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Search of human proteins with 42794273
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42794273 F-box and leucine-rich repeat protein 22 [Homo
sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42794273 F-box and leucine-rich repeat protein 22 [Homo sapiens] 501 e-142
gi|178557734 microtubule-associated protein tau isoform 6 [Homo ... 39 0.005
gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens] 39 0.005
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 38 0.007
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 38 0.007
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 37 0.012
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 37 0.015
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 37 0.015
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 35 0.045
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 35 0.045
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 35 0.045
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 35 0.045
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.058
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 35 0.058
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 35 0.058
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 35 0.058
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 35 0.058
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 35 0.058
gi|18079216 CASK interacting protein 1 [Homo sapiens] 35 0.076
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.076
gi|18702331 OTU domain containing 7A [Homo sapiens] 35 0.076
gi|41352718 deltex homolog 1 [Homo sapiens] 35 0.076
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 34 0.099
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 34 0.099
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 34 0.099
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 34 0.099
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 34 0.099
>gi|42794273 F-box and leucine-rich repeat protein 22 [Homo sapiens]
Length = 241
Score = 501 bits (1290), Expect = e-142
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTELQKDNFL 60
MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTELQKDNFL
Sbjct: 1 MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTELQKDNFL 60
Query: 61 LGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLSAVRSPR 120
LGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLSAVRSPR
Sbjct: 61 LGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLSAVRSPR 120
Query: 121 RREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETP 180
RREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETP
Sbjct: 121 RREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETP 180
Query: 181 PAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
PAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP
Sbjct: 181 PAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
Query: 241 Q 241
Q
Sbjct: 241 Q 241
>gi|178557734 microtubule-associated protein tau isoform 6 [Homo
sapiens]
Length = 776
Score = 38.5 bits (88), Expect = 0.005
Identities = 36/128 (28%), Positives = 47/128 (36%), Gaps = 20/128 (15%)
Query: 125 PAPSSGTPI------AVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGL-GSLRAERPS 177
P P S P+ AV P+ P P H R+G +GA+ +G G + P
Sbjct: 415 PTPGSSDPLIQPSSPAVCPEPP--SSPKHVSSVTSRTGSSGAKEMKLKGADGKTKIATPR 472
Query: 178 ETPPAPGVSWG----------PPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTR 227
P PG PP P P + KQ + + G RS R PP R+
Sbjct: 473 GAAP-PGQKGQANATRIPAKTPPAPKTPPSSATKQVQRRPPPAGPRSERGEPPKSGDRSG 531
Query: 228 VCPPTFPG 235
P PG
Sbjct: 532 YSSPGSPG 539
>gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens]
Length = 251
Score = 38.5 bits (88), Expect = 0.005
Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 128 SSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERP-------SETP 180
S+G P PK P+ PD E A+ RAAA ++ E P P
Sbjct: 148 SAGDPPEDAPKRPKEAAPDQEEEAEAERAAEAERAAAAAAATAVDEESPFLVAVENGSAP 207
Query: 181 PAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCG 222
PG+ PP P +++EE + H AP G
Sbjct: 208 SEPGLVCEPPQPEEE---ELREEEVADEEASQEWHAEAPGGG 246
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 38.1 bits (87), Expect = 0.007
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 15/133 (11%)
Query: 112 RLSAVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSL 171
RL+A R P +R A A +S + A GP +E AD + R A +L
Sbjct: 473 RLTAARVPLQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTL 532
Query: 172 RAERPSETPPAPGVSWGPP------------PPGAPVVISVKQEEGKQGRTGRRSHRAAP 219
