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Search of human proteins with 4506561
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506561 ring finger protein 4 [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506561 ring finger protein 4 [Homo sapiens] 389 e-109
gi|239747623 PREDICTED: hypothetical protein XP_002347917 [Homo ... 365 e-101
gi|88943822 PREDICTED: hypothetical protein LOC644006 [Homo sapi... 362 e-101
gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens] 361 e-100
gi|51479192 ring finger protein 1 [Homo sapiens] 49 3e-06
gi|6005747 ring finger protein 2 [Homo sapiens] 47 8e-06
gi|15208660 tripartite motif protein 21 [Homo sapiens] 47 8e-06
gi|8923898 zinc finger protein 313 [Homo sapiens] 47 1e-05
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 45 3e-05
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 45 3e-05
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 44 1e-04
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 44 1e-04
gi|37595555 ring finger protein 125 [Homo sapiens] 44 1e-04
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 44 1e-04
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 43 2e-04
gi|30520320 ring finger protein 166 [Homo sapiens] 42 2e-04
gi|31742478 ring finger protein 3 [Homo sapiens] 42 3e-04
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 41 5e-04
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 41 5e-04
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 41 5e-04
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 41 5e-04
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 41 5e-04
gi|21071001 autocrine motility factor receptor [Homo sapiens] 41 7e-04
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 41 7e-04
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 41 7e-04
gi|87241872 ring finger protein 151 [Homo sapiens] 41 7e-04
gi|24025688 ligand of numb-protein X 2 [Homo sapiens] 40 0.001
gi|33859668 Rabring 7 [Homo sapiens] 40 0.001
gi|5902054 ring finger protein 5 [Homo sapiens] 40 0.002
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 40 0.002
>gi|4506561 ring finger protein 4 [Homo sapiens]
Length = 190
Score = 389 bits (1000), Expect = e-109
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
Sbjct: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
Query: 61 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG 120
LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG
Sbjct: 61 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG 120
Query: 121 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
Sbjct: 121 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
Query: 181 NHKRYHPIYI 190
NHKRYHPIYI
Sbjct: 181 NHKRYHPIYI 190
>gi|239747623 PREDICTED: hypothetical protein XP_002347917 [Homo
sapiens]
Length = 190
Score = 365 bits (936), Expect = e-101
Identities = 179/190 (94%), Positives = 183/190 (96%)
Query: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
Sbjct: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
Query: 61 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG 120
LTHNDSVVIVD+RRRPRRNARRLPQDHADSC+VSSDDE LSRDRDVYVTTHT RN RDEG
Sbjct: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
Query: 121 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
ATGLRPSGTV CPICMD YSEIVQN RLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
Sbjct: 121 ATGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
Query: 181 NHKRYHPIYI 190
NHK+YH I+I
Sbjct: 181 NHKQYHSIHI 190
>gi|88943822 PREDICTED: hypothetical protein LOC644006 [Homo
sapiens]
Length = 190
Score = 362 bits (930), Expect = e-101
Identities = 178/190 (93%), Positives = 182/190 (95%)
Query: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
Sbjct: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
Query: 61 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG 120
LTHNDSVVIVD+RRRPRRNARRLPQDHADSC+VSSDDE LSRDRDVYVTTHT RN RDEG
Sbjct: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
Query: 121 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
A GLRPSGTV CPICMD YSEIVQN RLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
Sbjct: 121 AIGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
Query: 181 NHKRYHPIYI 190
NHK+YH I+I
Sbjct: 181 NHKQYHSIHI 190
>gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens]
Length = 190
Score = 361 bits (926), Expect = e-100
Identities = 178/190 (93%), Positives = 182/190 (95%)
Query: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
Sbjct: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
Query: 61 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG 120
LTHNDSVVIVD+RRRPRRNARRLPQDHADS +VSSDDE LSRDRDVYVTTHT RN RDEG
Sbjct: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSSMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
Query: 121 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
