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Search of human proteins with 4505175
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505175 KIT ligand isoform b precursor [Homo sapiens]
(273 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505175 KIT ligand isoform b precursor [Homo sapiens] 542 e-154
gi|4580420 KIT ligand isoform a precursor [Homo sapiens] 473 e-133
gi|142976783 PDZ domain containing RING finger 4 [Homo sapiens] 32 0.78
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 32 0.78
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 32 0.78
gi|61742786 leucine rich repeat and death domain containing prot... 31 1.3
gi|61742784 leucine rich repeat and death domain containing prot... 31 1.3
gi|61742782 leucine rich repeat and death domain containing prot... 31 1.3
gi|4504673 interleukin 6 receptor isoform 1 precursor [Homo sapi... 30 1.7
gi|105990532 apolipoprotein B precursor [Homo sapiens] 29 5.0
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 29 5.0
gi|219842266 usherin isoform B [Homo sapiens] 28 6.6
gi|219842259 usherin isoform A [Homo sapiens] 28 6.6
gi|68348709 formin binding protein 1-like isoform 1 [Homo sapiens] 28 6.6
gi|41581463 formin binding protein 1-like isoform 2 [Homo sapiens] 28 6.6
gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing... 28 8.6
gi|169163718 PREDICTED: hypothetical protein [Homo sapiens] 28 8.6
gi|113415024 PREDICTED: similar to destrin [Homo sapiens] 28 8.6
gi|169163704 PREDICTED: hypothetical protein [Homo sapiens] 28 8.6
gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing... 28 8.6
gi|112382214 SEC24 (S. cerevisiae) homolog B isoform b [Homo sap... 28 8.6
gi|112382212 SEC24 (S. cerevisiae) homolog B isoform a [Homo sap... 28 8.6
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 28 8.6
>gi|4505175 KIT ligand isoform b precursor [Homo sapiens]
Length = 273
Score = 542 bits (1397), Expect = e-154
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG 60
MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
Sbjct: 1 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG 60
Query: 61 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS 120
MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
Sbjct: 61 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS 120
Query: 121 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT 180
KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT
Sbjct: 121 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT 180
Query: 181 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR 240
KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
Sbjct: 181 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR 240
Query: 241 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV 273
QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
Sbjct: 241 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV 273
>gi|4580420 KIT ligand isoform a precursor [Homo sapiens]
Length = 245
Score = 473 bits (1216), Expect = e-133
Identities = 244/273 (89%), Positives = 244/273 (89%), Gaps = 28/273 (10%)
Query: 1 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG 60
MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
Sbjct: 1 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG 60
Query: 61 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS 120
MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
Sbjct: 61 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS 120
Query: 121 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT 180
KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEK
