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Search of human proteins with 4507351
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507351 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform a [Homo sapiens]
(264 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62865614 TAF9 RNA polymerase II, TATA box binding protein-ass... 522 e-148
gi|4507351 TAF9 RNA polymerase II, TATA box binding protein-asso... 522 e-148
gi|20070280 transcription associated factor 9B [Homo sapiens] 394 e-110
gi|116284392 mucin 2 precursor [Homo sapiens] 37 0.018
gi|239750268 PREDICTED: hypothetical protein [Homo sapiens] 37 0.018
gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo ... 37 0.018
gi|151301154 mucin 6, gastric [Homo sapiens] 37 0.023
gi|19924161 RPB5-mediating protein isoform b [Homo sapiens] 36 0.030
gi|19924159 RPB5-mediating protein isoform a [Homo sapiens] 36 0.030
gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo sap... 35 0.051
gi|83367077 mucin 16 [Homo sapiens] 35 0.067
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 35 0.067
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 35 0.067
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 35 0.067
gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 35 0.088
gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 35 0.088
gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 35 0.088
gi|41350214 asporin [Homo sapiens] 35 0.088
gi|110347463 human immunodeficiency virus type I enhancer bindin... 35 0.088
gi|239751395 PREDICTED: hypothetical protein, partial [Homo sapi... 34 0.11
gi|239745904 PREDICTED: hypothetical protein, partial [Homo sapi... 34 0.11
gi|163965366 nascent polypeptide-associated complex alpha subuni... 34 0.11
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 34 0.15
gi|115529449 upstream binding transcription factor, RNA polymera... 34 0.15
gi|115529451 upstream binding transcription factor, RNA polymera... 34 0.15
gi|7657671 upstream binding transcription factor, RNA polymerase... 34 0.15
gi|161019170 mucin 5AC [Homo sapiens] 33 0.20
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 33 0.20
gi|4504487 histidine rich calcium binding protein precursor [Hom... 33 0.20
gi|7662316 HIV-1 Vpr binding protein [Homo sapiens] 33 0.26
>gi|62865614 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform a [Homo sapiens]
Length = 264
Score = 522 bits (1344), Expect = e-148
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
Sbjct: 1 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
Query: 61 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY 120
AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
Sbjct: 61 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY 120
Query: 121 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM 180
CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
Sbjct: 121 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM 180
Query: 181 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES 240
SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
Sbjct: 181 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES 240
Query: 241 SNALKRKREDDDDDDDDDDDYDNL 264
SNALKRKREDDDDDDDDDDDYDNL
Sbjct: 241 SNALKRKREDDDDDDDDDDDYDNL 264
>gi|4507351 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform a [Homo sapiens]
Length = 264
Score = 522 bits (1344), Expect = e-148
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
Sbjct: 1 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
Query: 61 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY 120
AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
Sbjct: 61 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY 120
Query: 121 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM 180
CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
Sbjct: 121 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM 180
Query: 181 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES 240
SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
Sbjct: 181 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES 240
Query: 241 SNALKRKREDDDDDDDDDDDYDNL 264
SNALKRKREDDDDDDDDDDDYDNL
Sbjct: 241 SNALKRKREDDDDDDDDDDDYDNL 264
>gi|20070280 transcription associated factor 9B [Homo sapiens]
Length = 251
Score = 394 bits (1012), Expect = e-110
Identities = 206/255 (80%), Positives = 227/255 (89%), Gaps = 6/255 (2%)
Query: 1 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
MESGK A PK+ P+DA +MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
Sbjct: 1 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
Query: 61 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY 120
AKK VDADDVRLAIQCRADQSFTSPPPRDFLLDIARQ+NQTPLPLIKPY+GPRLPPDRY
Sbjct: 61 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY 120
Query: 121 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM 180
CLTAPNYRLKSL KK + GR+ VPRLSVG+V+S+P+TPT+ TPQT+SV KV TPM
Sbjct: 121 CLTAPNYRLKSLIKK-GPNQGRL-VPRLSVGAVSSKPTTPTIA--TPQTVSVPNKVATPM 176
Query: 181 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES 240
S+T QRFTVQ+P SQS VK +PAT+AVQNVLINPS+IG KNILITTNM+SSQNTANE
Sbjct: 177 SVTSQRFTVQIPPSQSTPVK-PVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANE- 234
