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Search of human proteins with 4504971
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504971 LIM domain binding 2 isoform a [Homo sapiens]
(373 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504971 LIM domain binding 2 isoform a [Homo sapiens] 774 0.0
gi|195546926 LIM domain binding 2 isoform b [Homo sapiens] 621 e-178
gi|164663816 LIM domain binding 1 isoform 1 [Homo sapiens] 593 e-170
gi|4504969 LIM domain binding 1 isoform 3 [Homo sapiens] 593 e-170
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 38 0.017
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 34 0.19
gi|153792764 hypothetical protein LOC57624 [Homo sapiens] 33 0.41
gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens] 33 0.41
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 33 0.54
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 32 0.71
gi|115511036 alpha-kinase 3 [Homo sapiens] 32 0.92
gi|194097341 period 1 [Homo sapiens] 32 1.2
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 32 1.2
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 31 1.6
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 31 1.6
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 31 1.6
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 31 1.6
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 31 1.6
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 31 2.1
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 31 2.1
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 31 2.1
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 30 2.7
gi|149408119 Ies6-similar protein isoform 1 [Homo sapiens] 30 2.7
gi|120587019 zinc finger protein 318 [Homo sapiens] 30 2.7
gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens] 30 3.5
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 30 3.5
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 30 3.5
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 30 3.5
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 30 3.5
gi|37595553 ring finger protein 111 [Homo sapiens] 30 3.5
>gi|4504971 LIM domain binding 2 isoform a [Homo sapiens]
Length = 373
Score = 774 bits (1999), Expect = 0.0
Identities = 373/373 (100%), Positives = 373/373 (100%)
Query: 1 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE 60
MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
Sbjct: 1 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE 60
Query: 61 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC 120
DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
Sbjct: 61 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC 120
Query: 121 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD 180
DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
Sbjct: 121 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD 180
Query: 181 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ 240
PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
Sbjct: 181 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ 240
Query: 241 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM 300
RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
Sbjct: 241 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM 300
Query: 301 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ 360
VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
Sbjct: 301 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ 360
Query: 361 ETKSENPPPQASQ 373
ETKSENPPPQASQ
Sbjct: 361 ETKSENPPPQASQ 373
>gi|195546926 LIM domain binding 2 isoform b [Homo sapiens]
Length = 331
Score = 621 bits (1601), Expect = e-178
Identities = 301/314 (95%), Positives = 304/314 (96%)
Query: 1 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE 60
MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
Sbjct: 1 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE 60
Query: 61 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC 120
DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
Sbjct: 61 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC 120