Sbjct: 121 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKG------ 174
Query: 181 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR 240
KAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
Sbjct: 175 ----------------------KAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR 212
Query: 241 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV 273
QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
Sbjct: 213 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV 245
>gi|142976783 PDZ domain containing RING finger 4 [Homo sapiens]
Length = 778
Score = 31.6 bits (70), Expect = 0.78
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 160 TSDCVVSSTLSPEKDSRVSVTKPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSL 213
T+D SS+ + EKDS V T SLRND SS A P +SL
Sbjct: 280 TTDTATSSSNNHEKDSGVGRTD---------ESLRNDESSEQENAAEDPNSTSL 324
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 31.6 bits (70), Expect = 0.78
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 166 SSTLSPEKDSRVSVTKPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFS 225
SS+ S DS VSV KP A L K + PP SS + + +
Sbjct: 257 SSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKP-KPERPPSSSSSDSDSDEVDRISE 315
Query: 226 LIIGFAFGALYWKKRQPSLTRAVENIQINEEDNEISMLQEKEREFQE 272
WK+R + R +E + E++ E+ L+E+E+E +E
Sbjct: 316 -----------WKRRDEARRRELEARRRREQEEELRRLREQEKEEKE 351
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 31.6 bits (70), Expect = 0.78
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 166 SSTLSPEKDSRVSVTKPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFS 225
SS+ S DS VSV KP A L K + PP SS + + +
Sbjct: 257 SSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKP-KPERPPSSSSSDSDSDEVDRISE 315
Query: 226 LIIGFAFGALYWKKRQPSLTRAVENIQINEEDNEISMLQEKEREFQE 272
WK+R + R +E + E++ E+ L+E+E+E +E
Sbjct: 316 -----------WKRRDEARRRELEARRRREQEEELRRLREQEKEEKE 351
>gi|61742786 leucine rich repeat and death domain containing protein
isoform 3 [Homo sapiens]
Length = 893
Score = 30.8 bits (68), Expect = 1.3
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 14/62 (22%)
Query: 111 LVECVKEN----SSKDLKKSFKSPEP----RLFTPEEFFRIFNRSIDAFKDFVVASETSD 162
L++C+ N + + L + ++ PEP +F EEFF F R ID V ++ D
Sbjct: 631 LLQCLPRNKVDATLRRLLERYRGPEPSDTVEMFEGEEFFAAFERGID------VDADRPD 684
Query: 163 CV 164
CV
Sbjct: 685 CV 686
>gi|61742784 leucine rich repeat and death domain containing protein
isoform 1 [Homo sapiens]
Length = 910
Score = 30.8 bits (68), Expect = 1.3
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 14/62 (22%)
Query: 111 LVECVKEN----SSKDLKKSFKSPEP----RLFTPEEFFRIFNRSIDAFKDFVVASETSD 162
L++C+ N + + L + ++ PEP +F EEFF F R ID V ++ D
Sbjct: 631 LLQCLPRNKVDATLRRLLERYRGPEPSDTVEMFEGEEFFAAFERGID------VDADRPD 684
Query: 163 CV 164
CV
Sbjct: 685 CV 686
>gi|61742782 leucine rich repeat and death domain containing protein
isoform 2 [Homo sapiens]
Length = 753
Score = 30.8 bits (68), Expect = 1.3
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 14/62 (22%)
Query: 111 LVECVKEN----SSKDLKKSFKSPEP----RLFTPEEFFRIFNRSIDAFKDFVVASETSD 162
L++C+ N + + L + ++ PEP +F EEFF F R ID V ++ D
Sbjct: 474 LLQCLPRNKVDATLRRLLERYRGPEPSDTVEMFEGEEFFAAFERGID------VDADRPD 527
Query: 163 CV 164
CV
Sbjct: 528 CV 529
>gi|4504673 interleukin 6 receptor isoform 1 precursor [Homo
sapiens]
Length = 468
Score = 30.4 bits (67), Expect = 1.7
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 169 LSPEKDSRVSVTKPFMLPPVAASSLRNDSSSSNRK--AKNP 207
L PE+ V P + PPV+ SSL +D++SS+ + A++P
Sbjct: 413 LVPERPRPTPVLVPLISPPVSPSSLGSDNTSSHNRPDARDP 453
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 28.9 bits (63), Expect = 5.0
