Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD33 Sequence: fasta or formatted (364aa) NCBI GI: 130979981
Description:

CD33 antigen isoform 1 precursor

Referenced in:

Lectin Families
Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [237aa] CD33 antigen isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         23           2
 C cysteine            2.5          9           1
 D aspartate           3.6         13           1
 E glutamate           4.7         17           2
 F phenylalanine       3.6         13           2
 G glycine             8.0         29           2
 H histidine           3.8         14           1
 I isoleucine          3.8         14           2
 K lysine              4.1         15           2
 L leucine             9.1         33           5
 M methionine          1.4          5           1
 N asparagine          3.6         13           2
 P proline             7.4         27           2
 Q glutamine           4.1         15           1
 R arginine            5.5         20           3
 S serine              8.5         31           2
 T threonine           9.6         35           2
 V valine              6.6         24           2
 W tryptophan          1.4          5           1
 Y tyrosine            2.5          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD33 antigen isoform 1 precursor 
CD33                  0.606   CD33 antigen isoform 2 precursor 
SIGLEC6               0.411   sialic acid binding Ig-like lectin 6 isoform 1 prec...
SIGLEC6               0.411   sialic acid binding Ig-like lectin 6 isoform 3 prec...
SIGLEC6               0.393   sialic acid binding Ig-like lectin 6 isoform 2 prec...
SIGLEC8               0.387   sialic acid binding Ig-like lectin 8 
SIGLEC9               0.375   sialic acid binding Ig-like lectin 9 
SIGLEC7               0.375   sialic acid binding Ig-like lectin 7 isoform 1 
SIGLEC12              0.367   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.360   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC14              0.334   sialic acid binding Ig-like lectin 14 
SIGLEC5               0.323   sialic acid binding Ig-like lectin 5 
SIGLEC10              0.286   sialic acid binding Ig-like lectin 10 
SIGLEC11              0.260   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC11              0.260   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
SIGLEC7               0.250   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
MAG                   0.095   myelin associated glycoprotein isoform a precursor [...
MAG                   0.095   myelin associated glycoprotein isoform b precursor [...
CD22                  0.067   CD22 molecule 
SIGLEC1               0.063   sialoadhesin precursor 
SIGLEC15              0.055   sialic acid binding Ig-like lectin 15 
NPHS1                 0.026   nephrin precursor 
KIRREL                0.019   kin of IRRE like 
FCRL1                 0.016   Fc receptor-like 1 isoform 3 precursor 
FCRL1                 0.016   Fc receptor-like 1 isoform 1 precursor 
PVR                   0.014   poliovirus receptor isoform delta 
PVR                   0.014   poliovirus receptor isoform gamma 
PVR                   0.014   poliovirus receptor isoform beta 
PVR                   0.014   poliovirus receptor isoform alpha 
FCGR1A                0.012   Fc fragment of IgG, high affinity Ia, receptor (CD64...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press