Search of human proteins with 4502775

Search of human proteins with 4502775

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502775 centromere protein A isoform a [Homo sapiens]
         (140 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502775 centromere protein A isoform a [Homo sapiens]              283   2e-77
gi|109637779 centromere protein A isoform b [Homo sapiens]            217   2e-57
gi|53793688 histone cluster 2, H3a [Homo sapiens]                     110   3e-25
gi|31742503 histone cluster 2, H3c [Homo sapiens]                     110   3e-25
gi|183076548 histone cluster 2, H3d [Homo sapiens]                    110   3e-25
gi|4504287 histone cluster 1, H3e [Homo sapiens]                      110   4e-25
gi|4504295 histone cluster 1, H3h [Homo sapiens]                      110   4e-25
gi|4504289 histone cluster 1, H3i [Homo sapiens]                      110   4e-25
gi|4504281 histone cluster 1, H3a [Homo sapiens]                      110   4e-25
gi|10440560 histone cluster 1, H3f [Homo sapiens]                     110   4e-25
gi|21071021 histone cluster 1, H3d [Homo sapiens]                     110   4e-25
gi|4504297 histone cluster 1, H3b [Homo sapiens]                      110   4e-25
gi|4504293 histone cluster 1, H3j [Homo sapiens]                      110   4e-25
gi|4504285 histone cluster 1, H3c [Homo sapiens]                      110   4e-25
gi|4504291 H3 histone family, member H [Homo sapiens]                 110   4e-25
gi|4885385 H3 histone, family 3B [Homo sapiens]                       109   6e-25
gi|4504279 H3 histone, family 3A [Homo sapiens]                       109   6e-25
gi|4504299 histone cluster 3, H3 [Homo sapiens]                       107   2e-24
gi|169167761 PREDICTED: similar to HIStone family member (his-72...   104   3e-23
gi|88987392 PREDICTED: similar to HIStone family member (his-72)...   104   3e-23
gi|41147170 PREDICTED: similar to HIStone family member (his-72)...   104   3e-23
gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]          104   3e-23
gi|188528667 histone H3-like [Homo sapiens]                           102   8e-23
gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens]        93   8e-20
gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens]           62   1e-10
gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens]           62   1e-10
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo...    37   0.007
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ...    37   0.007
gi|126722969 centromere protein T [Homo sapiens]                       36   0.009
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         35   0.015

>gi|4502775 centromere protein A isoform a [Homo sapiens]
          Length = 140

 Score =  283 bits (725), Expect = 2e-77
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 60
           MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
Sbjct: 1   MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 60

Query: 61  LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 120
           LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT
Sbjct: 61  LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 120

Query: 121 LFPKDVQLARRIRGLEEGLG 140
           LFPKDVQLARRIRGLEEGLG
Sbjct: 121 LFPKDVQLARRIRGLEEGLG 140


>gi|109637779 centromere protein A isoform b [Homo sapiens]
          Length = 114

 Score =  217 bits (553), Expect = 2e-57
 Identities = 114/140 (81%), Positives = 114/140 (81%), Gaps = 26/140 (18%)

Query: 1   MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 60
           MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
Sbjct: 1   MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 60

Query: 61  LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 120
           LIRKLPFSRL                          AAEAFLVHLFEDAYLLTLHAGRVT
Sbjct: 61  LIRKLPFSRL--------------------------AAEAFLVHLFEDAYLLTLHAGRVT 94

Query: 121 LFPKDVQLARRIRGLEEGLG 140
           LFPKDVQLARRIRGLEEGLG
Sbjct: 95  LFPKDVQLARRIRGLEEGLG 114


>gi|53793688 histone cluster 2, H3a [Homo sapiens]
          Length = 136

 Score =  110 bits (276), Expect = 3e-25
 Identities = 67/132 (50%), Positives = 84/132 (63%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|31742503 histone cluster 2, H3c [Homo sapiens]
          Length = 136

 Score =  110 bits (276), Expect = 3e-25
 Identities = 67/132 (50%), Positives = 84/132 (63%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|183076548 histone cluster 2, H3d [Homo sapiens]
          Length = 136

 Score =  110 bits (276), Expect = 3e-25
 Identities = 67/132 (50%), Positives = 84/132 (63%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504287 histone cluster 1, H3e [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504295 histone cluster 1, H3h [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504289 histone cluster 1, H3i [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504281 histone cluster 1, H3a [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|10440560 histone cluster 1, H3f [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|21071021 histone cluster 1, H3d [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504297 histone cluster 1, H3b [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504293 histone cluster 1, H3j [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504285 histone cluster 1, H3c [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504291 H3 histone family, member H [Homo sapiens]
          Length = 136

 Score =  110 bits (275), Expect = 4e-25
 Identities = 67/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4885385 H3 histone, family 3B [Homo sapiens]
          Length = 136

 Score =  109 bits (273), Expect = 6e-25
 Identities = 68/132 (51%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  PS G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPSTGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A+ ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504279 H3 histone, family 3A [Homo sapiens]
          Length = 136