Query: 121 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD 180
DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
Sbjct: 121 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD 180
Query: 181 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ 240
PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
Sbjct: 181 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ 240
Query: 241 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM 300
RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP +
Sbjct: 241 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG 300
Query: 301 VVGEPTLMGGEFGD 314
+ +L G GD
Sbjct: 301 AIPNCSLNPGRDGD 314
>gi|164663816 LIM domain binding 1 isoform 1 [Homo sapiens]
Length = 411
Score = 593 bits (1529), Expect = e-170
Identities = 281/358 (78%), Positives = 320/358 (89%), Gaps = 1/358 (0%)
Query: 16 PFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGP 75
P RHTPY Q +YRI+E+NKRLQ+ TE+ DNLWWDAF TEFFEDDA LT++FCLEDGP
Sbjct: 55 PGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGP 114
Query: 76 KRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFT 135
KRYTIGRTLIPRYF ++FEGG T+LYY+LKH KE++H++ +++DCDQ +MVTQHGKPMFT
Sbjct: 115 KRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFT 174
Query: 136 KVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMG 195
+VC EGRL LEF FDD+MRIKTWHF+IRQ+REL+PRSILAMHAQDPQ+LDQLSKNITR G
Sbjct: 175 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCG 234
Query: 196 LTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTT 255
L+N TLNYLRLCVILEPMQELMSRHKTY+LSPRDCLKTCLFQKWQRMVAPPAEPTRQ +
Sbjct: 235 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS 294
Query: 256 KRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDE 315
KRRKRK S ST SS G N N++ SKKK+ A+ +LSSQVPDVMVVGEPTLMGGEFGDE
Sbjct: 295 KRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDE 353
Query: 316 DERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ 373
DERLITRLENTQ+DAANG+DDE+ FNNSPALG NSPWNSKPP++QE+KSENP QASQ
Sbjct: 354 DERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
>gi|4504969 LIM domain binding 1 isoform 3 [Homo sapiens]
Length = 375
Score = 593 bits (1529), Expect = e-170
Identities = 281/358 (78%), Positives = 320/358 (89%), Gaps = 1/358 (0%)
Query: 16 PFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGP 75
P RHTPY Q +YRI+E+NKRLQ+ TE+ DNLWWDAF TEFFEDDA LT++FCLEDGP
Sbjct: 19 PGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGP 78
Query: 76 KRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFT 135
KRYTIGRTLIPRYF ++FEGG T+LYY+LKH KE++H++ +++DCDQ +MVTQHGKPMFT
Sbjct: 79 KRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFT 138
Query: 136 KVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMG 195
+VC EGRL LEF FDD+MRIKTWHF+IRQ+REL+PRSILAMHAQDPQ+LDQLSKNITR G
Sbjct: 139 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCG 198
Query: 196 LTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTT 255
L+N TLNYLRLCVILEPMQELMSRHKTY+LSPRDCLKTCLFQKWQRMVAPPAEPTRQ +
Sbjct: 199 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS 258
Query: 256 KRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDE 315
KRRKRK S ST SS G N N++ SKKK+ A+ +LSSQVPDVMVVGEPTLMGGEFGDE
Sbjct: 259 KRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDE 317
Query: 316 DERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ 373
DERLITRLENTQ+DAANG+DDE+ FNNSPALG NSPWNSKPP++QE+KSENP QASQ
Sbjct: 318 DERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.7 bits (86), Expect = 0.017
Identities = 16/43 (37%), Positives = 34/43 (79%)
Query: 252 QPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSS 294
+PT +RKR++S+SS+S+SS+ ++++S+ S +++++ S SS
Sbjct: 2597 EPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2639
Score = 32.3 bits (72), Expect = 0.71
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 245 PPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSS 294
P A QP +RR +S+SS+S+SS+ ++++S+ S +++++ SS
Sbjct: 2518 PSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Score = 31.2 bits (69), Expect = 1.6