Query: 241 SNALKRKREDDDDDD 255
+N LKRK EDDDD+D
Sbjct: 235 ANPLKRKHEDDDDND 249
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 37.0 bits (84), Expect = 0.018
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 84 TSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRI 143
T+PPP + TP P P + PP ++P S T+
Sbjct: 1649 TTPPPTT---TPSPPTTTTPSP---PITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPT 1702
Query: 144 TVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASI 203
T P + + T+ PS+ T +P P TM+ + TP T T+ T+ SP +
Sbjct: 1703 TTPSSPI-TTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPL 1761
Query: 204 P 204
P
Sbjct: 1762 P 1762
Score = 33.9 bits (76), Expect = 0.15
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 154 TSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVL 213
T+ PS PT TP+P T++ +T T T P + +P+ + P T
Sbjct: 1575 TTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTT 1634
Query: 214 INPSLIGSKNILITT 228
+ P+ S TT
Sbjct: 1635 LPPTTTPSPPPTTTT 1649
Score = 32.7 bits (73), Expect = 0.33
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 12/161 (7%)
Query: 70 DVRLAIQC--RADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNY 127
D ++ + C D+ T+P P T P P PP T P
Sbjct: 1381 DYKIRVNCCWPMDKCITTPSPPTTTPSPPPTSTTTLPPTTTPS-----PPTTTTTTPPPT 1435
Query: 128 RLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRF 187
S +T+ T P + + T+ P T T PT T S T +P + T
Sbjct: 1436 TTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPT-TTPSPPTTTPSPPTTT---- 1490
Query: 188 TVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITT 228
T P + +P+ + P T + P+ S TT
Sbjct: 1491 TTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTT 1531
Score = 32.0 bits (71), Expect = 0.57
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 102 TPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPT 161
TP P P + PP + P S +T+ T P + + T P T T
Sbjct: 1640 TPSP---PPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPI-TTTPSPPTTT 1695
Query: 162 LGTPTPQTMSVS--TKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATS 207
+ TP+P T S T TP S T T+ SP S P T+
Sbjct: 1696 MTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTT 1743
Score = 28.1 bits (61), Expect = 8.2
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 143 ITVPRLSVGSVTSRPSTPTLG--------TPTPQTMSVSTKVGTPMSLTGQRFTVQMPTS 194
+T P + T P+ PT TPTP T TP++ T PT
Sbjct: 1879 VTQPTTMTTTTTENPTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 1938
Query: 195 QSPAVKASIPATSAV 209
I T+ V
Sbjct: 1939 TQTPTTTPITTTTTV 1953
Score = 28.1 bits (61), Expect = 8.2
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 144 TVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASI 203
T+P + T+ PSTPT T T ++S T S G PT + +S
Sbjct: 4240 TLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTTTSPPG------TPTRGTTTGSSSA 4293
Query: 204 PATSAVQNVLIN-----PSLIGSKNILITTNM 230
P S VQ + P+ + + +I+ TT +
Sbjct: 4294 PTPSTVQTTTTSAWTPTPTPLSTPSIIRTTGL 4325
>gi|239750268 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1154
Score = 37.0 bits (84), Expect = 0.018
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 245 KRKREDDDDDDDDDDDYDNL 264
++KR DDDDDDDDDDD D++
Sbjct: 19 RKKRYDDDDDDDDDDDDDDI 38
Score = 36.2 bits (82), Expect = 0.030
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 231 MSSQN---TANESSNALKRKREDDDDDDDDDDDYDN 263
M S+N T +++ +KRK+ DDDDDDDDDD D+
Sbjct: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDD 36
Score = 34.7 bits (78), Expect = 0.088
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 225 LITTNMMSSQNTANESSNALKRKREDDDDDDDDDDD 260
+ + N + + E KR +DDDDDDDDDDD
Sbjct: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDD 36
Score = 28.1 bits (61), Expect = 8.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 230 MMSSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
M S + + + KR+ DDDDDDDD D+
Sbjct: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDD 34
>gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo
sapiens]
Length = 1154
Score = 37.0 bits (84), Expect = 0.018
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 245 KRKREDDDDDDDDDDDYDNL 264
++KR DDDDDDDDDDD D++
Sbjct: 19 RKKRYDDDDDDDDDDDDDDI 38
Score = 36.2 bits (82), Expect = 0.030
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 231 MSSQN---TANESSNALKRKREDDDDDDDDDDDYDN 263
M S+N T +++ +KRK+ DDDDDDDDDD D+
Sbjct: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDD 36
Score = 34.7 bits (78), Expect = 0.088
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 225 LITTNMMSSQNTANESSNALKRKREDDDDDDDDDDD 260
+ + N + + E KR +DDDDDDDDDDD
Sbjct: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDD 36
Score = 28.1 bits (61), Expect = 8.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 230 MMSSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
M S + + + KR+ DDDDDDDD D+
Sbjct: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDD 34
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 36.6 bits (83), Expect = 0.023
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 115 LPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVST 174
LP T+P + Q+ T+A + T PR + S T P+TP G PT T + +T
