Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 128485756
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|128485756 hexaribonucleotide binding protein 3 [Homo
sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens] 657 0.0
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens] 490 e-139
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 475 e-134
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 475 e-134
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens] 457 e-129
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens] 457 e-129
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens] 422 e-118
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens] 392 e-109
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens] 390 e-109
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens] 389 e-108
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens] 389 e-108
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens] 310 8e-85
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens] 306 2e-83
gi|37574731 boule isoform 1 [Homo sapiens] 77 3e-14
gi|14719414 boule isoform 2 [Homo sapiens] 70 3e-12
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 68 1e-11
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 68 1e-11
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 61 1e-09
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 61 1e-09
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 61 1e-09
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 60 2e-09
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 60 2e-09
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 60 2e-09
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 60 2e-09
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 58 9e-09
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 58 1e-08
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 57 2e-08
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 57 2e-08
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 57 2e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 57 3e-08
>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
Length = 312
Score = 657 bits (1694), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
Sbjct: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
Query: 61 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG 120
EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
Sbjct: 61 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG 120
Query: 121 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN 180
QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
Sbjct: 121 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN 180
Query: 181 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA 240
KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
Sbjct: 181 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA 240
Query: 241 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT 300
APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
Sbjct: 241 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT 300
Query: 301 IGPAATYSIGTM 312
IGPAATYSIGTM
Sbjct: 301 IGPAATYSIGTM 312
>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
Length = 370
Score = 490 bits (1262), Expect = e-139
Identities = 246/315 (78%), Positives = 262/315 (83%), Gaps = 8/315 (2%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
MAQPY AQ+ PP QNGIPAEY P PHP +Y+GQT VP EH + LY PAQTH EQ +
Sbjct: 21 MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 78
Query: 61 EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118
+ S Q ++GT T QTD+AA TD QP PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 79 DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 136
Query: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178
FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 137 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 196
Query: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTF 238
TNKKT NPYTNGWKLNPVVGAVY PEFYAV GFPYP A AYRGAHLRGRGR VYNTF
Sbjct: 197 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAVPGFPYPAATAAAAYRGAHLRGRGRTVYNTF 256
Query: 239 RAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPY 297
RAA PPPPIP YG VVYQDGFYGA+IYGGYAAYRYAQP A AAAYSDSYGRVY AADPY
Sbjct: 257 RAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVY-AADPY 315
Query: 298 HHTIGPAATYSIGTM 312
HH + PA TY +G M
Sbjct: 316 HHALAPAPTYGVGAM 330
>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 475 bits (1223), Expect = e-134
Identities = 246/342 (71%), Positives = 262/342 (76%), Gaps = 35/342 (10%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
MAQPY AQ+ PP QNGIPAEY P PHP +Y+GQT VP EH + LY PAQTH EQ +
Sbjct: 21 MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 78
