Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NME1 Sequence: fasta or formatted (152aa) NCBI GI: 4557797
Description:

non-metastatic cells 1, protein (NM23A) expressed in isoform b

Referenced in:

Nucleotide Pathways

Other entries for this name:
alt prot [177aa] non-metastatic cells 1, protein (NM23A) expressed in isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          8           1
 C cysteine            2.0          3           1
 D aspartate           5.3          8           1
 E glutamate           8.6         13           2
 F phenylalanine       5.3          8           2
 G glycine             9.9         15           1
 H histidine           2.6          4           1
 I isoleucine          6.6         10           2
 K lysine              6.6         10           1
 L leucine             7.2         11           2
 M methionine          3.3          5           1
 N asparagine          3.3          5           1
 P proline             3.9          6           1
 Q glutamine           3.3          5           1
 R arginine            5.3          8           1
 S serine              4.6          7           1
 T threonine           3.3          5           1
 V valine              9.2         14           2
 W tryptophan          2.0          3           1
 Y tyrosine            2.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   non-metastatic cells 1, protein (NM23A) expressed in ... 
NME1                  1.000   non-metastatic cells 1, protein (NM23A) expressed in...
NME2                  0.883   nucleoside diphosphate kinase B 
NME2                  0.883   nucleoside diphosphate kinase B 
NME2                  0.883   nucleoside diphosphate kinase B 
NME2                  0.883   nucleoside diphosphate kinase B 
NME1-NME2             0.883   NME1-NME2 protein 
NME3                  0.679   nucleoside diphosphate kinase 3 
NME4                  0.559   nucleoside diphosphate kinase 4 
NME7                  0.159   nucleoside diphosphate kinase 7 isoform b 
NME7                  0.159   nucleoside diphosphate kinase 7 isoform a 
NME6                  0.134   nucleoside diphosphate kinase type 6 
NME5                  0.131   non-metastatic cells 5, protein expressed in (nucleos...
TXNDC6                0.114   thioredoxin domain containing 6 
TXNDC3                0.114   thioredoxin domain containing 3 
ABCA1                 0.017   ATP-binding cassette, sub-family A member 1 
ABCA12                0.010   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.010   ATP-binding cassette, sub-family A, member 12 isofor...
ACLY                  0.007   ATP citrate lyase isoform 2 
ACLY                  0.007   ATP citrate lyase isoform 1 
ASB6                  0.007   ankyrin repeat and SOCS box-containing 6 isoform 1 [H...
AFAP1L2               0.007   KIAA1914 protein isoform 1 
AFAP1L2               0.007   KIAA1914 protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press