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 32 RVTNNVKDVTKLVANLPKDYMITLK---YVPGMDVLPSHCWISEMVVQLSDSLTDL---- 84
R+ + ++ V V NL D+ + K + + L + + + L D L +L
Sbjct: 2309 RINDVLEHVKHFVINLIGDFEVAEKINAFRAKVHELIERYEVDQQIQVLMDKLVELAHQY 2368
Query: 85 -----LDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSSK 121
+ K SN+ + + +KLV +DD V+ + E S K
Sbjct: 2369 KLKETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFK 2410
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 28.9 bits (63), Expect = 5.0
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 6/155 (3%)
Query: 28 ICRNRVTNNVKDVTKLVANLPKDYMITLKYVPGMDVLPSHCWISEMVVQLSDSLTDLLDK 87
+C+N N ++ + VA++ D + Y+P +V S C S +V Q+ + +L
Sbjct: 1113 VCQNL---NTEEEVENVADIGFDCSMCRPYMPASNVPSSDCCESSLVAQIVTKVKELDPP 1169
Query: 88 FSNISEGLS-NYSIIDKLVNIVDDLVECVKENSSKDLKKSFKSPEPRLFTPEEFFRIFNR 146
+ +G+ S + +L ++ + + LK ++ L TP + +R
Sbjct: 1170 KTYTQDGVCLTESGMTQLQSLTVTVPRRKRSKPKLKLKIINQNSVAVLQTPPDIQSEHSR 1229
Query: 147 SIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVTK 181
D D E DC S SPE+++ TK
Sbjct: 1230 --DGEMDDSREGELMDCDGKSESSPEREAVDDETK 1262
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 28.5 bits (62), Expect = 6.6
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 152 KDFVVASETSDCVVSSTLSPEKDSRVSVTKPFMLPPVAASSLRNDSSSSNRKAKNPPGDS 211
K FV S+ CV S++ + PF PP SSS+ + +PP
Sbjct: 1024 KQFVTGSKCDACVPSASHLDVNNLLGCSKTPFQQPPPRGQV---QSSSAINLSWSPPDSP 1080
Query: 212 SLHWAAMAL 220
+ HW +L
Sbjct: 1081 NAHWLTYSL 1089
>gi|219842259 usherin isoform A [Homo sapiens]
Length = 1546
Score = 28.5 bits (62), Expect = 6.6
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 152 KDFVVASETSDCVVSSTLSPEKDSRVSVTKPFMLPPVAASSLRNDSSSSNRKAKNPPGDS 211
K FV S+ CV S++ + PF PP SSS+ + +PP
Sbjct: 1024 KQFVTGSKCDACVPSASHLDVNNLLGCSKTPFQQPPPRGQV---QSSSAINLSWSPPDSP 1080
Query: 212 SLHWAAMAL 220
+ HW +L
Sbjct: 1081 NAHWLTYSL 1089
>gi|68348709 formin binding protein 1-like isoform 1 [Homo sapiens]
Length = 551
Score = 28.5 bits (62), Expect = 6.6
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 82 TDLLDKFSNISEGLS-NYSIIDKLVNIVDDLVECVKENSSKDL---------KKSFKSPE 131
T+L D+F ++ + +++ V + +E +++N +K L K+S K E
Sbjct: 5 TELWDQFDSLDKHTQWGIDFLERYAKFVKERIE-IEQNYAKQLRNLVKKYCPKRSSKDEE 63
Query: 132 PRLFTPEEFFRIFNRSID-AFKDFVVASE 159
PR + FF I N D A + VVA E
Sbjct: 64 PRFTSCVAFFNILNELNDYAGQREVVAEE 92
>gi|41581463 formin binding protein 1-like isoform 2 [Homo sapiens]
Length = 547
Score = 28.5 bits (62), Expect = 6.6
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 82 TDLLDKFSNISEGLS-NYSIIDKLVNIVDDLVECVKENSSKDL---------KKSFKSPE 131
T+L D+F ++ + +++ V + +E +++N +K L K+S K E
Sbjct: 5 TELWDQFDSLDKHTQWGIDFLERYAKFVKERIE-IEQNYAKQLRNLVKKYCPKRSSKDEE 63
Query: 132 PRLFTPEEFFRIFNRSID-AFKDFVVASE 159
PR + FF I N D A + VVA E
Sbjct: 64 PRFTSCVAFFNILNELNDYAGQREVVAEE 92
>gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 28.1 bits (61), Expect = 8.6
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 19/142 (13%)
Query: 96 SNYSIIDKLVNIVDDLVECVKENSSKDLKKSFK------SPEPRLFTPEEFFRIFNRSID 149
S + D++ +I D ++ K ++S+++KK K S + + EE I I
Sbjct: 96 SGVQVADEVCHIFCD-IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIG 154
Query: 150 A-----FKDFVVASETSDC---VVSSTLSPEKDSRVSVTKPFM----LPPVAASSLRNDS 197
FK FV DC + ++ +K RV F+ LPP+ + +
Sbjct: 155 VSITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSC 214
Query: 198 SSSNRKAKNPPGDSSLHWAAMA 219
+ +K G L+WA +A
Sbjct: 215 KDAIKKKFQANGPEDLNWACIA 236
>gi|169163718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 28.1 bits (61), Expect = 8.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 186 PPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAM-ALPALFSLIIGFAFGALYW 237
