Guide to the Human Genome
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Name: GMPPA Sequence: fasta or formatted (420aa) NCBI GI: 45447090
Description:

GDP-mannose pyrophosphorylase A

Referenced in:

Protein Glycosylation

Other entries for this name:
alt mRNA [420aa] GDP-mannose pyrophosphorylase A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         29           2
 C cysteine            1.4          6           1
 D aspartate           3.6         15           1
 E glutamate           5.5         23           1
 F phenylalanine       4.3         18           2
 G glycine             8.8         37           3
 H histidine           3.6         15           2
 I isoleucine          6.7         28           2
 K lysine              2.9         12           1
 L leucine            11.2         47           3
 M methionine          1.2          5           1
 N asparagine          3.1         13           1
 P proline             7.9         33           1
 Q glutamine           5.7         24           2
 R arginine            5.7         24           2
 S serine              6.2         26           1
 T threonine           4.8         20           2
 V valine              6.9         29           1
 W tryptophan          1.2          5           1
 Y tyrosine            2.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GDP-mannose pyrophosphorylase A 
GMPPA                 1.000   GDP-mannose pyrophosphorylase A 
GMPPB                 0.212   GDP-mannose pyrophosphorylase B isoform 2 
GMPPB                 0.211   GDP-mannose pyrophosphorylase B isoform 1 
EIF2B5                0.019   eukaryotic translation initiation factor 2B, subunit...
EIF2B3                0.013   eukaryotic translation initiation factor 2B, subunit ...
FAM71E2               0.008   hypothetical protein LOC284418 
APOB                  0.006   apolipoprotein B precursor 
ZCCHC2                0.005   zinc finger, CCHC domain containing 2 
FLJ21511              0.005   hypothetical protein LOC80157 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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