R RP + P G P PP AP + ++ G R R
Sbjct: 533 RQTRPKQPAPLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARY-- 590
Query: 220 PCGFARTRVCPPT 232
PCG + +RV P+
Sbjct: 591 PCG-SSSRVAVPS 602
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 38.1 bits (87), Expect = 0.007
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 15/133 (11%)
Query: 112 RLSAVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSL 171
RL+A R P +R A A +S + A GP +E AD + R A +L
Sbjct: 473 RLTAARVPLQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTL 532
Query: 172 RAERPSETPPAPGVSWGPP------------PPGAPVVISVKQEEGKQGRTGRRSHRAAP 219
R RP + P G P PP AP + ++ G R R
Sbjct: 533 RQTRPKQPAPLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARY-- 590
Query: 220 PCGFARTRVCPPT 232
PCG + +RV P+
Sbjct: 591 PCG-SSSRVAVPS 602
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 37.4 bits (85), Expect = 0.012
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 124 APAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRG-LGSLRAERPSETPPA 182
+P+ G P + G H A + A ++ G LGSL PS +PPA
Sbjct: 269 SPSGYGGLPYGAAAAAAAAAGGAHQNSAVAAAAAAAAASSGALGALGSLVKSEPSGSPPA 328
Query: 183 PGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADA 238
P S P P +IS+ G+ G + AA +R P + GA A
Sbjct: 329 PAHSRAPCPGDLREMISMYLPAGEGGDPAAAAAAAAQ----SRLHSLPQHYQGAGA 380
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 37.0 bits (84), Expect = 0.015
Identities = 40/123 (32%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 115 AVRSPRRREAPAPSSGTPIAV--GPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLR 172
A RSPR P P +AV G ++PR D +E R G A R G L
Sbjct: 194 AFRSPRPVRGPHPRRAVVVAVLFGVQAPR---RDVAEGGLRRDGRRPGLAPQRGRGGLLL 250
Query: 173 AERPSETPPAPGVSWGPP-PPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPP 231
+ T P + GP PP PV + Q +Q R R R+ P TR CP
Sbjct: 251 VVLHAATVQRPRLGRGPSRPPRGPVGVCRPQVAQRQ-RLARVCVRSLPGNRRLATRSCPA 309
Query: 232 TFP 234
FP
Sbjct: 310 AFP 312
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 37.0 bits (84), Expect = 0.015
Identities = 40/123 (32%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 115 AVRSPRRREAPAPSSGTPIAV--GPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLR 172
A RSPR P P +AV G ++PR D +E R G A R G L
Sbjct: 164 AFRSPRPVRGPHPRRAVVVAVLFGVQAPR---RDVAEGGLRRDGRRPGLAPQRGRGGLLL 220
Query: 173 AERPSETPPAPGVSWGPP-PPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPP 231
+ T P + GP PP PV + Q +Q R R R+ P TR CP
Sbjct: 221 VVLHAATVQRPRLGRGPSRPPRGPVGVCRPQVAQRQ-RLARVCVRSLPGNRRLATRSCPA 279
Query: 232 TFP 234
FP
Sbjct: 280 AFP 282
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 37.0 bits (84), Expect = 0.015
Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 118 SPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPS 177
+P +EAP P GT V P G P A R G R RG+ S R
Sbjct: 1118 APSDKEAPTPKEGTLTQVPLAPPPPGAPPSP--APARFTARGGRVFTPRGVPSRRGRGGG 1175
Query: 178 ETPPAPGVSWGPP--------PPGAPV 196
PP W PP PP P+
Sbjct: 1176 RPPPQVCPGWSPPAKSLAPKKPPTGPL 1202
Score = 32.3 bits (72), Expect = 0.38
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 172 RAERPSETPPAPGVSW-----------GPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPP 220
+ P+ PP P +W GPP P P+ + G G G R PP
Sbjct: 377 KGNSPNSEPPTPKTAWAETSRPPETEPGPPAPKPPLPPPHRGPAGNWGPPGDYPDRGGPP 436
Query: 221 C 221
C
Sbjct: 437 C 437
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 35.4 bits (80), Expect = 0.045
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 21/125 (16%)
Query: 117 RSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERP 176
R PRRR A ++G+ K PRW + G +AAA G+ S E+P
Sbjct: 121 RKPRRRGQKAAATGS------KKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKP 174
Query: 177 SETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRT------------GRRS--HRAAPPCG 222
+ A S P S + +E K+GR GRR R P G
Sbjct: 175 QKAAAAGAKSRSGKKPRRRGAKS-RGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAG 233
Query: 223 FARTR 227
A++R
Sbjct: 234 GAKSR 238
Score = 29.3 bits (64), Expect = 3.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 117 RSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRG 167
++PRRR AP++ P G K PR GP ++ +S G + RRG
Sbjct: 405 QNPRRRAQKAPAA-KPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRG 454
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 35.4 bits (80), Expect = 0.045
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 114 SAVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRA 173
+ RS R P P GT + G ++ R G A RS + R AA G G+ R
Sbjct: 144 AGTRSVPARRLPPPCGGTSLGAGSRALRRPG----SAALPRSPSSSRRWAAMPGPGAPRP 199