Query: 61 EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118
+ S Q ++GT T QTD+AA TD QP PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 79 DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 136
Query: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178
FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 137 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 196
Query: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------------------------GF 211
TNKKT NPYTNGWKLNPVVGAVY PEFYA T GF
Sbjct: 197 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF 256
Query: 212 PYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAY 271
PYP A AYRGAHLRGRGR VYNTFRAA PPPPIP YG VVYQDGFYGA+IYGGYAAY
Sbjct: 257 PYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAY 316
Query: 272 RYAQPA-AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
RYAQP A AAAYSDSYGRVY AADPYHH + PA TY +G M
Sbjct: 317 RYAQPTPATAAAYSDSYGRVY-AADPYHHALAPAPTYGVGAM 357
>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 475 bits (1223), Expect = e-134
Identities = 246/342 (71%), Positives = 262/342 (76%), Gaps = 35/342 (10%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
MAQPY AQ+ PP QNGIPAEY P PHP +Y+GQT VP EH + LY PAQTH EQ +
Sbjct: 21 MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 78
Query: 61 EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118
+ S Q ++GT T QTD+AA TD QP PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 79 DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 136
Query: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178
FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 137 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 196
Query: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------------------------GF 211
TNKKT NPYTNGWKLNPVVGAVY PEFYA T GF
Sbjct: 197 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF 256
Query: 212 PYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAY 271
PYP A AYRGAHLRGRGR VYNTFRAA PPPPIP YG VVYQDGFYGA+IYGGYAAY
Sbjct: 257 PYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAY 316
Query: 272 RYAQPA-AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
RYAQP A AAAYSDSYGRVY AADPYHH + PA TY +G M
Sbjct: 317 RYAQPTPATAAAYSDSYGRVY-AADPYHHALAPAPTYGVGAM 357
>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
Length = 392
Score = 457 bits (1175), Expect = e-129
Identities = 240/343 (69%), Positives = 258/343 (75%), Gaps = 36/343 (10%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
MAQPY AQ+ PP QNGIPAEY P PHP +Y+GQT VP EH + LY PAQTH EQ +
Sbjct: 41 MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 98
Query: 61 EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118
+ S Q ++GT T QTD+AA TD QP PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 99 DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 156
Query: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178
FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 157 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 216
Query: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------------------------GF 211
TNKKT NPYTNGWKLNPVVGAVY PEFYA T GF
Sbjct: 217 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF 276
Query: 212 PYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAE-IYGGYAA 270
PYP A AYRGAHLRGRGR VYNTFRAA PPPPIP YG VVYQ+ YG + + GGYAA
Sbjct: 277 PYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAA 336
Query: 271 YRYAQPA-AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
YRYAQP A AAAYSDSYGRVY AADPYHH + PA TY +G M
Sbjct: 337 YRYAQPTPATAAAYSDSYGRVY-AADPYHHALAPAPTYGVGAM 378
>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
Length = 418
Score = 457 bits (1175), Expect = e-129
Identities = 240/343 (69%), Positives = 258/343 (75%), Gaps = 36/343 (10%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
MAQPY AQ+ PP QNGIPAEY P PHP +Y+GQT VP EH + LY PAQTH EQ +
Sbjct: 41 MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 98
Query: 61 EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118
+ S Q ++GT T QTD+AA TD QP PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 99 DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 156
Query: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178
FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 157 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 216
Query: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------------------------GF 211
TNKKT NPYTNGWKLNPVVGAVY PEFYA T GF
Sbjct: 217 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF 276
Query: 212 PYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAE-IYGGYAA 270
PYP A AYRGAHLRGRGR VYNTFRAA PPPPIP YG VVYQ+ YG + + GGYAA
Sbjct: 277 PYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAA 336