 Score =  109 bits (273), Expect = 6e-25
 Identities = 68/132 (51%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  PS G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSAPSTGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A+ ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|4504299 histone cluster 3, H3 [Homo sapiens]
          Length = 136

 Score =  107 bits (268), Expect = 2e-24
 Identities = 66/132 (50%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
           R+S   +APR++      T    +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 9   RKSTGGKAPRKQ----LATKVARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI   F    D  +Q+ A++ALQEA E++LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLMREIAQDFK--TDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIM 121

Query: 123 PKDVQLARRIRG 134
           PKD+QLARRIRG
Sbjct: 122 PKDIQLARRIRG 133


>gi|169167761 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score =  104 bits (259), Expect = 3e-23
 Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 9/131 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
           R++   +APR+    P  T    +R P  G     H R + G L  +EIRK QKST LL+
Sbjct: 9   RKATAWQAPRK----PLATKAAGKRAPPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI    +   D  +Q+ A+ ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQAISP--DLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121

Query: 123 PKDVQLARRIR 133
           P+D+QLARR+R
Sbjct: 122 PRDMQLARRLR 132


>gi|88987392 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score =  104 bits (259), Expect = 3e-23
 Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 9/131 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
           R++   +APR+    P  T    +R P  G     H R + G L  +EIRK QKST LL+
Sbjct: 9   RKATAWQAPRK----PLATKAAGKRAPPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI    +   D  +Q+ A+ ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQAISP--DLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121

Query: 123 PKDVQLARRIR 133
           P+D+QLARR+R
Sbjct: 122 PRDMQLARRLR 132


>gi|41147170 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score =  104 bits (259), Expect = 3e-23
 Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 9/131 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
           R++   +APR+    P  T    +R P  G     H R + G L  +EIRK QKST LL+
Sbjct: 9   RKATAWQAPRK----PLATKAAGKRAPPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI    +   D  +Q+ A+ ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQAISP--DLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121

Query: 123 PKDVQLARRIR 133
           P+D+QLARR+R
Sbjct: 122 PRDMQLARRLR 132


>gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 147

 Score =  104 bits (259), Expect = 3e-23
 Identities = 66/138 (47%), Positives = 85/138 (61%), Gaps = 11/138 (7%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
           R++   +APR+    P  T    +R    G     H R + G L  +EIRK QKST LL+
Sbjct: 9   RKATAWQAPRK----PLATKAARKRASPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
           RKLPF RL REI    +   D  +Q+ A+ ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 64  RKLPFQRLVREIAQAISP--DLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121

Query: 123 PKDVQLARRIRGLEEGLG 140
           P+D+QLARR+RG  EG G
Sbjct: 122 PRDMQLARRLRG--EGAG 137


>gi|188528667 histone H3-like [Homo sapiens]
          Length = 135

 Score =  102 bits (255), Expect = 8e-23
 Identities = 65/131 (49%), Positives = 82/131 (62%), Gaps = 8/131 (6%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSL-GASSHQHSRRRQGWLKEIRKLQKSTHLLIR 63
           R+S   +APR++      T    +  PS  G   H++ R     L+EIR+ QKST LLIR
Sbjct: 9   RKSTGGKAPRKQ----LATKAARKSTPSTCGVKPHRY-RPGTVALREIRRYQKSTELLIR 63

Query: 64  KLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFP 123
           KLPF RL REI   F    D  +Q+ A+ ALQEA+EA+LV L ED  L  +HA RVT+ P
Sbjct: 64  KLPFQRLVREIAQDFN--TDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMP 121

Query: 124 KDVQLARRIRG 134
           KD+QLARRIRG
Sbjct: 122 KDIQLARRIRG 132


>gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens]
          Length = 141

 Score = 92.8 bits (229), Expect = 8e-20
 Identities = 55/122 (45%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 14  RRRSPSPTPTPGPSRRGPSLGA-SSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAR 72
           R+ +     T    +  PS G      H R     L+EIR+ QK+T LLIRKL F RL +
Sbjct: 19  RKAARKQLGTKAAHKSAPSTGGVKKPHHYRPGTVALREIRRYQKATELLIRKLRFQRLVQ 78

Query: 73  EICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 132
           EI        D  +Q+ A+ ALQEA+EA+LV LFED+ L  +HA R+T+ PK++QLARRI
Sbjct: 79  EIAQDLK--TDLRFQSAAIGALQEASEAYLVGLFEDSNLCAIHAKRLTIMPKEIQLARRI 136

Query: 133 RG 134
           +G
Sbjct: 137 QG 138


>gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 193

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 9/100 (9%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
           R++   +APR+    P  T    +R    G     H R + G L  +EIRK QKST LL+
Sbjct: 54  RKATAWQAPRK----PLATKAARKRASPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 108

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFL 102
           RKLPF RL REI    +   D  +Q+ A+ ALQEA+EA+L
Sbjct: 109 RKLPFQRLVREIAQAIS--PDLRFQSAAIGALQEASEAYL 146


>gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 193

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 9/100 (9%)