Sbjct: 1331 LPTPATSGTSPTLPKSTNQELPGTTATQTTGPRPTPASTTG-PTTPQPGQPTRPTATETT 1389
Query: 175 KVGTPMSLTGQRFTVQMP--TSQSPAVKASIPATSAV 209
+ T T T Q P T P + +P+T V
Sbjct: 1390 QTRTTTEYT----TPQTPHTTHSPPTAGSPVPSTGPV 1422
>gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]
Length = 495
Score = 36.2 bits (82), Expect = 0.030
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 238 NESSNALKRKREDDDDDDDDDDDYDNL 264
N S N DDDDDDDDDDD DN+
Sbjct: 247 NCSVNGSSSYHSDDDDDDDDDDDDDNI 273
Score = 33.1 bits (74), Expect = 0.26
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
S N + S++ +DDDDDDDDDD+ D+
Sbjct: 244 SQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDD 275
Score = 32.7 bits (73), Expect = 0.33
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 228 TNMMSSQNTANESSNALKRKREDDDDDDDDDDD 260
+ ++SQ + + ++ +DDDDDDDDDDD
Sbjct: 239 SGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDD 271
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 236 TANESSNALKRKREDDDDDDD----DDDDYDN 263
+ N SS+ +DDDDDDD DDDD DN
Sbjct: 249 SVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDN 280
>gi|19924159 RPB5-mediating protein isoform a [Homo sapiens]
Length = 535
Score = 36.2 bits (82), Expect = 0.030
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 238 NESSNALKRKREDDDDDDDDDDDYDNL 264
N S N DDDDDDDDDDD DN+
Sbjct: 287 NCSVNGSSSYHSDDDDDDDDDDDDDNI 313
Score = 33.1 bits (74), Expect = 0.26
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
S N + S++ +DDDDDDDDDD+ D+
Sbjct: 284 SQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDD 315
Score = 32.7 bits (73), Expect = 0.33
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 228 TNMMSSQNTANESSNALKRKREDDDDDDDDDDD 260
+ ++SQ + + ++ +DDDDDDDDDDD
Sbjct: 279 SGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDD 311
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 236 TANESSNALKRKREDDDDDDD----DDDDYDN 263
+ N SS+ +DDDDDDD DDDD DN
Sbjct: 289 SVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDN 320
>gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo
sapiens]
Length = 1064
Score = 35.4 bits (80), Expect = 0.051
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 153 VTSRPSTPTLGTPTPQTMSVSTKVGTPM-SLTGQRFTVQMPTSQSPAVKASIPATSAVQN 211
VT+ P+T T TPT +T ++ T S T ++ + + SP ++P TS+ Q
Sbjct: 315 VTTLPTTITRSTPTSETTYPASPTSTVTDSTTEITYSTVLTGTLSPT--TTLPPTSSSQQ 372
Query: 212 VLINPSLIGSKNILITTNMMSSQNTANESSNAL 244
P + + ++ TT +SQ++ N SS+A+
Sbjct: 373 TTETP-MTPTTKLVTTTTETTSQSSLNFSSSAI 404
Score = 33.9 bits (76), Expect = 0.15
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 153 VTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNV 212
VT+ P+T T TPT +T ++ T T + T + + + + S+PAT++ +
Sbjct: 932 VTTLPTTITTSTPTSETTYSTSPTSTVTDSTTET-TYSTSITGTLSTEISLPATTS-SLI 989
Query: 213 LINPSLIGSKNILITTNMMSSQNT 236
S+ ++N++ TTN +S +T
Sbjct: 990 TKGISMTSTRNLVTTTNENTSHST 1013
Score = 29.3 bits (64), Expect = 3.7
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 120 YCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVG-- 177
Y +T ++ ST+ R T + +VT S T T+S +T+
Sbjct: 170 YPMTTTEKGTSAMISSPSTTTARET----PIVTVTPSSSVSATDTTFHTTISSTTRTTER 225
Query: 178 TPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNT 236
TP+ TG T PT +K ++ +TS + + + + + + S + TT+ ++ NT
Sbjct: 226 TPLP-TGSIHTTMSPTPVFTTLKTAVTSTSPITSTITSTNTVTS--MTTTTSRPTATNT 281
Score = 28.5 bits (62), Expect = 6.3
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 154 TSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVL 213
+S+ +T T TPT + ++ +T+ + SL + S S +S+P TS
Sbjct: 369 SSQQTTETPMTPTTKLVTTTTETTSQSSLNFSSSAIYSTVSTSTTAISSLPPTSG----- 423
Query: 214 INPSLIGSKNILITTNM 230
+++ S NI+ T ++
Sbjct: 424 ---TMVTSTNIVPTADL 437
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 35.0 bits (79), Expect = 0.067
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 154 TSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPT---SQSPAVKASIPATSAVQ 210
TS P +L PT T + ++ GTP++ T QRFT T S+ P S P+ +V+
Sbjct: 4097 TSPPGATSLSAPTLDTSATASWTGTPLATT-QRFTYSEKTTLFSKGPE-DTSQPSPPSVE 4154
Query: 211 NVLINPSLI------GSKNILITTNMMSSQNT 236
+ SL+ NIL+T+ S +T
Sbjct: 4155 ETSSSSSLVPIHATTSPSNILLTSQGHSPSST 4186
Score = 31.2 bits (69), Expect = 0.97
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 122 LTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSR-----PS-------TPTLGTPTPQT 169
LTA +LQ+ ST+ I + +SVG++T PS TP T P
Sbjct: 4599 LTAGRKENSTLQEMNSTTESNIILSNVSVGAITEATKMEVPSFDATFIPTPAQSTKFPDI 4658
Query: 170 MSVST---KVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLI--GSKNI 224
SV++ PM+++ T Q +S + + TS ++ PS++ G +
Sbjct: 4659 FSVASSRLSNSPPMTISTHMTTTQTGSSGATSKIPLALDTSTLETSAGTPSVVTEGFAHS 4718
Query: 225 LITTNMMSSQNTANESS 241
ITT M + ++++
Sbjct: 4719 KITTAMNNDVKDVSQTN 4735
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 157 PSTP-TLGTPTPQTMSVSTKVGTPMSLTGQ-RFTVQMPTSQSPA 198
PS P +LG M++ T+ G P+ T Q FT+ PT+ S A
Sbjct: 6719 PSLPISLGITESSNMTIITRTGPPLGSTSQGTFTLDTPTTSSRA 6762
Score = 29.3 bits (64), Expect = 3.7
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 135 KASTSAGRITVPRLSVGSVTSRPSTPTLGTPTP--QTMSVSTKVGTPMSLTGQRFTVQMP 192
K +T+A + T S ++T+ TPTLGT TP +M +++ + T M +T +P