Query: 271 YRYAQPA-AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
YRYAQP A AAAYSDSYGRVY AADPYHH + PA TY +G M
Sbjct: 337 YRYAQPTPATAAAYSDSYGRVY-AADPYHHALAPAPTYGVGAM 378
>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
Length = 395
Score = 422 bits (1085), Expect = e-118
Identities = 225/326 (69%), Positives = 242/326 (74%), Gaps = 35/326 (10%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
MAQPY AQ+ PP QNGIPAEY P PHP +Y+GQT VP EH + LY PAQTH EQ +
Sbjct: 41 MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 98
Query: 61 EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118
+ S Q ++GT T QTD+AA TD QP PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 99 DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 156
Query: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178
FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 157 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 216
Query: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------------------------GF 211
TNKKT NPYTNGWKLNPVVGAVY PEFYA T GF
Sbjct: 217 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF 276
Query: 212 PYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAE-IYGGYAA 270
PYP A AYRGAHLRGRGR VYNTFRAA PPPPIP YG VVYQ+ YG + + GGYAA
Sbjct: 277 PYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAA 336
Query: 271 YRYAQPA-AAAAAYSDSYGRVYAAAD 295
YRYAQP A AAAYSD V+ AAD
Sbjct: 337 YRYAQPTPATAAAYSDRNQFVFVAAD 362
>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
Length = 451
Score = 392 bits (1008), Expect = e-109
Identities = 218/360 (60%), Positives = 238/360 (66%), Gaps = 61/360 (16%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
M QP+ +PPPPQNGIP EY P TQDY+GQT EH +TLY Q H EQ +
Sbjct: 91 MVQPFTTIPFPPPPQNGIPTEYGVPH---TQDYAGQTG---EHNLTLYGSTQAHGEQSSN 144
Query: 61 EASTQPIAGTQTVPQTDEAAQTD---SQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQ 117
STQ ++ QT+ AQTD SQ + K PKRLHVSNIPFRFRDPDLRQ
Sbjct: 145 SPSTQ----NGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQ 200
Query: 118 MFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
MFGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARV
Sbjct: 201 MFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 260
Query: 178 MTNKKTGNPYTNGWKLNPVVGAVYGPEFYA------------------------------ 207
MTNKK PY NGWKL+PVVGAVYGPE YA
Sbjct: 261 MTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPL 320
Query: 208 -----VTGFPYPTTG-TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYG 261
V GFPYPT TA A+RGAHLRGRGR VY RA PP IP Y VVYQDGFYG
Sbjct: 321 ISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYG 379
Query: 262 AEIYGGYAAYRYAQP---------AAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
A++YGGYAAYRYAQP AAAAAAYSD YGRVY ADPY H + PAA+Y +G +
Sbjct: 380 ADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY-TADPY-HALAPAASYGVGAV 437
>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
Length = 376
Score = 390 bits (1003), Expect = e-109
Identities = 218/356 (61%), Positives = 238/356 (66%), Gaps = 58/356 (16%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
M QP+ +PPPPQNGIP EY P TQDY+GQT EH +TLY Q H EQ +
Sbjct: 21 MVQPFTTIPFPPPPQNGIPTEYGVPH---TQDYAGQTG---EHNLTLYGSTQAHGEQSSN 74
Query: 61 EASTQPIAGTQTVPQTDEAAQTD---SQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQ 117
STQ G+ T T+ AQTD SQ + K PKRLHVSNIPFRFRDPDLRQ
Sbjct: 75 SPSTQN--GSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQ 129
Query: 118 MFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
MFGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARV
Sbjct: 130 MFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 189
Query: 178 MTNKKTGNPYTNGWKLNPVVGAVYGPEFYA------------------------------ 207
MTNKK PY NGWKL+PVVGAVYGPE YA
Sbjct: 190 MTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPL 249
Query: 208 -VTGFPYPTTG-TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIY 265
+ GFPYPT TA A+RGAHLRGRGR VY RA PP IP Y VVYQDGFYGA++Y
Sbjct: 250 IIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYGADLY 308
Query: 266 GGYAAYRYAQP---------AAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
GGYAAYRYAQP AAAAAAYSD YGRVY ADPY H + PAA+Y +G +
Sbjct: 309 GGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY-TADPY-HALAPAASYGVGAV 362
>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
Length = 450
Score = 389 bits (1000), Expect = e-108
Identities = 219/360 (60%), Positives = 238/360 (66%), Gaps = 62/360 (17%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
M QP+ +PPPPQNGIP EY P TQDY+GQT EH +TLY Q H EQ +
Sbjct: 91 MVQPFTTIPFPPPPQNGIPTEYGVPH---TQDYAGQTG---EHNLTLYGSTQAHGEQSSN 144
Query: 61 EASTQPIAGTQTVPQTDEAAQTD---SQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQ 117
STQ G+ T T+ AQTD SQ + K PKRLHVSNIPFRFRDPDLRQ
Sbjct: 145 SPSTQN--GSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQ 199