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 251 RQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSS 294
R P KRK +SS+S+SS+ ++++S+ S +++++ S SS
Sbjct: 2594 RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2637
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 34.3 bits (77), Expect = 0.19
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 244 APPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVG 303
APP +P K N +++S+SS+ ++++S S+++ AA + VP VV
Sbjct: 198 APP-----KPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAA--TPKKTVPKKQVVA 250
Query: 304 EPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETK 363
+ + TR ++ D+++ DEE+ P P++S PP +
Sbjct: 251 KAPVKAATTP-------TRKSSSSEDSSS---DEEEEQKKPMKNKPGPYSSVPPPSA--- 297
Query: 364 SENPPPQAS 372
PPP+ S
Sbjct: 298 ---PPPKKS 303
>gi|153792764 hypothetical protein LOC57624 [Homo sapiens]
Length = 653
Score = 33.1 bits (74), Expect = 0.41
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 245 PPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP 297
PP +P R P+TK + SST+ S +G T + K + S ++P
Sbjct: 139 PPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIP 191
>gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens]
Length = 669
Score = 33.1 bits (74), Expect = 0.41
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 245 PPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP 297
PP +P R P+TK + SST+ S +G T + K + S ++P
Sbjct: 139 PPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIP 191
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 32.7 bits (73), Expect = 0.54
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 244 APPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKT 285
AP AE + +RR R +S+SS+S+SS+ ++++S+ S +
Sbjct: 172 APGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 213
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 32.3 bits (72), Expect = 0.71
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 237 QKWQRMVAPPAEPTRQPTTKRRKRKNSTS---STSNSSAGNNANSTGSKKKTTAANLSLS 293
Q QR+ + + PTR P+ + ++S+S S+S+S++ ++++S+ S + A S
Sbjct: 253 QSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDSSSSSSDDSPARSVQS 312
Query: 294 SQVP 297
+ VP
Sbjct: 313 AAVP 316
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 32.0 bits (71), Expect = 0.92
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 244 APPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVG 303
APP + PT R+R + ST AG+ + +TT A +S DV +G
Sbjct: 718 APPQASVQVPTPPARRRHGTRDSTLQGQAGHRTPGEVLECQTTTAPTMSASSSSDVASIG 777
Query: 304 EPT 306
T
Sbjct: 778 VST 780
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 31.6 bits (70), Expect = 1.2
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 10/134 (7%)
Query: 248 EPTRQPTTKRRKRKNSTSSTSNSSAGNNAN-----STGSKKKTTAANLSLSSQVPDVMVV 302
E P+T +RK +S+S T++S++ ++ S G+KK +A LS P V
Sbjct: 639 ESCNLPSTTKRKCASSSSYTTSSASDDDRQRTGPVSVGTKKDPPSAALSGEGATPRKEPV 698
Query: 303 GEPTLMGGEFGDEDERLIT-----RLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP 357
TL ++ E +++ +T + E D L +P + P
Sbjct: 699 VGGTLSPLALANKAESVVSVTSQCSFSSTIVHVGDKKPPESDIIMMEDLPGLAPGPAPSP 758
Query: 358 ATQETKSENPPPQA 371
A T + +P P A
Sbjct: 759 APSPTVAPDPAPDA 772
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 31.6 bits (70), Expect = 1.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 324 ENTQYDAANGMDDEEDFNNSPALGNNSPWNS----KPPATQETKSENPPPQAS 372
EN++ D G + + + SPA + P +S + PA T PPP AS
Sbjct: 280 ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAAS 332
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 31.2 bits (69), Expect = 1.6
Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 4/160 (2%)
Query: 212 PMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSS 271
P +E K P+ LK + PP P P ++ + S ++
Sbjct: 239 PKEEKAPPPKAAFKEPKMALKETKLESTSPKGGPPPPPPPPPRASSKRPATADSPKPSAK 298
Query: 272 AGNNANSTGSKKKT-TAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDA 330
++S GS+ T+ S SS D + + GE + + + +
Sbjct: 299 KQKKSSSKGSRSAPGTSPRTSSSSSFSDKKPAKDKSSTRGEKVKAESEPREAKKALEVEE 358
Query: 331 ANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQ 370
+N +DE F + A +SP NS + + S+ P Q