Sbjct: 10480 KTTTTALKTT----SRATLTTSVYTPTLGTLTPLNASMQMASTIPTEMMITTPYVFPDVP 10535
Query: 193 TSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES 240
+ S ++ S+ A ++ PS+ ++ TT + S++ A S
Sbjct: 10536 ETTS-SLATSLGAETSTALPRTTPSVFNRES--ETTASLVSRSGAERS 10580
Score = 29.3 bits (64), Expect = 3.7
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 36/125 (28%)
Query: 104 LPLIKPYS-GPRLPPDRYCLTAPNYRLKSLQKK-----------ASTSAGRITVPR--LS 149
L L++P G D C P+ ++ L ++ + T G T+ R L
Sbjct: 13221 LTLLRPEKDGVATRVDAICTHRPDPKIPGLDRQQLYWELSQLTHSITELGPYTLDRDSLY 13280
Query: 150 VGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAV 209
V T R S PT TP GT FTVQ TS++P +S+P +A
Sbjct: 13281 VNGFTQRSSVPTTSTP-----------GT--------FTVQPETSETP---SSLPGPTAT 13318
Query: 210 QNVLI 214
VL+
Sbjct: 13319 GPVLL 13323
Score = 28.9 bits (63), Expect = 4.8
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 141 GRITVPRLSVGSVTSRP-STPTLGTPTPQTM-SVSTKVGTPMSLTGQRFTVQMPTSQSPA 198
G +T S +VTS T TL P+T S++T G S T V + + P
Sbjct: 10986 GMVTSLVASSRAVTSTTLPTLTLSPGEPETTPSMATSHGAEASST-----VPTVSPEVPG 11040
Query: 199 VKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANESS 241
V S+ +S+ N P+LI S L TT M++ + A SS
Sbjct: 11041 VVTSLVTSSSGVNSTSIPTLILSPGELETTPSMATSHGAEASS 11083
Score = 28.5 bits (62), Expect = 6.3
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 137 STSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGT------PMSLTGQRFTVQ 190
STS G T+ + S S T P + +V K P S+ F+
Sbjct: 6745 STSQGTFTLDTPTTSSRAGTHSMATQEFPHSEMTTVMNKDPEILSWTIPPSIEKTSFSSS 6804
Query: 191 M---PTSQSPAVKASIP----ATSAVQNVLINPSLIGSKNILITTNMMSSQNTANESSNA 243
+ P SP V +++P T + L+ PSL+ + + L T+ ++ + N SS +
Sbjct: 6805 LMPSPAMTSPPVSSTLPKTIHTTPSPMTSLLTPSLVMTTDTLGTSPEPTTSSPPNLSSTS 6864
Query: 244 LKRKREDDD 252
+ D+D
Sbjct: 6865 HEILTTDED 6873
Score = 28.5 bits (62), Expect = 6.3
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 148 LSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSL 182
L V T R S PT TP T+ + T GTP SL
Sbjct: 12500 LYVNGFTHRTSVPTSSTPGTSTVDLGTS-GTPFSL 12533
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 35.0 bits (79), Expect = 0.067
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 12/147 (8%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAS-----TSAGRITVPRLSVGSVTSRPST 159
P P + LP R T P + +S T + T P ++ + T +
Sbjct: 4500 PSSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTP 4559
Query: 160 PTLGTPTPQTMSVST-----KVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLI 214
T+ T T T + +T V TP S G T ++PT+ + A+ +S+ L
Sbjct: 4560 ETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTAT--PSSSPGTALT 4617
Query: 215 NPSLIGSKNILITTNMMSSQNTANESS 241
P I + TT +S +T SS
Sbjct: 4618 PPVWISTTTTPTTTTPTTSGSTVTPSS 4644
Score = 33.9 bits (76), Expect = 0.15
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 137 STSAGRITVPRLSVGSVTSRPS-TPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQ 195
+T+ G P S G+ + P T TPT T + S TP S+ G T ++ T+
Sbjct: 4599 TTTTGFTATPSSSPGTALTPPVWISTTTTPTTTTPTTSGSTVTPSSIPGTTHTARVLTTT 4658
Query: 196 SPAVKASIPAT--SAVQNVLINPSLIGSKNILITTNMMSSQNTANESS 241
+ V AT S+ Q PSL + T + ++ +T N SS
Sbjct: 4659 TTTVATGSMATPSSSTQTSGTPPSLTTT-----ATTITATGSTTNPSS 4701
Score = 32.7 bits (73), Expect = 0.33
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 19/149 (12%)
Query: 84 TSPPPRDFLLDIARQR--NQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAG 141
T+PPP+ + P P + LP R T P S+ S+S G
Sbjct: 1935 TAPPPKVLTTTATTPTVTSSKATPSSSPGTATALPALRSTATTPT--ATSVTPIPSSSLG 1992
Query: 142 -------RITVPRLSVGSVT--SRPSTP---TLGTPTPQTMSVSTKVGTPMSLTGQRFTV 189
+ T P ++ + T S P T T+ T T T + V TP S G T
Sbjct: 1993 TTWTRLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGSVATPSSTPGTAHTT 2052
Query: 190 QMPTSQS---PAVKASIPATSAVQNVLIN 215
++PT+ + A +S P T+ V I+
Sbjct: 2053 KVPTTTTTGFTATPSSSPGTALTPPVWIS 2081
Score = 32.0 bits (71), Expect = 0.57
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAS-----TSAGRITVPRLSVGSVTSRPST 159
P P + LP R T P + +S T + T P ++ + T +
Sbjct: 3215 PSSSPGTATALPALRSTATTPTATSVTAIPSSSLGTAWTRLSQTTTPTATMSTATPSSTP 3274
Query: 160 PTLGTPTPQTMSVST-----KVGTPMSLTGQRFTVQMPTSQS---PAVKASIPATSAVQN 211
T+ T T T + +T V TP S G T ++PT+ + A +S P T+
Sbjct: 3275 ETVHTSTVLTTTTTTTRATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPP 3334
Query: 212 VLIN 215
V I+
Sbjct: 3335 VWIS 3338
Score = 31.6 bits (70), Expect = 0.74
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGT 164
P P + LP R T P S S+S G T RLS T+ +T + T
Sbjct: 2515 PFSSPGTATALPALRSTATTPT--ATSFTAIPSSSLGT-TWTRLS--QTTTPTATMSTAT 2569
Query: 165 P--TPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPS 217
P TP+T+ ST + T + TG +V P+S + T+ PS
Sbjct: 2570 PSSTPETVHTSTVLTTTATTTGATGSVATPSSTPGTAHTTKVLTTTTTGFTATPS 2624
Score = 30.4 bits (67), Expect = 1.7
Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 23/150 (15%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAS-----TSAGRITVPRLSVGSVTSRPST 159
P P + LP R T P + +S T + T P ++ + T +
Sbjct: 3772 PFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTP 3831
Query: 160 PTLGTPTPQTMSVST-----KVGTPMSLTGQRFTVQMPTSQS---PAVKASIPATSAVQN 211
T T T T + +T V TP S G T ++PT+ + +S P T+
Sbjct: 3832 ETAHTSTVLTTTATTTRATGSVATPSSTPGTAHTTKVPTTTTTGFTVTPSSSPGTARTPP 3891