Query: 118 MFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
MFGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARV
Sbjct: 200 MFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 259
Query: 178 MTNKKTGNPYTNGWKLNPVVGAVYGPEFYA------------------------------ 207
MTNKK PY NGWKL+PVVGAVYGPE YA
Sbjct: 260 MTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPL 319
Query: 208 -----VTGFPYPTTG-TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYG 261
V GFPYPT TA A+RGAHLRGRGR VY RA PP IP Y VVYQDGFYG
Sbjct: 320 ISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYG 378
Query: 262 AEIYGGYAAYRYAQP---------AAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
A++YGGYAAYRYAQP AAAAAAYSD YGRVY ADPY H + PAA+Y +G +
Sbjct: 379 ADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY-TADPY-HALAPAASYGVGAV 436
>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
Length = 380
Score = 389 bits (1000), Expect = e-108
Identities = 219/360 (60%), Positives = 238/360 (66%), Gaps = 62/360 (17%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
M QP+ +PPPPQNGIP EY P TQDY+GQT EH +TLY Q H EQ +
Sbjct: 21 MVQPFTTIPFPPPPQNGIPTEYGVPH---TQDYAGQTG---EHNLTLYGSTQAHGEQSSN 74
Query: 61 EASTQPIAGTQTVPQTDEAAQTD---SQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQ 117
STQ G+ T T+ AQTD SQ + K PKRLHVSNIPFRFRDPDLRQ
Sbjct: 75 SPSTQN--GSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQ 129
Query: 118 MFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
MFGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARV
Sbjct: 130 MFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 189
Query: 178 MTNKKTGNPYTNGWKLNPVVGAVYGPEFYA------------------------------ 207
MTNKK PY NGWKL+PVVGAVYGPE YA
Sbjct: 190 MTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPL 249
Query: 208 -----VTGFPYPTTG-TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYG 261
V GFPYPT TA A+RGAHLRGRGR VY RA PP IP Y VVYQDGFYG
Sbjct: 250 ISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYG 308
Query: 262 AEIYGGYAAYRYAQP---------AAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
A++YGGYAAYRYAQP AAAAAAYSD YGRVY ADPY H + PAA+Y +G +
Sbjct: 309 ADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY-TADPY-HALAPAASYGVGAV 366
>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
Length = 367
Score = 310 bits (795), Expect = 8e-85
Identities = 173/291 (59%), Positives = 188/291 (64%), Gaps = 46/291 (15%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
M QP+ +PPPPQNGIP EY P TQDY+GQT EH +TLY Q H EQ +
Sbjct: 21 MVQPFTTIPFPPPPQNGIPTEYGVPH---TQDYAGQTG---EHNLTLYGSTQAHGEQSSN 74
Query: 61 EASTQPIAGTQTVPQTDEAAQTD---SQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQ 117
STQ ++ QT+ AQTD SQ + K PKRLHVSNIPFRFRDPDLRQ
Sbjct: 75 SPSTQ----NGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQ 130
Query: 118 MFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
MFGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARV
Sbjct: 131 MFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 190
Query: 178 MTNKKTGNPYTNGWKLNPVVGAVYGPEFYA------------------------------ 207
MTNKK PY NGWKL+PVVGAVYGPE YA
Sbjct: 191 MTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPL 250
Query: 208 -VTGFPYPTTG-TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQ 256
+ GFPYPT TA A+RGAHLRGRGR VY RA PP IP Y V Q
Sbjct: 251 IIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVDMQ 300
>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
Length = 370
Score = 306 bits (784), Expect = 2e-83
Identities = 175/295 (59%), Positives = 188/295 (63%), Gaps = 51/295 (17%)
Query: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
M QP+ +PPPPQNGIP EY P TQDY+GQT EH +TLY Q H EQ +
Sbjct: 21 MVQPFTTIPFPPPPQNGIPTEYGVPH---TQDYAGQTG---EHNLTLYGSTQAHGEQSSN 74
Query: 61 EASTQPIAGTQTVPQTDEAAQTD---SQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQ 117
STQ G+ T T+ AQTD SQ + K PKRLHVSNIPFRFRDPDLRQ
Sbjct: 75 SPSTQN--GSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQ 129
Query: 118 MFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
MFGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARV
Sbjct: 130 MFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 189
Query: 178 MTNKKTGNPYTNGWKLNPVVGAVYGPEFYA------------------------------ 207
MTNKK PY NGWKL+PVVGAVYGPE YA
Sbjct: 190 MTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPL 249
Query: 208 -----VTGFPYPTTG-TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQ 256
V GFPYPT TA A+RGAHLRGRGR VY RA PP IP Y V Q
Sbjct: 250 ISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVDMQ 303
>gi|37574731 boule isoform 1 [Homo sapiens]
Length = 295
Score = 76.6 bits (187), Expect = 3e-14
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 50/241 (20%)