Sbjct: 359 SNS-EDEASFKSESA--QSSPSNSSSSSDSSSDSDFEPSQ 395
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 31.2 bits (69), Expect = 1.6
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 246 PAEPTRQPTTKRRK---RKNSTSSTSNSSAGNNANSTGSKKKTTAA-------NLSLSSQ 295
P+ P T+K K +T T ++ N ST K+KTT+A S
Sbjct: 128 PSLPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTDGKEKTTSAKETQSIEKTSAKDL 187
Query: 296 VPDVMVVGEPTLMGGEFGDEDERLITRLE---NTQYDAANGMDDEEDFNNSPALGNNSPW 352
P V+ +PT E + L T E T + A+ E +P ++P
Sbjct: 188 APTSKVLAKPT-PKAETTTKGPALTTPKEPTPTTPKEPASTTPKEP----TPTTIKSAPT 242
Query: 353 NSKPPATQETKSENPPPQ 370
K PA TKS P+
Sbjct: 243 TPKEPAPTTTKSAPTTPK 260
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 31.2 bits (69), Expect = 1.6
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 246 PAEPTRQPTTKRRK---RKNSTSSTSNSSAGNNANSTGSKKKTTAA-------NLSLSSQ 295
P+ P T+K K +T T ++ N ST K+KTT+A S
Sbjct: 169 PSLPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTDGKEKTTSAKETQSIEKTSAKDL 228
Query: 296 VPDVMVVGEPTLMGGEFGDEDERLITRLE---NTQYDAANGMDDEEDFNNSPALGNNSPW 352
P V+ +PT E + L T E T + A+ E +P ++P
Sbjct: 229 APTSKVLAKPT-PKAETTTKGPALTTPKEPTPTTPKEPASTTPKEP----TPTTIKSAPT 283
Query: 353 NSKPPATQETKSENPPPQ 370
K PA TKS P+
Sbjct: 284 TPKEPAPTTTKSAPTTPK 301
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 31.2 bits (69), Expect = 1.6
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 246 PAEPTRQPTTKRRK---RKNSTSSTSNSSAGNNANSTGSKKKTTAA-------NLSLSSQ 295
P+ P T+K K +T T ++ N ST K+KTT+A S
Sbjct: 221 PSLPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTDGKEKTTSAKETQSIEKTSAKDL 280
Query: 296 VPDVMVVGEPTLMGGEFGDEDERLITRLE---NTQYDAANGMDDEEDFNNSPALGNNSPW 352
P V+ +PT E + L T E T + A+ E +P ++P
Sbjct: 281 APTSKVLAKPT-PKAETTTKGPALTTPKEPTPTTPKEPASTTPKEP----TPTTIKSAPT 335
Query: 353 NSKPPATQETKSENPPPQ 370
K PA TKS P+
Sbjct: 336 TPKEPAPTTTKSAPTTPK 353
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 31.2 bits (69), Expect = 1.6
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 246 PAEPTRQPTTKRRK---RKNSTSSTSNSSAGNNANSTGSKKKTTAA-------NLSLSSQ 295
P+ P T+K K +T T ++ N ST K+KTT+A S
Sbjct: 262 PSLPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTDGKEKTTSAKETQSIEKTSAKDL 321
Query: 296 VPDVMVVGEPTLMGGEFGDEDERLITRLE---NTQYDAANGMDDEEDFNNSPALGNNSPW 352
P V+ +PT E + L T E T + A+ E +P ++P
Sbjct: 322 APTSKVLAKPT-PKAETTTKGPALTTPKEPTPTTPKEPASTTPKEP----TPTTIKSAPT 376
Query: 353 NSKPPATQETKSENPPPQ 370
K PA TKS P+
Sbjct: 377 TPKEPAPTTTKSAPTTPK 394
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 30.8 bits (68), Expect = 2.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 202 NYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKR 257
+Y +C + M + + ++S +D L+ C Q W V P EP+ QP R
Sbjct: 3945 SYSAICSTAQRMYQSLEHELQKHVSRQDTLQQC--QAWLSAVQPDLEPSPQPPLSR 3998
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 30.8 bits (68), Expect = 2.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 202 NYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKR 257
+Y +C + M + + ++S +D L+ C Q W V P EP+ QP R
Sbjct: 4016 SYSAICSTAQRMYQSLEHELQKHVSRQDTLQQC--QAWLSAVQPDLEPSPQPPLSR 4069
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 30.8 bits (68), Expect = 2.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 253 PTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVV 302
P T S++S ++SS+G N +S+G + T +S+ S +PD V
Sbjct: 8 PHTSSSACATSSTSGASSSSGCNNSSSGGSGRPTGPQISVYSGIPDRQTV 57
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 30.4 bits (67), Expect = 2.7
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 343 SPALGNNSPWNSKPPATQETKSENPPPQ 370
SP LG ++P KPPAT S PPQ
Sbjct: 61 SPPLGTHNPGGLKPPATGGLSSLGSPPQ 88
>gi|149408119 Ies6-similar protein isoform 1 [Homo sapiens]
Length = 228
Score = 30.4 bits (67), Expect = 2.7
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 245 PPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGE 304
P T P R +K S + N S+G ++ KKK +A++ + + P M+V
Sbjct: 6 PIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGAS-KKKKASASSFAQTCLSPSTMIVRP 64
Query: 305 PTLMG 309
P G
Sbjct: 65 PQPRG 69