Query: 174 ERPSE--------TPPAPGVSWGPPPP---GAP 195
P PPA S PPPP GAP
Sbjct: 200 GAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232
Score = 34.7 bits (78), Expect = 0.076
Identities = 34/102 (33%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 127 PSSGTPIAVGPKSPRWGGPDH-SEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGV 185
P +G P+ +S WG P S A R+G G A G G A R S PAPG
Sbjct: 69 PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRA-PGRGRAAATRRS---PAPGT 124
Query: 186 SWGPPPPGAPVVISVKQEEGKQGRT--GRRS---HRAAPPCG 222
+ G P V++ G + G RS R PPCG
Sbjct: 125 ARGSP-------AGVERAGGATAASSAGTRSVPARRLPPPCG 159
Score = 31.6 bits (70), Expect = 0.64
Identities = 41/129 (31%), Positives = 45/129 (34%), Gaps = 22/129 (17%)
Query: 120 RRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGAR-----AAARRGLGSLRAE 174
RR AP + G+P V R GG + A RS V R G GS
Sbjct: 117 RRSPAPGTARGSPAGV----ERAGGATAASSAGTRS-VPARRLPPPCGGTSLGAGSRALR 171
Query: 175 RPSET--PPAPGVS--WGPPP-PGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVC 229
RP P +P S W P PGAP G G AAPP A
Sbjct: 172 RPGSAALPRSPSSSRRWAAMPGPGAP-------RPGAPGTWPVGFAVAAPPAAAASVAPP 224
Query: 230 PPTFPGADA 238
PP GA A
Sbjct: 225 PPAVAGAPA 233
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 35.4 bits (80), Expect = 0.045
Identities = 34/116 (29%), Positives = 37/116 (31%), Gaps = 7/116 (6%)
Query: 128 SSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRG--LGSLRAERPSETPPAP-G 184
S G+P GP P GP GV GA G L P PP P G
Sbjct: 603 SPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPG 662
Query: 185 VSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
P P G P + + G G G P GF PP G FP
Sbjct: 663 PPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPG----PPGPKGDQGFP 714
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 128 SSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSW 187
S G P +GPK P GV G + + + P TP PG+
Sbjct: 1329 SIGPPGPIGPKGP--------------PGVRGDPGTLKI-ISLPGSPGPPGTPGEPGMQG 1373
Query: 188 GPPPPGAPVVISVKQEEGKQGRTGR 212
P PPG P + GK G+ G+
Sbjct: 1374 EPGPPGPPGNLGPCGPRGKPGKDGK 1398
Score = 28.5 bits (62), Expect = 5.5
Identities = 39/127 (30%), Positives = 48/127 (37%), Gaps = 27/127 (21%)
Query: 126 APSSGTPIAVGPKSP------RWGGP-DHSEFADLRS-GVTGARAAARRGLGSLRAERPS 177
A S G P + GP P R G P DH L S G+ G +G L +
Sbjct: 423 AGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGP--KGEPGLLCTQCP 480
Query: 178 ETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPP----CGFARTRVCPPTF 233
P PG+ PG P + VK G+QG G + +P GF P F
Sbjct: 481 YIPGPPGL------PGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGF-------PGF 527
Query: 234 PGADAFP 240
PGA P
Sbjct: 528 PGAQGDP 534
Score = 28.5 bits (62), Expect = 5.5
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 134 AVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGPPPPG 193
A+G PR GP E G+ GA + G R S P P P PPG
Sbjct: 1208 AMGDAGPR--GPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGP-----PGPPG 1260
Query: 194 APVVISVKQEEGKQGRTG 211
+ VI +K ++G G G
Sbjct: 1261 SH-VIGIKGDKGSMGHPG 1277
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 35.4 bits (80), Expect = 0.045
Identities = 34/116 (29%), Positives = 37/116 (31%), Gaps = 7/116 (6%)
Query: 128 SSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRG--LGSLRAERPSETPPAP-G 184
S G+P GP P GP GV GA G L P PP P G
Sbjct: 603 SPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPG 662
Query: 185 VSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
P P G P + + G G G P GF PP G FP
Sbjct: 663 PPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPG----PPGPKGDQGFP 714
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 128 SSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSW 187
S G P +GPK P GV G + + + P TP PG+
Sbjct: 1329 SIGPPGPIGPKGP--------------PGVRGDPGTLKI-ISLPGSPGPPGTPGEPGMQG 1373
Query: 188 GPPPPGAPVVISVKQEEGKQGRTGR 212
P PPG P + GK G+ G+
Sbjct: 1374 EPGPPGPPGNLGPCGPRGKPGKDGK 1398
Score = 28.5 bits (62), Expect = 5.5
Identities = 39/127 (30%), Positives = 48/127 (37%), Gaps = 27/127 (21%)
Query: 126 APSSGTPIAVGPKSP------RWGGP-DHSEFADLRS-GVTGARAAARRGLGSLRAERPS 177
A S G P + GP P R G P DH L S G+ G +G L +
Sbjct: 423 AGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGP--KGEPGLLCTQCP 480
Query: 178 ETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPP----CGFARTRVCPPTF 233
P PG+ PG P + VK G+QG G + +P GF P F
Sbjct: 481 YIPGPPGL------PGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGF-------PGF 527
Query: 234 PGADAFP 240
PGA P
Sbjct: 528 PGAQGDP 534
Score = 28.5 bits (62), Expect = 5.5