Query: 70 TQTVPQTDEAAQTDS--------QPLHPSDPTEKQQ-----PKRLHVSNIPFRFRDPDLR 116
T++ PQT QTDS P+ ++PT + P R+ V I F+ + DLR
Sbjct: 3 TESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLR 62
Query: 117 QMFGQFGKILDVEIIFNERG-SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA 175
+ F Q+G + +V+I+ + G SKG+GFVTFET DA + ++ + +K+ + A
Sbjct: 63 KFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA-- 120
Query: 176 RVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVY 235
+ ++ G P ++ + P G +Y TG+PY T VAY +
Sbjct: 121 --IRKQQVGIPRSS---IMPAAGTMY---LTTSTGYPY-TYHNGVAY------------F 159
Query: 236 NTFRAAPPPPPIPTYGAV---------VYQDGFY----GAEIYGGYAAYRYAQPAAAAAA 282
+T PPP P+ +YQ Y + G + QP+A++A
Sbjct: 160 HTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAP 219
Query: 283 Y 283
+
Sbjct: 220 F 220
>gi|14719414 boule isoform 2 [Homo sapiens]
Length = 283
Score = 69.7 bits (169), Expect = 3e-12
Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 44/230 (19%)
Query: 75 QTDEAAQTDS--QPLHPSDPTEKQQ-----PKRLHVSNIPFRFRDPDLRQMFGQFGKILD 127
QTD + + + P+ ++PT + P R+ V I F+ + DLR+ F Q+G + +
Sbjct: 2 QTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKE 61
Query: 128 VEIIFNERG-SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNP 186
V+I+ + G SKG+GFVTFET DA + ++ + +K+ + A + ++ G P
Sbjct: 62 VKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA----IRKQQVGIP 117
Query: 187 YTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPP 246
++ + P G +Y TG+PY T VAY ++T PPP
Sbjct: 118 RSS---IMPAAGTMY---LTTSTGYPY-TYHNGVAY------------FHTPEVTSVPPP 158
Query: 247 IPTYGAV---------VYQDGFY----GAEIYGGYAAYRYAQPAAAAAAY 283
P+ +YQ Y + G + QP+A++A +
Sbjct: 159 WPSRSVCSSPVMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAPF 208
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 67.8 bits (164), Expect = 1e-11
Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 44/222 (19%)
Query: 49 TPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPF 108
TP PE+ T+P G Q P++D + + ++ V IP
Sbjct: 86 TPRGMQPER------TRPKEGWQKGPRSDNS-----------------KSNKIFVGGIPH 122
Query: 109 RFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFETSSDADRAREKLNGTIVEGR 166
+ +LR+ F +FG + +V +I++ ++ +GFGF+TFE D+A ++ + G+
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGK 181
Query: 167 KIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYG---------PEFYAVTGFPYPTTG 217
K+EV A R ++ G P + W V A G + Y G P G
Sbjct: 182 KVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVP-AG 240
Query: 218 TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGF 259
A+ G GRG A PPPPP +Y GF
Sbjct: 241 QAIGGYGPPPAGRG--------APPPPPPFTSYIVSTPPGGF 274
Score = 31.6 bits (70), Expect = 0.95
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 6 PPAQYPPP---PQN-GIPAE----YAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQ 57
PP +PPP PQ G P + Y PPPP P Q P P P
Sbjct: 270 PPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPP--------------PAT 315
Query: 58 PGSEASTQPIAGTQTVPQTDEAAQTDSQPLHP 89
PG+ P +Q P D + +QP P
Sbjct: 316 PGAAPLAFPPPPSQAAP--DMSKPPTAQPDFP 345
Score = 29.6 bits (65), Expect = 3.6
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 7 PAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPA 51
P +PPPP P PP P Y ++G+ Y+PA
Sbjct: 320 PLAFPPPPSQAAPDMSKPPTAQPDFPYG-------QYGLGSYSPA 357
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 67.8 bits (164), Expect = 1e-11
Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 44/222 (19%)
Query: 49 TPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPF 108
TP PE+ T+P G Q P++D + + ++ V IP
Sbjct: 86 TPRGMQPER------TRPKEGWQKGPRSDNS-----------------KSNKIFVGGIPH 122
Query: 109 RFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFETSSDADRAREKLNGTIVEGR 166
+ +LR+ F +FG + +V +I++ ++ +GFGF+TFE D+A ++ + G+
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGK 181
Query: 167 KIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYG---------PEFYAVTGFPYPTTG 217
K+EV A R ++ G P + W V A G + Y G P G
Sbjct: 182 KVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVP-AG 240
Query: 218 TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGF 259
A+ G GRG A PPPPP +Y GF
Sbjct: 241 QAIGGYGPPPAGRG--------APPPPPPFTSYIVSTPPGGF 274
Score = 31.6 bits (70), Expect = 0.95
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 6 PPAQYPPP---PQN-GIPAE----YAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQ 57
PP +PPP PQ G P + Y PPPP P Q P P P
Sbjct: 270 PPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPP--------------PAT 315
Query: 58 PGSEASTQPIAGTQTVPQTDEAAQTDSQPLHP 89
PG+ P +Q P D + +QP P
Sbjct: 316 PGAAPLAFPPPPSQAAP--DMSKPPTAQPDFP 345
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 7 PAQYPPPPQNGIPAEYAPP---PPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQ--PGSE 61
P +PPPP P PP P P Y+G + G P+Q P P