Query: 212 VLINPSLIGSKNILITTNMMSSQNTANESS 241
V I+ TT +S +T SS
Sbjct: 3892 VWIS----------TTTTPTTSGSTVTPSS 3911
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 138 TSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSP 197
T+ G T P + G+ P P L T T T + ++ TP S G T +P + +
Sbjct: 2144 TATGSTTNPSSTPGTT---PIPPVL-TTTATTPAATSNTVTPSSALGTTHTPPVPNTMAT 2199
Query: 198 AVKASIPA----------TSAVQNVL-----INPSLIGSKNILITTNMMSSQNTANESSN 242
S+P TSA +L PS + S + TT A S +
Sbjct: 2200 THGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTLAATTGTTQHSTPALSSPH 2259
Query: 243 ALKRKRE 249
R E
Sbjct: 2260 PSSRTTE 2266
Score = 29.6 bits (65), Expect = 2.8
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 137 STSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQS 196
+T+ G P S G+ TP + T T + S TP S+ G T + T+ +
Sbjct: 3871 TTTTGFTVTPSSSPGTAR----TPPVWISTTTTPTTSGSTVTPSSVPGTTHTPTVLTTTT 3926
Query: 197 PAVKASIPAT--SAVQNVLINPSLIGSKNILITTNMMSSQNTANESS 241
V AT S+ Q PSLI + T + ++ +T N SS
Sbjct: 3927 TTVATGSMATPSSSTQTSGTPPSLITT-----ATTITATGSTTNPSS 3968
Score = 28.1 bits (61), Expect = 8.2
Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 138 TSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSP 197
T+ G T P + G+ P P L T T T + ++ TP S G T +P + +
Sbjct: 3401 TATGSTTNPSSTPGTT---PIPPVL-TTTATTPAATSSTVTPSSALGTTHTPPVPNTTAT 3456
Query: 198 AVKASIPA----------TSAVQNVL-----INPSLIGSKNILITTNMMSSQNTANESSN 242
S+P TSA +L PS + S TT+ A S +
Sbjct: 3457 THGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTPAATTSTTQHSTPALSSPH 3516
Query: 243 ALKRKRE 249
R E
Sbjct: 3517 PSSRTTE 3523
Score = 28.1 bits (61), Expect = 8.2
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 137 STSAGRITVPRLSVGSVTSR---PSTPTLGTPTPQTMSVSTKV-GTPMSLTGQRFTVQMP 192
+TS +T + + T+R +T T+ T + T S ST+ GTP SLT T+
Sbjct: 4634 TTSGSTVTPSSIPGTTHTARVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITAT 4693
Query: 193 --TSQSPAVKASIPATSAVQNVLINPSLIGSK 222
T+ + + P T + + P+ SK
Sbjct: 4694 GSTTNPSSTPGTTPITPVLTSTATTPAATSSK 4725
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 35.0 bits (79), Expect = 0.067
Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 20/161 (12%)
Query: 103 PLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTP-- 160
PLP +P GP LP ++ LTA N + S + P +S ++ + P
Sbjct: 1170 PLPPEEPPEGPALPTEQSALTAENTWPTEVPSSPSEESVSQPEPPVSQSEISEPSAVPTD 1229
Query: 161 -----------------TLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASI 203
T+ P P+ S T ++ + V +P + +
Sbjct: 1230 YSVSASDPSVLVSEAAVTVPEPPPEPESSITLTPVESAVVAEEHEV-VPERPVTCMVSET 1288
Query: 204 PATSAVQNVLINPSLIGSKNILITTNMMSSQNTANESSNAL 244
PA SA VL + + S+ +M +S + A+E S +L
Sbjct: 1289 PAMSAEPTVLASEPPVMSETAETFDSMRASGHVASEVSTSL 1329
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 35.0 bits (79), Expect = 0.067
Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 20/161 (12%)
Query: 103 PLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTP-- 160
PLP +P GP LP ++ LTA N + S + P +S ++ + P
Sbjct: 1170 PLPPEEPPEGPALPTEQSALTAENTWPTEVPSSPSEESVSQPEPPVSQSEISEPSAVPTD 1229
Query: 161 -----------------TLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASI 203
T+ P P+ S T ++ + V +P + +
Sbjct: 1230 YSVSASDPSVLVSEAAVTVPEPPPEPESSITLTPVESAVVAEEHEV-VPERPVTCMVSET 1288
Query: 204 PATSAVQNVLINPSLIGSKNILITTNMMSSQNTANESSNAL 244
PA SA VL + + S+ +M +S + A+E S +L
Sbjct: 1289 PAMSAEPTVLASEPPVMSETAETFDSMRASGHVASEVSTSL 1329
>gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 34.7 bits (78), Expect = 0.088
Identities = 12/15 (80%), Positives = 15/15 (100%)
Query: 249 EDDDDDDDDDDDYDN 263
+DDDDDDDDDDD+D+
Sbjct: 159 DDDDDDDDDDDDFDD 173
Score = 32.0 bits (71), Expect = 0.57
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 249 EDDDDDDDDDDD 260
EDDDDDDDDDDD
Sbjct: 158 EDDDDDDDDDDD 169
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 249 EDDDDDDDDDDDYD 262
++DDDDDDDDDD D
Sbjct: 157 DEDDDDDDDDDDDD 170
Score = 30.0 bits (66), Expect = 2.2
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 250 DDDDDDDDDDDYDN 263
D+DDDDDDDDD D+
Sbjct: 157 DEDDDDDDDDDDDD 170
Score = 28.1 bits (61), Expect = 8.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 245 KRKREDDDDDDDDDDDYDN 263
K K D+DDDDDDDD D+
Sbjct: 151 KVKLAVDEDDDDDDDDDDD 169
>gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 34.7 bits (78), Expect = 0.088
Identities = 12/15 (80%), Positives = 15/15 (100%)
Query: 249 EDDDDDDDDDDDYDN 263
+DDDDDDDDDDD+D+
Sbjct: 159 DDDDDDDDDDDDFDD 173
Score = 32.0 bits (71), Expect = 0.57
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 249 EDDDDDDDDDDD 260
EDDDDDDDDDDD
Sbjct: 158 EDDDDDDDDDDD 169
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 249 EDDDDDDDDDDDYD 262
++DDDDDDDDDD D
Sbjct: 157 DEDDDDDDDDDDDD 170
Score = 30.0 bits (66), Expect = 2.2
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 250 DDDDDDDDDDDYDN 263
D+DDDDDDDDD D+
Sbjct: 157 DEDDDDDDDDDDDD 170
Score = 28.1 bits (61), Expect = 8.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 245 KRKREDDDDDDDDDDDYDN 263
K K D+DDDDDDDD D+
Sbjct: 151 KVKLAVDEDDDDDDDDDDD 169
>gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 34.7 bits (78), Expect = 0.088