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 134 AVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGPPPPG 193
A+G PR GP E G+ GA + G R S P P P PPG
Sbjct: 1208 AMGDAGPR--GPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGP-----PGPPG 1260
Query: 194 APVVISVKQEEGKQGRTG 211
+ VI +K ++G G G
Sbjct: 1261 SH-VIGIKGDKGSMGHPG 1277
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 35.4 bits (80), Expect = 0.045
Identities = 34/116 (29%), Positives = 37/116 (31%), Gaps = 7/116 (6%)
Query: 128 SSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRG--LGSLRAERPSETPPAP-G 184
S G+P GP P GP GV GA G L P PP P G
Sbjct: 603 SPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPG 662
Query: 185 VSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
P P G P + + G G G P GF PP G FP
Sbjct: 663 PPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPG----PPGPKGDQGFP 714
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 128 SSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSW 187
S G P +GPK P GV G + + + P TP PG+
Sbjct: 1329 SIGPPGPIGPKGP--------------PGVRGDPGTLKI-ISLPGSPGPPGTPGEPGMQG 1373
Query: 188 GPPPPGAPVVISVKQEEGKQGRTGR 212
P PPG P + GK G+ G+
Sbjct: 1374 EPGPPGPPGNLGPCGPRGKPGKDGK 1398
Score = 28.5 bits (62), Expect = 5.5
Identities = 39/127 (30%), Positives = 48/127 (37%), Gaps = 27/127 (21%)
Query: 126 APSSGTPIAVGPKSP------RWGGP-DHSEFADLRS-GVTGARAAARRGLGSLRAERPS 177
A S G P + GP P R G P DH L S G+ G +G L +
Sbjct: 423 AGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGP--KGEPGLLCTQCP 480
Query: 178 ETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPP----CGFARTRVCPPTF 233
P PG+ PG P + VK G+QG G + +P GF P F
Sbjct: 481 YIPGPPGL------PGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGF-------PGF 527
Query: 234 PGADAFP 240
PGA P
Sbjct: 528 PGAQGDP 534
Score = 28.5 bits (62), Expect = 5.5
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 134 AVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGPPPPG 193
A+G PR GP E G+ GA + G R S P P P PPG
Sbjct: 1208 AMGDAGPR--GPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGP-----PGPPG 1260
Query: 194 APVVISVKQEEGKQGRTG 211
+ VI +K ++G G G
Sbjct: 1261 SH-VIGIKGDKGSMGHPG 1277
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 35.4 bits (80), Expect = 0.045
Identities = 34/116 (29%), Positives = 37/116 (31%), Gaps = 7/116 (6%)
Query: 128 SSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRG--LGSLRAERPSETPPAP-G 184
S G+P GP P GP GV GA G L P PP P G
Sbjct: 603 SPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPG 662
Query: 185 VSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
P P G P + + G G G P GF PP G FP
Sbjct: 663 PPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPG----PPGPKGDQGFP 714
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 128 SSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSW 187
S G P +GPK P GV G + + + P TP PG+
Sbjct: 1329 SIGPPGPIGPKGP--------------PGVRGDPGTLKI-ISLPGSPGPPGTPGEPGMQG 1373
Query: 188 GPPPPGAPVVISVKQEEGKQGRTGR 212
P PPG P + GK G+ G+
Sbjct: 1374 EPGPPGPPGNLGPCGPRGKPGKDGK 1398
Score = 28.5 bits (62), Expect = 5.5
Identities = 39/127 (30%), Positives = 48/127 (37%), Gaps = 27/127 (21%)
Query: 126 APSSGTPIAVGPKSP------RWGGP-DHSEFADLRS-GVTGARAAARRGLGSLRAERPS 177
A S G P + GP P R G P DH L S G+ G +G L +
Sbjct: 423 AGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGP--KGEPGLLCTQCP 480
Query: 178 ETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPP----CGFARTRVCPPTF 233
P PG+ PG P + VK G+QG G + +P GF P F
Sbjct: 481 YIPGPPGL------PGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGF-------PGF 527
Query: 234 PGADAFP 240
PGA P
Sbjct: 528 PGAQGDP 534
Score = 28.5 bits (62), Expect = 5.5
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 134 AVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGPPPPG 193
A+G PR GP E G+ GA + G R S P P P PPG
Sbjct: 1208 AMGDAGPR--GPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGP-----PGPPG 1260
Query: 194 APVVISVKQEEGKQGRTG 211
+ VI +K ++G G G
Sbjct: 1261 SH-VIGIKGDKGSMGHPG 1277
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.0 bits (79), Expect = 0.058
Identities = 42/147 (28%), Positives = 48/147 (32%), Gaps = 31/147 (21%)
Query: 117 RSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAAR-RGLGSLRAER 175
+ PR E P G P GP GP + AD + G GA A G R
Sbjct: 358 QGPRGSEGPQGVRGEPGPPGPAGA--AGPAGNPGADGQPGAKGANGAPGIAGAPGFPGAR 415
Query: 176 PSETPPAPGVSWGPPPP-------------------GAPVVISVKQEEGKQGRTGRRSHR 216
P PG GPP P G P + V+ G G G+R R
Sbjct: 416 GPSGPQGPG---GPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR 472