Sbjct: 320 PLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFGQGFSDPSQQPPSYGGPSVP 379
Query: 62 ASTQPIAG 69
S P AG
Sbjct: 380 GSGGPPAG 387
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 60.8 bits (146), Expect = 1e-09
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 65 QPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGK 124
Q + G + Q +A + + + + P RL+V ++ F + LR +F FG+
Sbjct: 216 QRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGR 275
Query: 125 ILDVEIIFN-ERG-SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATAR 176
I ++++ + E G SKG+GF+TF S A +A E+LNG + GR ++V + T R
Sbjct: 276 IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 60.8 bits (146), Expect = 1e-09
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 65 QPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGK 124
Q + G + Q +A + + + + P RL+V ++ F + LR +F FG+
Sbjct: 216 QRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGR 275
Query: 125 ILDVEIIFN-ERG-SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATAR 176
I ++++ + E G SKG+GF+TF S A +A E+LNG + GR ++V + T R
Sbjct: 276 IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 60.8 bits (146), Expect = 1e-09
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 91 DPT-EKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSS 149
DP+ K + + N+ + L F FG IL +++ +E GSKG+GFV FET
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 150 DADRAREKLNGTIVEGRKIEVNNATAR 176
A+RA EK+NG ++ RK+ V +R
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 60.1 bits (144), Expect = 2e-09
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFETSSDADRAREKLN 159
+++ N D L+ +FG+FG L V+++ +E G SKGFGFV+FE DA +A +++N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 160 GTIVEGRKIEVNNATARV 177
G + G++I V A +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270
Score = 49.7 bits (117), Expect = 3e-06
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 91 DPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSD 150
D + Q L+V N+ D LR+ F FG I +++ SKGFGFV F + +
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE 345
Query: 151 ADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPY 187
A +A ++NG IV + + V A + N Y
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 36.6 bits (83), Expect = 0.029
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 87 LHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVT 144
++PS P+ L+V ++ + L + F G IL + + + R S G+ +V
Sbjct: 1 MNPSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVN 58
Query: 145 FETSSDADRAREKLNGTIVEGRKIEV 170
F+ +DA+RA + +N +++G+ + +
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRI 84
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 60.5 bits (145), Expect = 2e-09
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFETSSDADRAREKLN 159
+++ N D L+++F QFGK L V+++ + G SKGFGFV++E DA++A E++N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 160 GTIVEGRKIEVNNATARV 177
G + G+ I V A +V
Sbjct: 253 GKEISGKIIFVGRAQKKV 270
Score = 58.5 bits (140), Expect = 7e-09
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 91 DPT-EKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSS 149
DP+ K + + N+ + L F FG IL +++ +E GSKG+ FV FET
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 150 DADRAREKLNGTIVEGRKIEVNNATAR 176
AD+A EK+NG ++ RK+ V +R
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 51.6 bits (122), Expect = 9e-07
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 95 KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRA 154
+ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +A
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 155 REKLNGTIVEGRKIEVNNATARVMTNKKTGNPY 187
++NG IV + + V A + N Y
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 36.6 bits (83), Expect = 0.029
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFETSSDADRAREKL 158
L+V ++ + L + F G +L + + + R S G+ +V F+ +DA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 159 NGTIVEGRKIEV 170
N +++G+ I +
Sbjct: 73 NFDVIKGKPIRI 84
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 60.5 bits (145), Expect = 2e-09
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFETSSDADRAREKLN 159
+++ N D L+++F QFGK L V+++ + G SKGFGFV++E DA++A E++N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 160 GTIVEGRKIEVNNATARV 177
G + G+ I V A +V
Sbjct: 253 GKEISGKIIFVGRAQKKV 270
Score = 58.5 bits (140), Expect = 7e-09
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 91 DPT-EKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSS 149
DP+ K + + N+ + L F FG IL +++ +E GSKG+ FV FET
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 150 DADRAREKLNGTIVEGRKIEVNNATAR 176
AD+A EK+NG ++ RK+ V +R
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 51.6 bits (122), Expect = 9e-07