Query: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
           R++   +APR+    P  T    +R    G     H R + G L  +EIRK QKST LL+
Sbjct: 54  RKATAWQAPRK----PLATKAARKRASPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 108

Query: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFL 102
           RKLPF RL REI    +   D  +Q+ A+ ALQEA+EA+L
Sbjct: 109 RKLPFQRLVREIAQAIS--PDLRFQSAAIGALQEASEAYL 146


>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 10  PEAPRRRSPSPTPTPGPSRRGPSLGASSHQHS 41
           P  PR+ SP PTP P P  RG +LG  S + S
Sbjct: 207 PGGPRQPSPGPTPPPFPGNRGTALGGGSIRQS 238



 Score = 26.6 bits (57), Expect = 7.1
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 3   PRRRSRKPEAPRRRSPS-----PTPTPGPSRRGP 31
           P  ++ KP  P    PS     P P P PSR GP
Sbjct: 285 PPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGP 318


>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 10  PEAPRRRSPSPTPTPGPSRRGPSLGASSHQHS 41
           P  PR+ SP PTP P P  RG +LG  S + S
Sbjct: 207 PGGPRQPSPGPTPPPFPGNRGTALGGGSIRQS 238



 Score = 26.6 bits (57), Expect = 7.1
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 3   PRRRSRKPEAPRRRSPS-----PTPTPGPSRRGP 31
           P  ++ KP  P    PS     P P P PSR GP
Sbjct: 285 PPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGP 318


>gi|126722969 centromere protein T [Homo sapiens]
          Length = 561

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 16/49 (32%), Positives = 30/49 (61%)

Query: 87  QAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135
           + +AL  +++  + +  HL +D  +   HAGR T+ P+D++L  R +GL
Sbjct: 476 ERKALEMVEKCLDKYFQHLCDDLEVFAAHAGRKTVKPEDLELLMRRQGL 524


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 35.4 bits (80), Expect = 0.015
 Identities = 24/51 (47%), Positives = 24/51 (47%), Gaps = 11/51 (21%)

Query: 5   RRSRKPEAP---RRRSPSP--------TPTPGPSRRGPSLGASSHQHSRRR 44
           RR R P  P   RRRSPSP        TPTP P RR PS        S RR
Sbjct: 545 RRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRR 595



 Score = 33.1 bits (74), Expect = 0.076
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 3   PRRRSRKPEAPRRRSPSPTP---TPGPSRRGPSL 33
           PRRR      PRRR+PSP P   +P P R  P +
Sbjct: 567 PRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPI 600



 Score = 31.2 bits (69), Expect = 0.29
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 12/41 (29%)

Query: 3   PRRRSRKPEAPRRRSPSP-----------TPTPGPSRRGPS 32
           PRRR+  P  PRRRSPSP           +P+P P RR  S
Sbjct: 577 PRRRTPSPP-PRRRSPSPRRYSPPIQRRYSPSPPPKRRTAS 616



 Score = 30.8 bits (68), Expect = 0.38
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 10/60 (16%)

Query: 5   RRSRKPEAPRRRSPSPTP-------TPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKS 57
           R +R P+  +R SPSP P       +P P RRG S   SS Q  +      + IR++ ++
Sbjct: 671 REARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGAS---SSPQRRQSPSPSTRPIRRVSRT 727



 Score = 30.0 bits (66), Expect = 0.65
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 3   PRRRSR---KPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKS 57
           PRRR R   +  +PRRR PSP   P P RR P          RR +  ++  R+   S
Sbjct: 298 PRRRHRSRSRSYSPRRR-PSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSAS 354



 Score = 29.3 bits (64), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 3   PRRRSRKPEAPRRRSPSPTPTPGPSRRGPS 32
           PR+R ++     RR  SP+P P   RR PS
Sbjct: 533 PRKRQKETSPRGRRRRSPSPPPTRRRRSPS 562



 Score = 29.3 bits (64), Expect = 1.1
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 3   PRRRSRKPEAP--RRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRK 53
           P+RR+  P  P  RR SPSP P    S   P    SS    RR      + RK
Sbjct: 610 PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRK 662



 Score = 29.3 bits (64), Expect = 1.1
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 10  PEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTH 59
           P  P +++ SPTP+P P R     G    +  ++ +   K+ +  +   H
Sbjct: 782 PAVPVKKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKH 831



 Score = 28.5 bits (62), Expect = 1.9
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 4   RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQ 45
           R RSR P   + RSPSP     P RR       SH  S R +
Sbjct: 166 RERSRSPRRRKSRSPSPRRRSSPVRRERK---RSHSRSPRHR 204



 Score = 26.2 bits (56), Expect = 9.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 3   PRRRSRK---PEAPRRRSPSPTPTPGPSRR 29
           P RR RK     +PR R+ S +P+P P ++
Sbjct: 188 PVRRERKRSHSRSPRHRTKSRSPSPAPEKK 217


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,337,628
Number of Sequences: 37866
Number of extensions: 321274
Number of successful extensions: 4910
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 4157
Number of HSP's gapped (non-prelim): 852
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.