Query: 217 AAP-PCGF-----ARTRVCPPTFPGAD 237
P P G R FPGAD
Sbjct: 473 GEPGPTGLPGPPGERGGPGSRGFPGAD 499
Score = 31.6 bits (70), Expect = 0.64
Identities = 40/124 (32%), Positives = 46/124 (37%), Gaps = 19/124 (15%)
Query: 125 PAPSSGTPIAVGPK-SPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAP 183
PA G P + G +P GP R G G A AR G+ A P P
Sbjct: 282 PAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGP-AGARGNDGATGAAGP------P 334
Query: 184 GVSWGPPPPGAPVVISVKQEEGKQ---GRTGRRSHRAAP----PCGFARTRVCPPTFPGA 236
G + PPG P + K E G Q G G + R P P G A P PGA
Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAG----PAGNPGA 390
Query: 237 DAFP 240
D P
Sbjct: 391 DGQP 394
Score = 31.6 bits (70), Expect = 0.64
Identities = 35/114 (30%), Positives = 40/114 (35%), Gaps = 17/114 (14%)
Query: 130 GTPIAVGPKSPRWGGPDHSEFADLRSGVTGAR-------AAARRGLGSLRAERPSETPPA 182
G P A GP R G D + A G TG A +G + R SE P
Sbjct: 311 GRPGAPGPAGAR--GNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQ- 367
Query: 183 PGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGA 236
GV P PPG G G+ G + AP A P FPGA
Sbjct: 368 -GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGA------PGFPGA 414
Score = 31.6 bits (70), Expect = 0.64
Identities = 45/149 (30%), Positives = 53/149 (35%), Gaps = 36/149 (24%)
Query: 116 VRSPRRREAPAPSSGTPIAVGPKSPRWG-GPDHSEFADLRSGVTGARAAARRGLGSLRAE 174
V+ P P ++G P G K G S+ A G+ G R AA GL + +
Sbjct: 687 VQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAA--GLPGPKGD 744
Query: 175 R----PSETPPAPGVSW--------GPP-PPGAPVVISVKQEEGKQGRTGRRSHRAAP-- 219
R P +PG GPP P GAP K E G G G R AP
Sbjct: 745 RGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAP---GDKGESGPSGPAGPTGARGAPGD 801
Query: 220 --------PCGFARTRVCPPTFPGADAFP 240
P GFA PGAD P
Sbjct: 802 RGEPGPPGPAGFAGP-------PGADGQP 823
Score = 30.8 bits (68), Expect = 1.1
Identities = 41/133 (30%), Positives = 49/133 (36%), Gaps = 30/133 (22%)
Query: 117 RSPRRREAPAPSSGTPIAVGPKSPRW-GGPDHSEFADLRSGVTGARA----AARRGLGSL 171
+ PR PA G P VGP P G S AD +G G A +RG+ L
Sbjct: 907 KGPRGETGPA---GRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGL 963
Query: 172 RAERPSETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAP----PCGFARTR 227
+R PG+ P P G P GKQG +G R P P G A
Sbjct: 964 PGQRGERG--FPGL---PGPSGEP---------GKQGPSGASGERGPPGPMGPPGLAG-- 1007
Query: 228 VCPPTFPGADAFP 240
PP G + P
Sbjct: 1008 --PPGESGREGAP 1018
Score = 30.8 bits (68), Expect = 1.1
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 122 REAPAPSSGTPIAVGPKSPRW--GGPDHSEFADLRSGVTGARAA-ARRGLGSLRAER--- 175
++ P+ +SG GP P G P S R G GA + R G + +R
Sbjct: 984 KQGPSGASGERGPPGPMGPPGLAGPPGESG----REGAPGAEGSPGRDGSPGAKGDRGET 1039
Query: 176 -PSETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTG 211
P+ P APG PGAP + + G +G TG
Sbjct: 1040 GPAGPPGAPGA------PGAPGPVGPAGKSGDRGETG 1070
Score = 28.5 bits (62), Expect = 5.5
Identities = 34/108 (31%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 129 SGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARR-GLGSLRAERPSETPPAPGVSW 187
+G P GP P GP + A G GAR +A G PP P +
Sbjct: 838 AGPPGPAGPAGPP--GPIGNVGAP---GAKGARGSAGPPGATGFPGAAGRVGPPGPSGNA 892
Query: 188 GPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPG 235
GPP P P GK+G G R P G V PP PG
Sbjct: 893 GPPGPPGPA--------GKEGGKGPRGETG--PAG-RPGEVGPPGPPG 929
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 35.0 bits (79), Expect = 0.058
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 125 PAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPG 184
PA + P S GPD +E + SG+ R SLR+ S + PA G
Sbjct: 127 PAQTGPRPARAAGMSEARKGPDEAEESQYDSGIESLR--------SLRSLPESTSAPASG 178
Query: 185 VSWGPPPPGAPVVISVKQEEGKQGRTGRRS 214
S G P P VK+ + K+ G R+
Sbjct: 179 PSDGSPQPCTHPPGPVKEPQEKEDADGERA 208
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.058
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 25/112 (22%)
Query: 120 RRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRG--LGSLRA-ERP 176
RR AP + P GP S H L VTG + LG+ A R
Sbjct: 56 RRPGHTAPRTQQPKPSGPSS-------HPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH 108
Query: 177 SETPPAPGVS--WGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFART 226
+ PP+PG W PPPPGA TG R HR PP A T
Sbjct: 109 RQKPPSPGSRHRWEPPPPGAATA------------TGSR-HRREPPSPGATT 147
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.058
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 25/112 (22%)
Query: 120 RRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRG--LGSLRA-ERP 176
RR AP + P GP S H L VTG + LG+ A R