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 95 KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRA 154
+ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +A
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 155 REKLNGTIVEGRKIEVNNATARVMTNKKTGNPY 187
++NG IV + + V A + N Y
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 36.6 bits (83), Expect = 0.029
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFETSSDADRAREKL 158
L+V ++ + L + F G +L + + + R S G+ +V F+ +DA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 159 NGTIVEGRKIEV 170
N +++G+ I +
Sbjct: 73 NFDVIKGKPIRI 84
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 60.5 bits (145), Expect = 2e-09
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFETSSDADRAREKLN 159
+++ N D L+++F QFGK L V+++ + G SKGFGFV++E DA++A E++N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 160 GTIVEGRKIEVNNATARV 177
G + G+ I V A +V
Sbjct: 253 GKEISGKIIFVGRAQKKV 270
Score = 58.5 bits (140), Expect = 7e-09
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 91 DPT-EKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSS 149
DP+ K + + N+ + L F FG IL +++ +E GSKG+ FV FET
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 150 DADRAREKLNGTIVEGRKIEVNNATAR 176
AD+A EK+NG ++ RK+ V +R
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 51.6 bits (122), Expect = 9e-07
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 95 KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRA 154
+ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +A
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKA 349
Query: 155 REKLNGTIVEGRKIEVNNATARVMTNKKTGNPY 187
++NG IV + + V A + N Y
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 36.6 bits (83), Expect = 0.029
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFETSSDADRAREKL 158
L+V ++ + L + F G +L + + + R S G+ +V F+ +DA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 159 NGTIVEGRKIEV 170
N +++G+ I +
Sbjct: 73 NFDVIKGKPIRI 84
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 60.1 bits (144), Expect = 2e-09
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFETSSDADRAREKLN 159
+++ N D L+ +FG+FG L V+++ +E G SKGFGFV+FE DA +A +++N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 160 GTIVEGRKIEVNNATARV 177
G + G++I V A +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270
Score = 59.7 bits (143), Expect = 3e-09
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 91 DPT-EKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSS 149
DP+ K + V N+ + L FG IL ++ +E GSKG+GFV FET
Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHE 149
Query: 150 DADRAREKLNGTIVEGRKIEVNNATAR 176
A+RA +K+NG ++ GRK+ V +R
Sbjct: 150 AAERAIKKMNGMLLNGRKVFVGQFKSR 176
Score = 49.7 bits (117), Expect = 3e-06
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 91 DPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSD 150
D + Q L+V N+ D LR+ F FG I +++ SKGFGFV F + +
Sbjct: 286 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE 345
Query: 151 ADRAREKLNGTIVEGRKIEV 170
A +A ++NG IV + + V
Sbjct: 346 ATKAVTEMNGRIVATKPLYV 365
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 58.2 bits (139), Expect = 9e-09
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Query: 91 DPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSD 150
D + Q L+V N+ D LR+ F +G I +++ SKGFGFV F + +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEE 345
Query: 151 ADRAREKLNGTIVEGRKIEVNNATAR-----VMTNKKTGNPYTNGWKLNPVVGAVYGPEF 205
A +A ++NG IV + + V A + ++TN+ T NP++G+ P
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSS 405
Query: 206 YAVTGFPYPTTGTA 219
Y + P P A
Sbjct: 406 YFLPAMPQPPAQAA 419
Score = 55.1 bits (131), Expect = 8e-08
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFETSSDADRAREKLN 159
++V N+P + L+ +F QFGK+L V+++ + G S+ FGFV FE +A +A +N
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 160 GTIVEGRKIEVNNATARV 177
G V GR + A RV
Sbjct: 253 GKEVSGRLLYAGRAQKRV 270
Score = 52.4 bits (124), Expect = 5e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNG 160
+ + N+ + L F FG IL ++ +E GS+GFGFV FET A +A +NG
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 161 TIVEGRKIEVNNATAR 176
++ RK+ V + +R
Sbjct: 161 MLLNDRKVFVGHFKSR 176
Score = 33.9 bits (76), Expect = 0.19
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFETSSDADRAREKL 158
L+V ++ + L + F G IL + + + R S G+ ++ F+ +DA+RA + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 159 NGTIVEGRKIEV 170
N +++G+ I +
Sbjct: 73 NFEMLKGQPIRI 84
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 57.8 bits (138), Expect = 1e-08
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 114 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVN 171
DLR++F ++G I DV I++++ R S+GF FV FE DA A+E+ NG ++GR+I V+
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 65 QPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGK 124