Identities = 12/15 (80%), Positives = 15/15 (100%)
Query: 249 EDDDDDDDDDDDYDN 263
+DDDDDDDDDDD+D+
Sbjct: 159 DDDDDDDDDDDDFDD 173
Score = 32.0 bits (71), Expect = 0.57
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 249 EDDDDDDDDDDD 260
EDDDDDDDDDDD
Sbjct: 158 EDDDDDDDDDDD 169
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 249 EDDDDDDDDDDDYD 262
++DDDDDDDDDD D
Sbjct: 157 DEDDDDDDDDDDDD 170
Score = 30.0 bits (66), Expect = 2.2
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 250 DDDDDDDDDDDYDN 263
D+DDDDDDDDD D+
Sbjct: 157 DEDDDDDDDDDDDD 170
Score = 28.1 bits (61), Expect = 8.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 245 KRKREDDDDDDDDDDDYDN 263
K K D+DDDDDDDD D+
Sbjct: 151 KVKLAVDEDDDDDDDDDDD 169
>gi|41350214 asporin [Homo sapiens]
Length = 380
Score = 34.7 bits (78), Expect = 0.088
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
+DDDDDDDDDDD DN
Sbjct: 40 DDDDDDDDDDDDEDN 54
Score = 32.7 bits (73), Expect = 0.33
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 242 NALKRKREDDDDDDDDDDDYDN 263
N + + ED DDDDDDDDD D+
Sbjct: 28 NMMLKDMEDTDDDDDDDDDDDD 49
Score = 32.0 bits (71), Expect = 0.57
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 244 LKRKREDDDDDDDDDDDYDN 263
LK + DDDDDDDDDD D+
Sbjct: 31 LKDMEDTDDDDDDDDDDDDD 50
Score = 32.0 bits (71), Expect = 0.57
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 249 EDDDDDDDDDDDYD 262
+DDDDDDDDDDD D
Sbjct: 38 DDDDDDDDDDDDDD 51
Score = 31.6 bits (70), Expect = 0.74
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 250 DDDDDDDDDDDYDN 263
DDDDDDDDDDD D+
Sbjct: 38 DDDDDDDDDDDDDD 51
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 249 EDDDDDDDDDDDYDNL 264
+DDDDDDDDDD+ ++L
Sbjct: 41 DDDDDDDDDDDEDNSL 56
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 34.7 bits (78), Expect = 0.088
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 231 MSSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
MSS +T ++ S+A + ED DD+DDDD+D D+
Sbjct: 1888 MSSISTDHQFSDAEESDGEDGDDNDDDDEDEDD 1920
>gi|239751395 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 34.3 bits (77), Expect = 0.11
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGT 164
P + P S P L P P+ +L ++ + + P L+ + +R STPTL
Sbjct: 40 PTLTPSSPPTLTPSNTPTLTPS-NTPTLTPSSTPTLTPSSTPTLTPQPILTRSSTPTLTP 98
Query: 165 PTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPS 217
+P T++ S TP +LT P++ +S P + + PS
Sbjct: 99 SSPPTLTPS---NTP-TLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPS 147
>gi|239745904 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 34.3 bits (77), Expect = 0.11
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGT 164
P + P S P L P P+ +L ++ + + P L+ + +R STPTL
Sbjct: 40 PTLTPSSPPTLTPSNTPTLTPS-NTPTLTPSSTPTLTPSSTPTLTPQPILTRSSTPTLTP 98
Query: 165 PTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPS 217
+P T++ S TP +LT P++ +S P + + PS
Sbjct: 99 SSPPTLTPS---NTP-TLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPS 147
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.3 bits (77), Expect = 0.11
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 109 PYSGPRLPPDRYCLTAPNYRLKSLQKKASTSA--GRITVPRLSVGSVTSRPSTPT-LGTP 165
P GP P ++ T P S + +T + G T P + S P+TP+ G P
Sbjct: 950 PKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAP 1009
Query: 166 TPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPS 217
TP ++ + G+P + + P + P+ K S AT + P+
Sbjct: 1010 TPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPA 1061
Score = 30.0 bits (66), Expect = 2.2
Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 109 PYSGPRLPPDRYCLTAPNYRLKSLQKKAST----------SAGRITVPRLSVGSVTSRPS 158
P GP +P + T+P S +K +T S G +T P ++ S+ P+
Sbjct: 1389 PKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPA 1448
Query: 159 T--PTLGTPTPQTMSVST-KVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLIN 215
T P G TP + T TP S Q+ TS SP PAT A
Sbjct: 1449 TSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSP---KKAPATPAPMGAPTL 1505
Query: 216 PSLIGSKNILITTNMMSSQNTANESSNALKRK 247
P++I S + S ++ ++ L +K
Sbjct: 1506 PAVIPSSPKEVPATPSSRRDPIAPTATLLSKK 1537
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 33.9 bits (76), Expect = 0.15
Identities = 28/102 (27%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Query: 117 PDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKV 176
P +AP R S ++TS T + S S P+T PT T S T
Sbjct: 1907 PTARTTSAPTTRTTSASPASTTSGPGNTPSPVPTTSTISAPTTSITSAPTTSTTSAPTSS 1966
Query: 177 GTPMSLTGQRFTVQMPTSQSPAVK-ASIPATSAVQNVLINPS 217
T T T+ SP S P TS PS
Sbjct: 1967 TTSAPTTSTTSAPTSSTTSSPQTSTTSAPTTSTTSGPGTTPS 2008
Score = 31.6 bits (70), Expect = 0.74
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 102 TPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPT 161
TP P+ P + P +AP S ++TSA + S TS P T T
Sbjct: 1934 TPSPV--PTTSTISAPTTSITSAPTTSTTSAPTSSTTSAPTTSTTSAPTSSTTSSPQTST 1991
Query: 162 LGTPTPQTMSVSTKVGTPMSLT 183
PT T S +P+ T
Sbjct: 1992 TSAPTTSTTSGPGTTPSPVPTT 2013
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 136 ASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQ 195
+++S+ T P + + +R S + + TP T+S+ST TP T T
Sbjct: 1482 STSSSPAQTTPPTTSKTTETRASGSSAPSSTPGTVSLSTARTTPAPGTATSVKKTFSTPS 1541