ATGLRPSGTV CPICMD YSEIVQN RLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
Sbjct: 121 ATGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
Query: 181 NHKRYHPIYI 190
NHK+YH I+I
Sbjct: 181 NHKQYHSIHI 190
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 48.5 bits (114), Expect = 3e-06
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 106 VYVTTHTPRNARDEGAT-GLRPSGTVS---CPICMDGYSEIVQNGRLIVSTECGHVFCSQ 161
+Y TP+ A +G + P S CPIC+D +++N + + EC H FCS
Sbjct: 18 LYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLD----MLKN--TMTTKECLHRFCSD 71
Query: 162 CLRDSLKNAN-TCPTCRKKINHKR 184
C+ +L++ N CPTCRKK+ KR
Sbjct: 72 CIVTALRSGNKECPTCRKKLVSKR 95
>gi|6005747 ring finger protein 2 [Homo sapiens]
Length = 336
Score = 47.4 bits (111), Expect = 8e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 106 VYVTTHTPRNARDEG----ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 161
+Y TP+ A +G + + CPIC+D +++N + + EC H FC+
Sbjct: 21 LYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLD----MLKN--TMTTKECLHRFCAD 74
Query: 162 CLRDSLKNAN-TCPTCRKKINHKR 184
C+ +L++ N CPTCRKK+ KR
Sbjct: 75 CIITALRSGNKECPTCRKKLVSKR 98
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 47.4 bits (111), Expect = 8e-06
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 130 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHP 187
V+CPIC+D + E V S ECGH FC +C+ K + CP CR++ K P
Sbjct: 14 VTCPICLDPFVEPV-------SIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLRP 65
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 126 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI 180
P G +CP+C++ Y + VQ CGHVFCS CL++ LK C CR +
Sbjct: 23 PLGRFTCPVCLEVYEKPVQ-------VPCGHVFCSACLQECLKPKKPVCGVCRSAL 71
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 45.4 bits (106), Expect = 3e-05
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 132 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 182
CPIC D E T+CGH FC +C+ SL++ N CP C +++
Sbjct: 136 CPICFDMIEEAYM-------TKCGHSFCYKCIHQSLEDNNRCPKCNYVVDN 179
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 45.4 bits (106), Expect = 3e-05
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 132 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 182
CPIC D E T+CGH FC +C+ SL++ N CP C +++
Sbjct: 136 CPICFDMIEEAYM-------TKCGHSFCYKCIHQSLEDNNRCPKCNYVVDN 179
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 43.5 bits (101), Expect = 1e-04
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 130 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 185
+ C IC + + E V + C H FCS C+ + +K CP CRK I K Y
Sbjct: 401 LQCIICSEYFIEAV-------TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTY 449
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 43.5 bits (101), Expect = 1e-04
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 23/108 (21%)
Query: 86 DHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEGATGLRPSGTV--------------- 130
+H D +DE S + D+ + + ++ D+G T L +GT
Sbjct: 49 EHGDG--TDGEDEGASEEEDLEDRSGS-EDSEDDGETLLEVAGTQGKLEAAGSFNSDDDA 105
Query: 131 -SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 177
SCPIC++ + + C H FC C+ + KNAN+CP R
Sbjct: 106 ESCPICLNAFRDQAVG----TPENCAHYFCLDCIVEWSKNANSCPVDR 149
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 43.5 bits (101), Expect = 1e-04
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 126 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 177
P + C +C++ + V+ T CGHVFC C+ SLKN TCP CR
Sbjct: 31 PVTSFDCAVCLEVLHQPVR-------TRCGHVFCRSCIATSLKNNKWTCPYCR 76
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 43.5 bits (101), Expect = 1e-04
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 132 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-----CPTCRK 178
CPIC + E V ST CGH+FC CL ++ A+ CP CRK
Sbjct: 14 CPICQESLKEAV-------STNCGHLFCRVCLTQHVEKASASGVFCCPLCRK 58
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 81 RRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEGATGLRPSGT-VSCPICMDGY 139
R+ P D D+ +++ + +D ++ N+ E + GL T C +CM
Sbjct: 401 RQFPDDVEDAPDLNAPGKIPKKD----LSLQRSPNSETEESQGLSLDVTDFECALCM--- 453
Query: 140 SEIVQNGRLI---VSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 181
RL+ V+T CGH FC +CL L +A CP C+ K++
Sbjct: 454 -------RLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLS 491
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 42.4 bits (98), Expect = 2e-04
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 120 GATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRK 178
G +GL T CPIC++ Y V G CGH FC +CL+ L+ + CP CR
Sbjct: 23 GDSGLEAQYT--CPICLEVYHRPVAIG------SCGHTFCGECLQPCLQVPSPLCPLCRL 74
Query: 179 KINHKR 184
+ K+
Sbjct: 75 PFDPKK 80
>gi|31742478 ring finger protein 3 [Homo sapiens]
Length = 242
Score = 42.0 bits (97), Expect = 3e-04
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 152 TECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 188