Q + G + Q +A + + + P RL+V ++ F + LR +F FGK
Sbjct: 195 QRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGK 254
Query: 125 ILDVEIIFNERG--SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
I ++ ++ + SKG+GF+TF S A RA E+LNG + GR + V + T R+
Sbjct: 255 IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 309
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 65 QPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGK 124
Q + G + Q +A + + + P RL+V ++ F + LR +F FGK
Sbjct: 229 QRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGK 288
Query: 125 ILDVEIIFNERG--SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
I ++ ++ + SKG+GF+TF S A RA E+LNG + GR + V + T R+
Sbjct: 289 IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 343
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 65 QPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGK 124
Q + G + Q +A + + + P RL+V ++ F + LR +F FGK
Sbjct: 213 QRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGK 272
Query: 125 ILDVEIIFNERG--SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
I ++ ++ + SKG+GF+TF S A RA E+LNG + GR + V + T R+
Sbjct: 273 IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 327
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 56.6 bits (135), Expect = 3e-08
Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 55/231 (23%)
Query: 6 PPAQYPP-PPQNGIPAEYAPP----PPHPTQDYSGQTPVPTEH----------------- 43
PP PP PP +G+P PP PP P G P P +
Sbjct: 161 PPGAPPPTPPSSGVPT--TPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKP 218
Query: 44 --GMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQ----- 96
G L TP HP+ P +P G Q P + P P +E++
Sbjct: 219 GGGPGLSTPGG-HPKPP-HRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSE 276
Query: 97 ------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 138
Q RL V N+P + + +++F ++G+ E+ N+ K
Sbjct: 277 GFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGE--PGEVFINK--GK 332
Query: 139 GFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTN 189
GFGF+ E+ + A+ A+ +L+ T + GR++ V AT + + +PY +
Sbjct: 333 GFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVS 383
Score = 34.7 bits (78), Expect = 0.11
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 3 QPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEA 62
Q PP Q PPP Q P + PPPHP Q + Q P P + AQ PG
Sbjct: 69 QQQPPPQQPPPQQ---PPPH-QPPPHP-QPHQQQQPPPPPQDSSKPVVAQGPGPAPG--V 121
Query: 63 STQPIAGTQTVPQT 76
+ P A + P T
Sbjct: 122 GSAPPASSSAPPAT 135
Score = 31.6 bits (70), Expect = 0.95
Identities = 24/95 (25%), Positives = 31/95 (32%), Gaps = 7/95 (7%)
Query: 11 PPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQ-----PGSEASTQ 65
P P Q+G PPPPH Q P + P P Q P + S++
Sbjct: 49 PGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSK 108
Query: 66 PIA--GTQTVPQTDEAAQTDSQPLHPSDPTEKQQP 98
P+ G P A S + PT P
Sbjct: 109 PVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPP 143
Score = 31.2 bits (69), Expect = 1.2
Identities = 30/118 (25%), Positives = 36/118 (30%), Gaps = 29/118 (24%)
Query: 3 QPYPPAQYPPPPQNGI------------------PAEYAPPPPHPTQDY----SGQTPVP 40
QP+ Q PPPPQ+ PA + PP P SG P P
Sbjct: 92 QPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTP 151
Query: 41 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQP 98
T P PG+ T P +G T P + P KQ P
Sbjct: 152 TP-------PPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGP 202
Score = 30.0 bits (66), Expect = 2.8
Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 4 PYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPV-PTEHGMTLYTPAQTHPEQPGSEA 62
P PP PPPP + + P P P Q Q P P H P +P
Sbjct: 56 PKPPI--PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQ 113
Query: 63 STQPIAGTQTVPQTDEAAQTDSQPLHPSDP 92
P G + P +A + P + P
Sbjct: 114 GPGPAPGVGSAPPASSSAPPATPPTSGAPP 143
Score = 28.9 bits (63), Expect = 6.1
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFETSSDADRAREK 157
L V N+ + L + F QFG I +I ++RG S G G V F + A +A E+
Sbjct: 373 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430
Score = 28.5 bits (62), Expect = 8.0
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 3 QPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEA 62
Q PP Q PP PQ + PPP ++ Q P P + + + P +
Sbjct: 80 QQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTS 139
Query: 63 STQPIAGTQTVPQTDEAAQTDSQPLHP 89
P +G P T A T + P P
Sbjct: 140 GAPPGSGPGPTP-TPPPAVTSAPPGAP 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,420,743
Number of Sequences: 37866
Number of extensions: 1014147
Number of successful extensions: 10567
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 588
Number of HSP's that attempted gapping in prelim test: 5900
Number of HSP's gapped (non-prelim): 3701
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.