP S S P GS GDV
Sbjct: 28 RNRSQALSSEASVDEGGVFESLKAEAASPPALFSGLSGSLPTSSFPSSLVLGSSAGGGDV 87
Query: 80 HIQINSIPKECAENAS--SRNIRSGVHSCAHGC---------VHSRLRGHSHSEARLTDD 128
IQ+ + +E + + R H HG V RGHS ++
Sbjct: 88 FIQMPASREEGGGRGEGGAYHHRQPHHHFHHGGHRGGSLLQHVGGDHRGHS-------EE 140
Query: 129 TAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLLTTFMYANK 188
E + + SE + + WLQK LP+ILIL KL QH GI++ IG+ +TF YAN
Sbjct: 141 GGDEQPGTPAPALSELKAVICWLQKGLPFILILLAKLCFQHKLGIAVCIGMASTFAYANS 200
Query: 189 SIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLDHLSFWEVF 248
++ QV L+E+ S + W+L FLAG+++ + YTF SQ LY SLIFL P L+ L F+++
Sbjct: 201 TLREQVSLKEKRSVLVILWILAFLAGNTLYVLYTFSSQQLYNSLIFLKPNLEMLDFFDLL 260
Query: 249 WIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFVPIPVWFRY 308
WIVGI DF+LK+ + LKCLI+ +P I+ KSKG +Y+++EEL Q +R+ VPI +W++Y
Sbjct: 261 WIVGIADFVLKYITIALKCLIVALPKIILAVKSKGKFYLVIEELSQLFRSLVPIQLWYKY 320
Query: 309 LISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYGVAASKRQC 368
++ + + LG +L +LY + K + G + R+ L++ T +YGV A+ +QC
Sbjct: 321 IMGDDSSNS---YFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQNYGVRATGQQC 377
Query: 369 SDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHINKWKDGAT 428
++ DIC+ICQAEF++P++L+CQH+FCEEC+ LW +RE+TCPLCR+V D + WKDGAT
Sbjct: 378 TEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCRSVAVDTLRCWKDGAT 437
Query: 429 SSHLQIY 435
S+H Q+Y
Sbjct: 438 SAHFQVY 444
>gi|158186612 transmembrane protein 118 isoform 2 [Homo sapiens]
Length = 420
Score = 245 bits (625), Expect = 6e-65
Identities = 140/383 (36%), Positives = 216/383 (56%), Gaps = 21/383 (5%)
Query: 20 RQRPEAKTSGSEKKYLRAMQANRSQLHSPPGTGSSEDASTPQCVHTRLTGEGSCPHSGDV 79
R R +A +S + ++ +++ SPP S S P GS GDV
Sbjct: 28 RNRSQALSSEASVDEGGVFESLKAEAASPPALFSGLSGSLPTSSFPSSLVLGSSAGGGDV 87
Query: 80 HIQINSIPKECAENAS--SRNIRSGVHSCAHGC---------VHSRLRGHSHSEARLTDD 128
IQ+ + +E + + R H HG V RGHS ++
Sbjct: 88 FIQMPASREEGGGRGEGGAYHHRQPHHHFHHGGHRGGSLLQHVGGDHRGHS-------EE 140
Query: 129 TAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLLTTFMYANK 188
E + + SE + + WLQK LP+ILIL KL QH GI++ IG+ +TF YAN
Sbjct: 141 GGDEQPGTPAPALSELKAVICWLQKGLPFILILLAKLCFQHKLGIAVCIGMASTFAYANS 200
Query: 189 SIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLDHLSFWEVF 248
++ QV L+E+ S + W+L FLAG+++ + YTF SQ LY SLIFL P L+ L F+++
Sbjct: 201 TLREQVSLKEKRSVLVILWILAFLAGNTLYVLYTFSSQQLYNSLIFLKPNLEMLDFFDLL 260
Query: 249 WIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFVPIPVWFRY 308
WIVGI DF+LK+ + LKCLI+ +P I+ KSKG +Y+++EEL Q +R+ VPI +W++Y
Sbjct: 261 WIVGIADFVLKYITIALKCLIVALPKIILAVKSKGKFYLVIEELSQLFRSLVPIQLWYKY 320
Query: 309 LISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYGVAASKRQC 368
++ + + LG +L +LY + K + G + R+ L++ T +YGV A+ +QC
Sbjct: 321 IMGDDSSNS---YFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQNYGVRATGQQC 377
Query: 369 SDVDDICSICQAEFQKPILLICQ 391
++ DIC+ICQAEF++P++L+CQ
Sbjct: 378 TEAGDICAICQAEFREPLILLCQ 400
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 58.2 bits (139), Expect = 1e-08
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 370 DVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISD----HINK 422
D + +CS+C ++P L C HIFC++C+ W R+KTCP CR + H+NK
Sbjct: 15 DSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNK 71
>gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 52.4 bits (124), Expect = 8e-07
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 370 DVDDICSICQAEFQKPILLI-CQHIFCEECMTLWFNREKTCPLCRTVIS 417
D D IC IC ++P+ C+H FC C+T WF++++TCP+ R+V++