Query: 196 SPAVKASIPATSAVQNVLINPSLIGSKNIL 225
P V A+ +TS++ S++ SK L
Sbjct: 1542 PPPVPAT--STSSMSTTTPGTSVVSSKPTL 1569
Score = 29.6 bits (65), Expect = 2.8
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 109 PYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQ 168
P + P P ++AP + S ++TSA + S TS P++ T +P
Sbjct: 1931 PGNTPSPVPTTSTISAPTTSITSAPTTSTTSAPTSSTTSAPTTSTTSAPTSSTTSSPQTS 1990
Query: 169 TMSVST 174
T S T
Sbjct: 1991 TTSAPT 1996
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 33.9 bits (76), Expect = 0.15
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
SS +E + + ED+DDD+DDD+D DN
Sbjct: 675 SSSEDESEDGDENEEDDEDEDDDEDDDEDEDN 706
Score = 33.1 bits (74), Expect = 0.26
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYD 262
S ++ +ES + + + +D+D+DDD+DDD D
Sbjct: 673 SESSSEDESEDGDENEEDDEDEDDDEDDDED 703
Score = 32.0 bits (71), Expect = 0.57
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDD 260
SS++++ + S EDD+D+DDD+DD
Sbjct: 672 SSESSSEDESEDGDENEEDDEDEDDDEDD 700
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 229 NMMSSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
N SS+ T S + + ED+DD+D+D+++ D+
Sbjct: 626 NPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDD 660
Score = 28.9 bits (63), Expect = 4.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 233 SQNTANESSNALKRKREDDDDDDDDDDDYD 262
S +++E + + E+DD+D+DDD+D D
Sbjct: 672 SSESSSEDESEDGDENEEDDEDEDDDEDDD 701
Score = 28.1 bits (61), Expect = 8.2
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
SS++ + S ++ + + ED D++++DD+D D+
Sbjct: 665 SSEDGGDSSESSSEDESEDGDENEEDDEDEDD 696
Score = 28.1 bits (61), Expect = 8.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
S + + N + EDDD+DDD+D+D ++
Sbjct: 677 SEDESEDGDENEEDDEDEDDDEDDDEDEDNES 708
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 33.9 bits (76), Expect = 0.15
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
SS +E + + ED+DDD+DDD+D DN
Sbjct: 675 SSSEDESEDGDENEEDDEDEDDDEDDDEDEDN 706
Score = 33.1 bits (74), Expect = 0.26
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYD 262
S ++ +ES + + + +D+D+DDD+DDD D
Sbjct: 673 SESSSEDESEDGDENEEDDEDEDDDEDDDED 703
Score = 32.0 bits (71), Expect = 0.57
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDD 260
SS++++ + S EDD+D+DDD+DD
Sbjct: 672 SSESSSEDESEDGDENEEDDEDEDDDEDD 700
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 229 NMMSSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
N SS+ T S + + ED+DD+D+D+++ D+
Sbjct: 626 NPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDD 660
Score = 28.9 bits (63), Expect = 4.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 233 SQNTANESSNALKRKREDDDDDDDDDDDYD 262
S +++E + + E+DD+D+DDD+D D
Sbjct: 672 SSESSSEDESEDGDENEEDDEDEDDDEDDD 701
Score = 28.1 bits (61), Expect = 8.2
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
SS++ + S ++ + + ED D++++DD+D D+
Sbjct: 665 SSEDGGDSSESSSEDESEDGDENEEDDEDEDD 696
Score = 28.1 bits (61), Expect = 8.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
S + + N + EDDD+DDD+D+D ++
Sbjct: 677 SEDESEDGDENEEDDEDEDDDEDDDEDEDNES 708
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 33.9 bits (76), Expect = 0.15
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
SS +E + + ED+DDD+DDD+D DN
Sbjct: 712 SSSEDESEDGDENEEDDEDEDDDEDDDEDEDN 743
Score = 33.1 bits (74), Expect = 0.26
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYD 262
S ++ +ES + + + +D+D+DDD+DDD D
Sbjct: 710 SESSSEDESEDGDENEEDDEDEDDDEDDDED 740
Score = 32.0 bits (71), Expect = 0.57
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDD 260
SS++++ + S EDD+D+DDD+DD
Sbjct: 709 SSESSSEDESEDGDENEEDDEDEDDDEDD 737
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 229 NMMSSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
N SS+ T S + + ED+DD+D+D+++ D+
Sbjct: 663 NPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDD 697
Score = 28.9 bits (63), Expect = 4.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 233 SQNTANESSNALKRKREDDDDDDDDDDDYD 262
S +++E + + E+DD+D+DDD+D D
Sbjct: 709 SSESSSEDESEDGDENEEDDEDEDDDEDDD 738
Score = 28.1 bits (61), Expect = 8.2
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
SS++ + S ++ + + ED D++++DD+D D+
Sbjct: 702 SSEDGGDSSESSSEDESEDGDENEEDDEDEDD 733
Score = 28.1 bits (61), Expect = 8.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 232 SSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
S + + N + EDDD+DDD+D+D ++
Sbjct: 714 SEDESEDGDENEEDDEDEDDDEDDDEDEDNES 745
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 33.5 bits (75), Expect = 0.20
Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 27/164 (16%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAS-----TSAGRITVPRLSVGSVTSRPST 159
P P + LP R T P + +S T + T P ++ + T +
Sbjct: 4970 PSSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTP 5029
Query: 160 PTLGTPTPQTMSVST-----KVGTPMSLTGQRFTVQMPT----------SQSPAVKASIP 204
T+ T T T + +T V TP S G T ++PT S SP + P
Sbjct: 5030 ETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPP 5089
Query: 205 ATSAVQNVLI-----NPSLIGSKNILITTNMM--SSQNTANESS 241
T+ + + P + +L TT M ++ +TA SS
Sbjct: 5090 TTTPMSTMSTIHTSSTPETTHTSTVLTTTATMTRATNSTATPSS 5133
Score = 32.7 bits (73), Expect = 0.33