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 30.4 bits (67), Expect = 2.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 235 LFQKWQRMVAPPAEPTRQP-TTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293
+F K Q+ ++ EPT +P ++ K SS SNSS+ + K +T + + S
Sbjct: 984 IFDKSQKSLSDSREPTEKPGKAEKSKSPEKVSSFSNSSSNKESKVNNEKFRTKSPKPAES 1043
Query: 294 SQ 295
Q
Sbjct: 1044 PQ 1045
>gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens]
Length = 506
Score = 30.0 bits (66), Expect = 3.5
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 262 NSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLIT 321
+S+SSTS SS+G+ ++S+ S ++ + L +VP+ +G F D RL
Sbjct: 46 SSSSSTSGSSSGSGSSSSSSGSTSSRSRLYRKKRVPEPSRRARRAPLGTNFVD---RLPQ 102
Query: 322 RLENTQYDAANGMDDEED 339
+ N + A + DE D
Sbjct: 103 AVRN-RVQALRNIQDECD 119
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 30.0 bits (66), Expect = 3.5
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 239 WQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKT----TAANLSLSS 294
W +++ ++ P K++ SS+ N++ N+A++ GS+K T T +N S
Sbjct: 187 WDKVIVDGSDMEEWPCIAS---KDTESSSENTTDNNSASNPGSEKSTLPGSTTSNKGKGS 243
Query: 295 QVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNS 354
Q E L G + + + + N+ + NG+ + + + +G S +++
Sbjct: 244 QCQSASSGNECNL--GVWKSDPKAKSVQSSNSTTENNNGLGNWRNVSGQDRIGPGSGFSN 301
Query: 355 KPP 357
P
Sbjct: 302 FNP 304
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 30.0 bits (66), Expect = 3.5
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 239 WQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKT----TAANLSLSS 294
W +++ ++ P K++ SS+ N++ N+A++ GS+K T T +N S
Sbjct: 187 WDKVIVDGSDMEEWPCIAS---KDTESSSENTTDNNSASNPGSEKSTLPGSTTSNKGKGS 243
Query: 295 QVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNS 354
Q E L G + + + + N+ + NG+ + + + +G S +++
Sbjct: 244 QCQSASSGNECNL--GVWKSDPKAKSVQSSNSTTENNNGLGNWRNVSGQDRIGPGSGFSN 301
Query: 355 KPP 357
P
Sbjct: 302 FNP 304
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 30.0 bits (66), Expect = 3.5
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 254 TTKRRKRKNSTSSTSNSSAGNNANSTG------SKKKTTAANLSLSSQVPDVMVVGEPTL 307
T+ +RK+ + TSS+S+ ++ NS G K K NL LSS G+ L
Sbjct: 1153 TSTKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGFCQSSGDEAL 1212
Query: 308 M---------GGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALG--NNSPWNSKP 356
+ D + R+ ++ + A D++ ++ P G N +
Sbjct: 1213 SKSVPVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQNEEN 1272
Query: 357 PATQETKSE 365
P +E K++
Sbjct: 1273 PGDEEAKNQ 1281
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 30.0 bits (66), Expect = 3.5
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 254 TTKRRKRKNSTSSTSNSSAGNNANSTG------SKKKTTAANLSLSSQVPDVMVVGEPTL 307
T+ +RK+ + TSS+S+ ++ NS G K K NL LSS G+ L
Sbjct: 1191 TSTKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGFCQSSGDEAL 1250
Query: 308 M---------GGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALG--NNSPWNSKP 356
+ D + R+ ++ + A D++ ++ P G N +
Sbjct: 1251 SKSVPVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQNEEN 1310
Query: 357 PATQETKSE 365
P +E K++
Sbjct: 1311 PGDEEAKNQ 1319
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 30.0 bits (66), Expect = 3.5
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 248 EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTL 307
EPT PTT R +TS++ NN+N + S++ + A+ SSQ P + TL
Sbjct: 391 EPTVVPTTSARMESQATSASI-----NNSNPSTSEQASDTASAVTSSQ-PSTVSETSATL 444
Query: 308 -----MGGEFGDEDER 318
G GD+ R
Sbjct: 445 TSNSTTGTSIGDDSRR 460
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,768,367
Number of Sequences: 37866
Number of extensions: 707209
Number of successful extensions: 3162
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 3087
Number of HSP's gapped (non-prelim): 102
length of query: 373
length of database: 18,247,518
effective HSP length: 104
effective length of query: 269
effective length of database: 14,309,454
effective search space: 3849243126
effective search space used: 3849243126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.