Sbjct: 13 DEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVT 61
>gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 52.4 bits (124), Expect = 8e-07
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 370 DVDDICSICQAEFQKPILLI-CQHIFCEECMTLWFNREKTCPLCRTVIS 417
D D IC IC ++P+ C+H FC C+T WF++++TCP+ R+V++
Sbjct: 13 DEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVT 61
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 51.2 bits (121), Expect = 2e-06
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 326 LLALLYLILKL-LEFFGHLRTFRQVLRI-----FFTQPSYGVAASKRQCSDVDDICSICQ 379
+++LL+L+L + L+ +G FRQ R S+ A+ + + + +C++C
Sbjct: 242 VISLLHLVLSMGLQLYG----FRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCL 297
Query: 380 AEFQKPILLICQHIFCEECMTLWFNREKTCPLCR 413
E + P C H+FC EC+T W + + CPLCR
Sbjct: 298 EERRHPTATPCGHLFCWECITAWCSSKAECPLCR 331
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 51.2 bits (121), Expect = 2e-06
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 326 LLALLYLILKL-LEFFGHLRTFRQVLRI-----FFTQPSYGVAASKRQCSDVDDICSICQ 379
+++LL+L+L + L+ +G FRQ R S+ A+ + + + +C++C
Sbjct: 222 VISLLHLVLSMGLQLYG----FRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCL 277
Query: 380 AEFQKPILLICQHIFCEECMTLWFNREKTCPLCR 413
E + P C H+FC EC+T W + + CPLCR
Sbjct: 278 EERRHPTATPCGHLFCWECITAWCSSKAECPLCR 311
>gi|21071001 autocrine motility factor receptor [Homo sapiens]
Length = 643
Score = 48.1 bits (113), Expect = 2e-05
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 315 FGNV--TRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYGVAASKRQCSDVD 372
FGN+ + SL I + L YL ++ +R + LR+ + A+ + + +
Sbjct: 282 FGNIWLSMASLVIFMQLRYLFHEVQR---RIRRHKNYLRVVGNMEARFAVATPEELAVNN 338
Query: 373 DICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCR 413
D C+IC Q L C H+F C+ W ++ +CP CR
Sbjct: 339 DDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCR 379
>gi|21389515 ring finger protein 145 [Homo sapiens]
Length = 691
Score = 48.1 bits (113), Expect = 2e-05
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 363 ASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLC 412
A+K Q +DIC+IC + + ++ C H F C+ W ++TCPLC
Sbjct: 553 ATKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWLYVQETCPLC 602
>gi|88759348 ring finger protein 219 [Homo sapiens]
Length = 726
Score = 47.4 bits (111), Expect = 3e-05
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 375 CSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVIS 417
C IC + ++P++ I H+FC C+ LW CP CR I+
Sbjct: 18 CHICLGKVRQPVICINNHVFCSICIDLWLKNNSQCPACRVPIT 60
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 47.0 bits (110), Expect = 3e-05
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 363 ASKRQCSDVDDICSICQAEFQKPIL-LICQHIFCEECMTLWFNREKTCPLCR 413
A+ + +D++C IC+ E L C HIF C+ WF R++TCP CR
Sbjct: 279 ATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 330
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 47.0 bits (110), Expect = 3e-05
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 363 ASKRQCSDVDDICSICQAEFQKPIL-LICQHIFCEECMTLWFNREKTCPLCR 413
A+ + +D++C IC+ E L C HIF C+ WF R++TCP CR
Sbjct: 279 ATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 330
>gi|66571327 ring finger protein 213 [Homo sapiens]
Length = 3280
Score = 47.0 bits (110), Expect = 3e-05
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 375 CSICQAEFQKPILLICQHIFCEECMTLWFNREK-TCPLCRTVISDHIN 421
CSIC + + P+ L C H+ C C+ WF E+ CP C T + D +
Sbjct: 2070 CSICLGDAKDPVCLPCDHVHCLRCLRAWFASEQMICPYCLTALPDEFS 2117
>gi|21361493 ring finger protein 141 [Homo sapiens]