PP+A S + + + KA+ P S + A + L +L S + GF F L+W
Sbjct: 89 PPLAISIPYHPPNPAGFKAQPQPSSRSSYPALLQTLRSLSSCVSGFCFSPLHW 141
>gi|113415024 PREDICTED: similar to destrin [Homo sapiens]
Length = 199
Score = 28.1 bits (61), Expect = 8.6
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 19/142 (13%)
Query: 96 SNYSIIDKLVNIVDDLVECVKENSSKDLKKSFK------SPEPRLFTPEEFFRIFNRSID 149
S + D++ +I D ++ K ++S+++KK K S + + EE I I
Sbjct: 43 SGVQVADEVCHIFCD-IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIG 101
Query: 150 A-----FKDFVVASETSDC---VVSSTLSPEKDSRVSVTKPFM----LPPVAASSLRNDS 197
FK FV DC + ++ +K RV F+ LPP+ + +
Sbjct: 102 VSITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSC 161
Query: 198 SSSNRKAKNPPGDSSLHWAAMA 219
+ +K G L+WA +A
Sbjct: 162 KDAIKKKFQANGPEDLNWACIA 183
>gi|169163704 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 28.1 bits (61), Expect = 8.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 186 PPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAM-ALPALFSLIIGFAFGALYW 237
PP+A S + + + KA+ P S + A + L +L S + GF F L+W
Sbjct: 89 PPLAISIPYHPPNPAGFKAQPQPSSRSSYPALLQTLRSLSSCVSGFCFSPLHW 141
>gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 28.1 bits (61), Expect = 8.6
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 19/142 (13%)
Query: 96 SNYSIIDKLVNIVDDLVECVKENSSKDLKKSFK------SPEPRLFTPEEFFRIFNRSID 149
S + D++ +I D ++ K ++S+++KK K S + + EE I I
Sbjct: 96 SGVQVADEVCHIFCD-IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIG 154
Query: 150 A-----FKDFVVASETSDC---VVSSTLSPEKDSRVSVTKPFM----LPPVAASSLRNDS 197
FK FV DC + ++ +K RV F+ LPP+ + +
Sbjct: 155 VTITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSC 214
Query: 198 SSSNRKAKNPPGDSSLHWAAMA 219
+ +K G L+WA +A
Sbjct: 215 KDAIKKKFQANGPEDLNWACIA 236
>gi|112382214 SEC24 (S. cerevisiae) homolog B isoform b [Homo
sapiens]
Length = 1233
Score = 28.1 bits (61), Expect = 8.6
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 168 TLSPEKDSRVS-----VTKPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPA 222
T+ P KD+ S ++ P LPP+ + S S G S+L W++ LP+
Sbjct: 218 TVRPVKDNSFSGQNTAISHPSPLPPLPSQQHHQQQSLS--------GYSTLTWSSPGLPS 269
Query: 223 LFSLIIGFAFGALYWKKRQPSLTRA 247
+I G+L P++T A
Sbjct: 270 TQDNLIRNHTGSLAVANNNPTITVA 294
>gi|112382212 SEC24 (S. cerevisiae) homolog B isoform a [Homo
sapiens]
Length = 1268
Score = 28.1 bits (61), Expect = 8.6
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 168 TLSPEKDSRVS-----VTKPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPA 222
T+ P KD+ S ++ P LPP+ + S S G S+L W++ LP+
Sbjct: 218 TVRPVKDNSFSGQNTAISHPSPLPPLPSQQHHQQQSLS--------GYSTLTWSSPGLPS 269
Query: 223 LFSLIIGFAFGALYWKKRQPSLTRA 247
+I G+L P++T A
Sbjct: 270 TQDNLIRNHTGSLAVANNNPTITVA 294
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 28.1 bits (61), Expect = 8.6
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 160 TSDCVVSSTLSPEKDSRVSVTKPFMLPPVAASSLRNDSSSSNRKAKNPPGDSS 212
TS C V +LS +S+ L V+ SS R + N + PPGD S
Sbjct: 182 TSSCRVCRSLSAVGRRVLSIESFGALQDVSESSWRERPAPGNAGPRRPPGDPS 234
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,217,278
Number of Sequences: 37866
Number of extensions: 423766
Number of successful extensions: 1422
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 23
length of query: 273
length of database: 18,247,518
effective HSP length: 101
effective length of query: 172
effective length of database: 14,423,052
effective search space: 2480764944
effective search space used: 2480764944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.