Guide to the Human Genome
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Name: MYOC Sequence: fasta or formatted (504aa) NCBI GI: 4557779
Description:

myocilin

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         34           2
 C cysteine            1.8          9           2
 D aspartate           4.6         23           1
 E glutamate           8.5         43           3
 F phenylalanine       2.6         13           2
 G glycine             6.0         30           2
 H histidine           0.8          4           1
 I isoleucine          3.6         18           2
 K lysine              4.4         22           2
 L leucine            10.5         53           4
 M methionine          1.6          8           1
 N asparagine          3.4         17           1
 P proline             4.4         22           2
 Q glutamine           5.6         28           1
 R arginine            7.1         36           2
 S serine              8.3         42           3
 T threonine           8.5         43           2
 V valine              5.6         28           2
 W tryptophan          1.8          9           1
 Y tyrosine            4.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myocilin 
OLFM1                 0.200   olfactomedin related ER localized protein isoform 1 ...
OLFM2                 0.198   olfactomedin 2 
OLFM3                 0.178   olfactomedin 3 
LPHN3                 0.163   latrophilin 3 precursor 
LPHN2                 0.154   latrophilin 2 precursor 
LPHN1                 0.149   latrophilin 1 isoform 1 precursor 
LPHN1                 0.149   latrophilin 1 isoform 2 precursor 
OLFML2A               0.149   olfactomedin-like 2A 
OLFML2B               0.143   olfactomedin-like 2B 
OLFM4                 0.118   olfactomedin 4 precursor 
OLFML3                0.101   olfactomedin-like 3 
OLFML1                0.093   olfactomedin-like 1 
GLDN                  0.067   gliomedin 
CCDC88A               0.027   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.027   coiled-coil domain containing 88A isoform 1 
LOC100133220          0.020   PREDICTED: hypothetical protein 
CCDC158               0.020   coiled-coil domain containing 158 
GOLGA6D               0.019   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.019   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
TRIP11                0.019   thyroid hormone receptor interactor 11 
CROCC                 0.019   ciliary rootlet coiled-coil 
MAP4K4                0.019   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.019   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.019   mitogen-activated protein kinase kinase kinase kinas...
GOLGA6                0.019   golgi autoantigen, golgin subfamily a, 6 
FYCO1                 0.019   FYVE and coiled-coil domain containing 1 
CCDC88C               0.019   DVL-binding protein DAPLE 
GOLGA6B               0.018   golgi autoantigen, golgin subfamily a, 6B 
CEP250                0.017   centrosomal protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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