Sbjct: 56 RRPGHTAPRTQQPKPSGPSS-------HPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH 108
Query: 177 SETPPAPGVS--WGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFART 226
+ PP+PG W PPPPGA TG R HR PP A T
Sbjct: 109 RQKPPSPGSRHRWEPPPPGAATA------------TGSR-HRREPPSPGATT 147
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.058
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 25/112 (22%)
Query: 120 RRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRG--LGSLRA-ERP 176
RR AP + P GP S H L VTG + LG+ A R
Sbjct: 56 RRPGHTAPRTQQPKPSGPSS-------HPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH 108
Query: 177 SETPPAPGVS--WGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFART 226
+ PP+PG W PPPPGA TG R HR PP A T
Sbjct: 109 RQKPPSPGSRHRWEPPPPGAATA------------TGSR-HRREPPSPGATT 147
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 35.0 bits (79), Expect = 0.058
Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 21/120 (17%)
Query: 119 PRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSE 178
P+ PA +G P A G + G P +D + G G + GL + P
Sbjct: 360 PKGETGPAGPAGYPGAKGER----GSPG----SDGKPGYPG-----KPGL-----DGPKG 401
Query: 179 TPPAPGVSWGPP---PPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPG 235
P PG P PPG P + +G G G R AP R + PP PG
Sbjct: 402 NPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPG 461
Score = 33.5 bits (75), Expect = 0.17
Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 16/109 (14%)
Query: 125 PAPSSGTPIAVGPKS-PRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPP-- 181
PA G P GP P +G P L G G A + G+ L +P E P
Sbjct: 67 PAGPRGHPGPSGPPGKPGYGSPGLQGEPGL-PGPPGPSAVGKPGVPGLPG-KPGERGPYG 124
Query: 182 ---------APGVSWGPPPPG--APVVISVKQEEGKQGRTGRRSHRAAP 219
PG P PPG P ISV + G+QG TG R P
Sbjct: 125 PKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFP 173
Score = 28.5 bits (62), Expect = 5.5
Identities = 33/115 (28%), Positives = 39/115 (33%), Gaps = 20/115 (17%)
Query: 130 GTPIAVGPKS-PRWGGPDHSEFADLRSGVTG-ARAAARRGLGSLRAER-PSETPPAPGVS 186
G P GPK P GGP G+ G A +G+ E P P PG
Sbjct: 401 GNPGLPGPKGDPGVGGPP---------GLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTR 451
Query: 187 WGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFPQ 241
PPG P K + G G G P G A + PT P P+
Sbjct: 452 GPIGPPGIPGFPGSKGDPGSPGPPG--------PAGIATKGLNGPTGPPGPPGPR 498
Score = 28.1 bits (61), Expect = 7.1
Identities = 35/123 (28%), Positives = 40/123 (32%), Gaps = 29/123 (23%)
Query: 130 GTPIAVGPKSPRWGGPDHSEFADLRS--GVTGARAAARRGLGSLRAERPSETPPAPGV-- 185
G P VGP + G P H+ A R G+ G R P P PG
Sbjct: 419 GLPGPVGPAGAK-GMPGHNGEAGPRGAPGIPGTRGPIG----------PPGIPGFPGSKG 467
Query: 186 ---SWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAP----PCGFARTRVCPPTFPGADA 238
S GPP P + G G G R H P P G PP PG
Sbjct: 468 DPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPG-------PPGPPGQAV 520
Query: 239 FPQ 241
P+
Sbjct: 521 MPE 523
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 34.7 bits (78), Expect = 0.076
Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 121 RREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETP 180
R+ A P S P+ P G P + ++ G GS +R TP
Sbjct: 1219 RKPAKPPVSPKPVLTQPVPKLQGSPTPT-----------SKKVPLPGPGSPEVKRAHGTP 1267
Query: 181 PAPGVSWGPPPPGAPVVISVKQ--EEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADA 238
P P PPPP AP + G G + S PP A+ PP+ + A
Sbjct: 1268 P-PVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPA 1326
Query: 239 FP 240
P
Sbjct: 1327 KP 1328
Score = 33.9 bits (76), Expect = 0.13
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 112 RLSAVRSPRRREAPAPSSGTP-----------IAVGPKSPRWGGPDHSEFADLRSGVTG- 159
+L +P ++ P P G+P ++ P P A L SG G
Sbjct: 1238 KLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGP 1297
Query: 160 --ARAAARRGLGSLRAERPSETPPAPGVSWG-PPPPGAPVV-ISVKQEEGKQGRTGRRSH 215
A + AR+ +L +P TPP+ G S PP PGAP + + K +
Sbjct: 1298 SPAPSPARQPPAALA--KPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAA 1355
Query: 216 RAAPPCG 222
APP G
Sbjct: 1356 PPAPPEG 1362
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.7 bits (78), Expect = 0.076
Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 118 SPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGAR----AAARRGLGSLRA 173
SP + P P+ T P SP GP G GA+ A G+ +
Sbjct: 898 SPGKDGPPGPAGNTG---APGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITG 954
Query: 174 ERPSETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAP 219
R PP P P G+P VK E GK G G R P
Sbjct: 955 ARGLAGPPGM-----PGPRGSPGPQGVKGESGKPGANGLSGERGPP 995
Score = 34.3 bits (77), Expect = 0.099
Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 134 AVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGPPPPG 193
A GP PR G P R G+ GA A AR G+ ++ P PG + P PG
Sbjct: 295 APGPMGPR-GAPGERG----RPGLPGA-AGARGNDGARGSDGQPGPPGPPGTAGFPGSPG 348
Query: 194 APVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
A + G G G+R P G A + PP PG + P
Sbjct: 349 AKGEVGPAGSPGSNGAPGQRGEPG--PQGHAGAQ-GPPGPPGINGSP 392
Score = 32.3 bits (72), Expect = 0.38
Identities = 22/67 (32%), Positives = 27/67 (40%)
Query: 169 GSLRAERPSETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRV 228
GS + P P G S P PPGA ++G+ GR GR R P +
Sbjct: 195 GSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPA 254
Query: 229 CPPTFPG 235
P FPG
Sbjct: 255 GIPGFPG 261
Score = 31.2 bits (69), Expect = 0.84
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 118 SPRRREAPAPSS-----GTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLR 172
+P +P P+ G+P GP+ P GP D SG G G R
Sbjct: 1114 NPGAPGSPGPAGQQGAIGSPGPAGPRGPV--GPSGPPGKDGTSGHPGPIGPP--GPRGNR 1169
Query: 173 AERPSETPPA-PGVSWGPPPPGAP 195
ER SE P PG P PPGAP
Sbjct: 1170 GERGSEGSPGHPGQPGPPGPPGAP 1193
Score = 30.4 bits (67), Expect = 1.4
Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 16/109 (14%)
Query: 125 PAPSSGTPIAVGPKSPRWG----GPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETP 180
PA +G P GP R GP + R GV G RG+ S+
Sbjct: 493 PAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG--PGMRGMPGSPGGPGSDGK 550
Query: 181 PAP----GVSWGPPPPGA------PVVISVKQEEGKQGRTGRRSHRAAP 219
P P G S P PPG P V+ +G G G+ R P
Sbjct: 551 PGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP 599
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 137 PKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGPPPPGAPV 196
P P+ P + + D++SGV A G P P PG S P PG+P
Sbjct: 145 PTGPQNYSPQYDSY-DVKSGVAVGGLAGYPGPAG-----PPGPPGPPGTSGHPGSPGSPG 198
Query: 197 VISVKQEEGKQGRTG 211
E G+ G +G
Sbjct: 199 YQGPPGEPGQAGPSG 213
Score = 29.6 bits (65), Expect = 2.5
Identities = 28/92 (30%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 130 GTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSET--PPAPGVSW 187
G P GP P GP G G A + S R RP E P PG+
Sbjct: 204 GEPGQAGPSGPP--GPP---------GAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKG 252
Query: 188 GPPPPGAPVVISVKQEEGKQGRTGRRSHRAAP 219
P G P +K G GR G + AP
Sbjct: 253 ---PAGIPGFPGMKGHRGFDGRNGEKGETGAP 281
Score = 28.1 bits (61), Expect = 7.1
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 128 SSGTPIAVGPK-SPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSE--TPPAPG 184
++G P A G + +P + GP G G R A A P P PG
Sbjct: 475 ANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPG 534
Query: 185 VSWGPPPPGAPVVISVKQEEGKQGRTGR 212
+ P PG P G QG +GR
Sbjct: 535 MRGMPGSPGGPGSDGKPGPPGSQGESGR 562
Score = 27.7 bits (60), Expect = 9.3
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 123 EAPAPSS-GTPIAVGPKSPRWG-GPDHSEFADLRSGVTGARAAARR-GLGSLRAERPSET 179
+A AP G P G R G GP E +G G AA GL + ER
Sbjct: 676 DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLG 735
Query: 180 PPAPGVSWGPPPPGAPVVISVKQEEGKQGRTG 211
P P G P G P V ++G +G TG
Sbjct: 736 SPGPKGDKGEP--GGPGADGVPGKDGPRGPTG 765
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 34.7 bits (78), Expect = 0.076
Identities = 40/152 (26%), Positives = 56/152 (36%), Gaps = 33/152 (21%)
Query: 98 HESLVNDFLLRVCDRLSAVRSPRRREAPAPSSGTPIAVG------PKSPRWGG---PDHS 148
HE ++ +L +R SA + RRR+A ++ A P+ P G P+ +
Sbjct: 650 HEEMIGYYLTSAQERFSAEQEQRRRDAATAAAAAAAAAAATAKRPPRRPETEGVPVPERA 709
Query: 149 ----------EFADLRSGVTGARAAARRGLGSLR-----AERPSETPPAPGVSWGPPPPG 193
+ + S A AAR G A R S + P PG S PP P
Sbjct: 710 SPGPPTQLVLKLKERPSPGPAAGRAARAAAGGTASPGGGARRASASGPVPGRS--PPAPA 767
Query: 194 APVVISVKQEEGKQGRTGRRSHRAAPPCGFAR 225
VI V+ +G R AP G R
Sbjct: 768 RQSVIHVQ-------ASGARDEACAPAVGALR 792
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 34.7 bits (78), Expect = 0.076
Identities = 40/125 (32%), Positives = 49/125 (39%), Gaps = 16/125 (12%)
Query: 120 RRREAPAPSSGTPIAVG--PKSPRW------GGPDHSEFADLRSGVTGARAAARRGLGSL 171
RRR P+ VG PKS W G P + L V RAA+ L S
Sbjct: 166 RRRLRRRLDLAYPLTVGSIPKSQSWPVGASSGQPCSCQQCLL---VNSTRAASNAILASQ 222
Query: 172 RAERPSETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPP 231
R + PPAP + PPP G P ++V+ G + AA P A PP
Sbjct: 223 RRK----APPAPPLPPPPPPGGPPGALAVRPSATFTG-AALWAAPAAGPAEPAPPPGAPP 277
Query: 232 TFPGA 236
PGA
Sbjct: 278 RSPGA 282
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 34.3 bits (77), Expect = 0.099
Identities = 39/119 (32%), Positives = 46/119 (38%), Gaps = 25/119 (21%)
Query: 130 GTPIAVGPKS----PRWGGPDHSEFADLRSGVTGARAAARRG----LGSLRAERPSETPP 181