Length = 230
Score = 46.2 bits (108), Expect = 6e-05
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 366 RQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHINKW-- 423
+Q +D ++ C IC + + ++L C H FC++C+ W +R + CP+CR ++ W
Sbjct: 147 KQLTDEEECC-ICM-DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVV 204
Query: 424 KDGATSSHLQIY 435
D T + Y
Sbjct: 205 SDAPTEDDMANY 216
>gi|21314654 ring finger protein 139 [Homo sapiens]
Length = 664
Score = 45.8 bits (107), Expect = 8e-05
Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 32/243 (13%)
Query: 208 LLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLDHLSFWEVF----WIVGITDFILKFFFM 263
+L+ L+ S V + + +F+ P L W + W+ +T F ++
Sbjct: 374 VLMSLSASHVSSFRRHFPVLFVSACLFILPVLLSYVLWHHYALNTWLFAVTAFCVEL--- 430
Query: 264 GLKCLILLVPSFIMP-FKSKGYWYMLLEEL---CQYYRTFVPIPVWFRYLISYG------ 313
CL ++V + F GY+ +L E+L Y R+ I + ++ +G
Sbjct: 431 ---CLKVIVSLTVYTLFMIDGYYNVLWEKLDDYVYYVRSTGSIIEFIFGVVMFGNGAYTM 487
Query: 314 --EFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYGVAASKRQCSDV 371
E G+ R + L A + L+ + R ++ + P + S+ Q ++
Sbjct: 488 MFESGSKIRAFMMCLHAYFNIYLQAKNGWKTFMNRRTAVKKINSLPE--IKGSRLQ--EI 543
Query: 372 DDICSICQAEFQKPILLI-CQHIFCEECMTLWFNREKTCPLC--RTVISDHINKWKDGAT 428
+D+C+IC EF + C H F C+ W + TCP+C + I D I KD +
Sbjct: 544 NDVCAICYHEFTTSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDDI---KDNSN 600
Query: 429 SSH 431
S+
Sbjct: 601 VSN 603
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 45.8 bits (107), Expect = 8e-05
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 371 VDDICSICQAEFQKPILLICQHIFCEECMTLWF---NREKTCPLCR 413
V+ CS+C ++P+++ C H FC+ C+T W+ R+ CP+CR
Sbjct: 25 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR 70
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 45.8 bits (107), Expect = 8e-05
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 371 VDDICSICQAEFQKPILLICQHIFCEECMTLWF---NREKTCPLCR 413
V+ CS+C ++P+++ C H FC+ C+T W+ R+ CP+CR
Sbjct: 25 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR 70
>gi|38679905 tripartite motif-containing 65 [Homo sapiens]
Length = 517
Score = 45.8 bits (107), Expect = 8e-05
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 375 CSICQAEFQKPILLICQHIFCEECMTLWFNR-EKTCPLCRTVISDHINKWKDGATSSHLQ 433
C+IC +Q P+ L C H FC C+ W++R K CP CR D ++ A S L+
Sbjct: 12 CAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFPDGAELRRNVALSGVLE 71
Query: 434 I 434
+
Sbjct: 72 V 72
>gi|217035095 tripartite motif-containing 62 [Homo sapiens]
Length = 475
Score = 45.4 bits (106), Expect = 1e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 368 CSDVDDI-CSICQAEFQKPILLICQHIFCEECMT-LWFNRE----KTCPLCRTVISD 418
CS D++ CSIC + +Q P+ L C+H FC C+T W +E + CP CR ++
Sbjct: 3 CSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAE 59
>gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 361 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKT---CPLCRTV 415
+A++ QCS + CSIC P+ + C H FC C+ L + T CP+CR +
Sbjct: 1 MASAITQCSTSELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCREI 58
>gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 361 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKT---CPLCRTV 415
+A++ QCS + CSIC P+ + C H FC C+ L + T CP+CR +
Sbjct: 1 MASAITQCSTSELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCREI 58
>gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo
sapiens]
Length = 450
Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 361 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKT---CPLCRTV 415
+A++ QCS + CSIC P+ + C H FC C+ L + T CP+CR +