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 19/149 (12%)
Query: 84 TSPPPRDFLLDIARQR--NQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAG 141
T+PPP+ + P P + LP R T P S+ S+S G
Sbjct: 2625 TAPPPKVLTTTATTPTVTSSKATPSSSPGTATALPALRSTATTPT--ATSVTPIPSSSLG 2682
Query: 142 -------RITVPRLSVGSVT--SRPSTP---TLGTPTPQTMSVSTKVGTPMSLTGQRFTV 189
+ T P ++ + T S P T T+ T T T + V TP S G T
Sbjct: 2683 TTWTRLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGSVATPSSTPGTAHTT 2742
Query: 190 QMPTSQS---PAVKASIPATSAVQNVLIN 215
++PT+ + A +S P T+ V I+
Sbjct: 2743 KVPTTTTTGFTATPSSSPGTALTPPVWIS 2771
Score = 32.0 bits (71), Expect = 0.57
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAS-----TSAGRITVPRLSVGSVTSRPST 159
P P + LP R T P + +S T + T P ++ + T +
Sbjct: 3795 PSSSPGTATALPALRSTATTPTATSVTAIPSSSLGTAWTRLSQTTTPTATMSTATPSSTP 3854
Query: 160 PTLGTPTPQTMSVST-----KVGTPMSLTGQRFTVQMPTSQS---PAVKASIPATSAVQN 211
T+ T T T + +T V TP S G T ++PT+ + A +S P T+
Sbjct: 3855 ETVHTSTVLTTTTTTTRATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPP 3914
Query: 212 VLIN 215
V I+
Sbjct: 3915 VWIS 3918
Score = 31.6 bits (70), Expect = 0.74
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGT 164
P P + LP R T P S S+S G T RLS T+ +T + T
Sbjct: 3150 PFSSPGTATALPALRSTATTPT--ATSFTAIPSSSLGT-TWTRLS--QTTTPTATMSTAT 3204
Query: 165 P--TPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPS 217
P TP+T+ ST + T + TG +V P+S + T+ PS
Sbjct: 3205 PSSTPETVHTSTVLTTTATTTGATGSVATPSSTPGTAHTTKVLTTTTTGFTATPS 3259
Score = 30.4 bits (67), Expect = 1.7
Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 23/150 (15%)
Query: 105 PLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAS-----TSAGRITVPRLSVGSVTSRPST 159
P P + LP R T P + +S T + T P ++ + T +
Sbjct: 4297 PFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTP 4356
Query: 160 PTLGTPTPQTMSVST-----KVGTPMSLTGQRFTVQMPTSQS---PAVKASIPATSAVQN 211
T T T T + +T V TP S G T ++PT+ + +S P T+
Sbjct: 4357 ETAHTSTVLTTTATTTRATGSVATPSSTPGTAHTTKVPTTTTTGFTVTPSSSPGTARTPP 4416
Query: 212 VLINPSLIGSKNILITTNMMSSQNTANESS 241
V I+ TT +S +T SS
Sbjct: 4417 VWIS----------TTTTPTTSGSTVTPSS 4436
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 33.5 bits (75), Expect = 0.20
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
EDDDDDDDDDDD D+
Sbjct: 263 EDDDDDDDDDDDDDD 277
Score = 32.7 bits (73), Expect = 0.33
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
+DDDDDDDDDDD D+
Sbjct: 266 DDDDDDDDDDDDEDD 280
Score = 32.0 bits (71), Expect = 0.57
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
EDD+DDDDDDDD D+
Sbjct: 260 EDDEDDDDDDDDDDD 274
Score = 30.8 bits (68), Expect = 1.3
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
+D+DDDDDDDDD D+
Sbjct: 261 DDEDDDDDDDDDDDD 275
Score = 30.8 bits (68), Expect = 1.3
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
++DDDDDDDDDD D+
Sbjct: 262 DEDDDDDDDDDDDDD 276
Score = 30.8 bits (68), Expect = 1.3
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 249 EDDDDDDDDDDDYD 262
+DDDDDDDD+DD D
Sbjct: 269 DDDDDDDDDEDDED 282
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
ED+DD+DDDDDD D+
Sbjct: 258 EDEDDEDDDDDDDDD 272
Score = 30.0 bits (66), Expect = 2.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 227 TTNMMSSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
T N S ++ E + +D+DD+DDDDD D+
Sbjct: 235 TDNQEGSVESSEEGEDQEHEDDGEDEDDEDDDDDDDD 271
Score = 29.3 bits (64), Expect = 3.7
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
++DD+DDDDDDD D+
Sbjct: 259 DEDDEDDDDDDDDDD 273
Score = 28.1 bits (61), Expect = 8.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 227 TTNMMSSQNTANESSNALKRKREDDDDDDDDDDDYDN 263
TT+ ++E + + + +D+DD+DDDD D+
Sbjct: 234 TTDNQEGSVESSEEGEDQEHEDDGEDEDDEDDDDDDD 270
Score = 28.1 bits (61), Expect = 8.2
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
+DDDDDD+DD+D ++
Sbjct: 271 DDDDDDDEDDEDEED 285
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 33.5 bits (75), Expect = 0.20
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 249 EDDDDDDDDDDDYDN 263
EDDDDDDDDDDD D+
Sbjct: 245 EDDDDDDDDDDDDDD 259
Score = 32.7 bits (73), Expect = 0.33
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 247 KREDDDDDDDDDDDYDN 263
+ +DDDDDDDDDDD D+
Sbjct: 244 EEDDDDDDDDDDDDDDD 260
Score = 32.7 bits (73), Expect = 0.33
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 249 EDDDDDDDDDDDYDNL 264
+DDDDDDDDDDD D++
Sbjct: 247 DDDDDDDDDDDDDDDV 262
Score = 28.9 bits (63), Expect = 4.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 245 KRKREDDDDDDDDDDDYDN 263
+ + ++DDDDDDDDD D+
Sbjct: 239 RHQGHEEDDDDDDDDDDDD 257
>gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]
Length = 1507
Score = 33.1 bits (74), Expect = 0.26
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 231 MSSQNTANESSNALKRKREDDDDDDDDDDDYDNL 264
++ E +++ EDDD+DDDD DD D L
Sbjct: 1394 LAEDEDEEEDQEEEEQEEEDDDEDDDDTDDLDEL 1427
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,373,415
Number of Sequences: 37866
Number of extensions: 494105
Number of successful extensions: 4991
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 3435
Number of HSP's gapped (non-prelim): 1163
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.