TEC H FC CL L+ NTCPTCR I+ HP+
Sbjct: 31 TECLHTFCRSCLVKYLEENNTCPTCRIVIHQS--HPL 65
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 41.2 bits (95), Expect = 5e-04
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 124 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL-RDSLK-----NANTCPTCR 177
L P+ V C IC+ + + +L +CGHVFC +CL R SL NA CP CR
Sbjct: 56 LPPASPVECLICVSSFDGVF---KLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCR 112
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 41.2 bits (95), Expect = 5e-04
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 124 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL-RDSLK-----NANTCPTCR 177
L P+ V C IC+ + + +L +CGHVFC +CL R SL NA CP CR
Sbjct: 56 LPPASPVECLICVSSFDGVF---KLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCR 112
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 41.2 bits (95), Expect = 5e-04
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 124 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL-RDSLK-----NANTCPTCR 177
L P+ V C IC+ + + +L +CGHVFC +CL R SL NA CP CR
Sbjct: 56 LPPASPVECLICVSSFDGVF---KLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCR 112
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 41.2 bits (95), Expect = 5e-04
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 130 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRK 178
+ CPICM+ ++E +L+ CGH C QCL L N CP C K
Sbjct: 18 LECPICMESFTEEQLRPKLL---HCGHTICRQCLEKLLASSINGVRCPFCSK 66
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 41.2 bits (95), Expect = 5e-04
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 130 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRK 178
+ CPICM+ ++E +L+ CGH C QCL L N CP C K
Sbjct: 18 LECPICMESFTEEQLRPKLL---HCGHTICRQCLEKLLASSINGVRCPFCSK 66
>gi|21071001 autocrine motility factor receptor [Homo sapiens]
Length = 643
Score = 40.8 bits (94), Expect = 7e-04
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 132 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 181
C IC D +Q R + CGH+F + CLR L+ +CPTCR +N
Sbjct: 341 CAICWDS----MQAARKL---PCGHLFHNSCLRSWLEQDTSCPTCRMSLN 383
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 40.8 bits (94), Expect = 7e-04
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 129 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRY 185
T C IC+D + V + CGH+FC CL L+ N CP C+ I+ +
Sbjct: 36 TFECNICLDTAKDAV-------ISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 186 HPIY 189
P+Y
Sbjct: 89 IPLY 92
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 40.8 bits (94), Expect = 7e-04
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 129 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRY 185
T C IC+D + V + CGH+FC CL L+ N CP C+ I+ +
Sbjct: 36 TFECNICLDTAKDAV-------ISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 186 HPIY 189
P+Y
Sbjct: 89 IPLY 92
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 40.8 bits (94), Expect = 7e-04
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 126 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 184
P C +C + + + RL C H+FC +C+ L TCP CRK++ K+
Sbjct: 14 PDSNFVCSVC---HGVLKRPARL----PCSHIFCKKCILRWLARQKTCPCCRKEVKRKK 65
>gi|24025688 ligand of numb-protein X 2 [Homo sapiens]
Length = 690
Score = 40.4 bits (93), Expect = 0.001
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 150 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 183
+ T CGH FC +CLR+ L+ + CP RK+++ K
Sbjct: 61 LDTPCGHTFCYKCLRNFLQEKDFCPLDRKRLHFK 94
>gi|33859668 Rabring 7 [Homo sapiens]
Length = 304
Score = 40.0 bits (92), Expect = 0.001
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 130 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 181
+ CP+C + Y+ + +L C H F S C+ L+ +TCP CRK +N
Sbjct: 226 LECPVCKEDYTVEEEVRQL----PCNHFFHSSCIVPWLELHDTCPVCRKSLN 273
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 117 RDEGATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTC 173
R+ G G T C IC++ R V + CGH++C CL L+ C
Sbjct: 16 RERGGAG----ATFECNICLE-------TAREAVVSVCGHLYCWPCLHQWLETRPERQEC 64
Query: 174 PTCRKKINHKRYHPIY 189
P C+ I+ ++ P+Y
Sbjct: 65 PVCKAGISREKVVPLY 80
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 132 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
C +CM + E V +T CGH FC CL L +A CP C++ +
Sbjct: 479 CSLCMRLFFEPV-------TTPCGHSFCKNCLERCLDHAPYCPLCKESL 520
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 150 VSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
V+ CGH +C +CLR L+ C CR ++
Sbjct: 134 VTVPCGHSYCRRCLRRELR--ARCRLCRDRL 162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,509,329
Number of Sequences: 37866
Number of extensions: 327015
Number of successful extensions: 1441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 1264
Number of HSP's gapped (non-prelim): 349
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.