Sbjct: 1 MASAITQCSTSELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCREI 58
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 43.9 bits (102), Expect = 3e-04
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 375 CSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCR 413
C IC F + + L C H FC C+ W R+ CP+CR
Sbjct: 403 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 441
>gi|225903455 tripartite motif-containing 77 [Homo sapiens]
Length = 450
Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 361 VAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKT---CPLCRTV 415
+A++ QCS + CSIC P+ + C H FC C+ L + T CP+CR +
Sbjct: 1 MASAITQCSTSELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCREI 58
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 43.5 bits (101), Expect = 4e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 370 DVDDI-CSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI 420
DV D CS+C F +P+ C H FC+ C+ + CPLC+ + +++
Sbjct: 473 DVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLKEYL 524
>gi|13569903 ring finger protein 32 [Homo sapiens]
Length = 362
Score = 42.7 bits (99), Expect = 6e-04
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 375 CSICQAEFQ--KPILLICQHIFCEECMTLW--FNREKTCPLCR 413
C IC+ EF+ +LL C H+F + C+ + F +KTCPLCR
Sbjct: 127 CPICKEEFELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCR 169
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 42.4 bits (98), Expect = 8e-04
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 356 QPSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTV 415
+P+ + + SD++ C++C F +P+ C H FC +C+ + CPLC+
Sbjct: 450 KPALSLPLASFDASDLE--CALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDG 507
Query: 416 IS 417
+S
Sbjct: 508 LS 509
Score = 32.7 bits (73), Expect = 0.66
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 375 CSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVIS 417
C C P+ L C H FC+ C+ ++ C LC +S
Sbjct: 158 CRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLS 200
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 42.4 bits (98), Expect = 8e-04
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 356 QPSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTV 415
+P+ + + SD++ C++C F +P+ C H FC +C+ + CPLC+
Sbjct: 409 KPALSLPLASFDASDLE--CALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDG 466
Query: 416 IS 417
+S
Sbjct: 467 LS 468
Score = 32.7 bits (73), Expect = 0.66
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 375 CSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVIS 417
C C P+ L C H FC+ C+ ++ C LC +S
Sbjct: 158 CRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLS 200
>gi|5902158 ring finger protein 113A [Homo sapiens]
Length = 343
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 369 SDVDDI---CSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLC 412
SD ++I C IC+ FQ P++ C+H FCE C F C +C
Sbjct: 253 SDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVC 299
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,414,596
Number of Sequences: 37866
Number of extensions: 788675
Number of successful extensions: 3360
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 3033
Number of HSP's gapped (non-prelim): 429
length of query: 435
length of database: 18,247,518
effective HSP length: 105
effective length of query: 330
effective length of database: 14,271,588
effective search space: 4709624040
effective search space used: 4709624040
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.