G P GPK P + G + + A +G G R +RG GS A P+ P
Sbjct: 856 GYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRG--QRGPTGPRGSRGARGPTGKPG 913
Query: 182 APGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
G S G PPG P E G QG G P GF + PP PG D P
Sbjct: 914 PKGTSGGDGPPGPP------GERGPQGPQG--------PVGFPGPK-GPPGPPGKDGLP 957
Score = 30.8 bits (68), Expect = 1.1
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 117 RSPRRREAPAPSSGTPIAVGPKS---PRWGGPDHSEFADLRSGVTGARAAARRGLGSLRA 173
R + P ++G P A GP P+ G P F A + G+G +
Sbjct: 1290 RGEKGEAGPPGAAGPPGAKGPPGDDGPK-GNPGPVGFPGDPGPPGEPGPAGQDGVGGDKG 1348
Query: 174 ER--PSET-PPAPGVSWGPP-PPGAPVVISVKQEEGKQGRTGRRSHRAA--PP 220
E P + PP P GPP PPG EG+QG G + A PP
Sbjct: 1349 EDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1401
Score = 28.9 bits (63), Expect = 4.2
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 136 GPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGPPPPGAP 195
GP PR GP AD G G+ + G+G PG + P PPG
Sbjct: 1234 GPPGPR--GPQGPNGADGPQGPPGSVGSVG-GVGE---------KGEPGEAGNPGPPGEA 1281
Query: 196 VVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
V K E G++G G P P PG FP
Sbjct: 1282 GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFP 1326
Score = 28.1 bits (61), Expect = 7.1
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 141 RWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAP-GVSWGPPPPGAPVVIS 199
R+GG D S+ + + A+A ++ +LR PP P G++ P P G P
Sbjct: 510 RYGG-DGSKGPTISAQEAQAQAILQQARIALRG------PPGPMGLTGRPGPVGGPGSSG 562
Query: 200 VKQEEGKQGRTGRRSHRAAP-PCGFARTRVCPPTFPGAD 237
K E G G G R + P P G R PGAD
Sbjct: 563 AKGESGDPGPQGPRGVQGPPGPTGKPGKR----GRPGAD 597
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 34.3 bits (77), Expect = 0.099
Identities = 39/119 (32%), Positives = 46/119 (38%), Gaps = 25/119 (21%)
Query: 130 GTPIAVGPKS----PRWGGPDHSEFADLRSGVTGARAAARRG----LGSLRAERPSETPP 181
G P GPK P + G + + A +G G R +RG GS A P+ P
Sbjct: 805 GYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRG--QRGPTGPRGSRGARGPTGKPG 862
Query: 182 APGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
G S G PPG P E G QG G P GF + PP PG D P
Sbjct: 863 PKGTSGGDGPPGPP------GERGPQGPQG--------PVGFPGPK-GPPGPPGKDGLP 906
Score = 30.8 bits (68), Expect = 1.1
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 117 RSPRRREAPAPSSGTPIAVGPKS---PRWGGPDHSEFADLRSGVTGARAAARRGLGSLRA 173
R + P ++G P A GP P+ G P F A + G+G +
Sbjct: 1239 RGEKGEAGPPGAAGPPGAKGPPGDDGPK-GNPGPVGFPGDPGPPGEPGPAGQDGVGGDKG 1297
Query: 174 ER--PSET-PPAPGVSWGPP-PPGAPVVISVKQEEGKQGRTGRRSHRAA--PP 220
E P + PP P GPP PPG EG+QG G + A PP
Sbjct: 1298 EDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1350
Score = 28.9 bits (63), Expect = 4.2
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 136 GPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGPPPPGAP 195
GP PR GP AD G G+ + G+G PG + P PPG
Sbjct: 1183 GPPGPR--GPQGPNGADGPQGPPGSVGSVG-GVGE---------KGEPGEAGNPGPPGEA 1230
Query: 196 VVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
V K E G++G G P P PG FP
Sbjct: 1231 GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFP 1275
Score = 28.1 bits (61), Expect = 7.1
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 141 RWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAP-GVSWGPPPPGAPVVIS 199
R+GG D S+ + + A+A ++ +LR PP P G++ P P G P
Sbjct: 459 RYGG-DGSKGPTISAQEAQAQAILQQARIALRG------PPGPMGLTGRPGPVGGPGSSG 511
Query: 200 VKQEEGKQGRTGRRSHRAAP-PCGFARTRVCPPTFPGAD 237
K E G G G R + P P G R PGAD
Sbjct: 512 AKGESGDPGPQGPRGVQGPPGPTGKPGKR----GRPGAD 546
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 34.3 bits (77), Expect = 0.099
Identities = 39/119 (32%), Positives = 46/119 (38%), Gaps = 25/119 (21%)
Query: 130 GTPIAVGPKS----PRWGGPDHSEFADLRSGVTGARAAARRG----LGSLRAERPSETPP 181
G P GPK P + G + + A +G G R +RG GS A P+ P
Sbjct: 844 GYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRG--QRGPTGPRGSRGARGPTGKPG 901
Query: 182 APGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
G S G PPG P E G QG G P GF + PP PG D P
Sbjct: 902 PKGTSGGDGPPGPP------GERGPQGPQG--------PVGFPGPK-GPPGPPGKDGLP 945
Score = 30.8 bits (68), Expect = 1.1
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 117 RSPRRREAPAPSSGTPIAVGPKS---PRWGGPDHSEFADLRSGVTGARAAARRGLGSLRA 173
R + P ++G P A GP P+ G P F A + G+G +
Sbjct: 1278 RGEKGEAGPPGAAGPPGAKGPPGDDGPK-GNPGPVGFPGDPGPPGEPGPAGQDGVGGDKG 1336
Query: 174 ER--PSET-PPAPGVSWGPP-PPGAPVVISVKQEEGKQGRTGRRSHRAA--PP 220
E P + PP P GPP PPG EG+QG G + A PP
Sbjct: 1337 EDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1389
Score = 28.9 bits (63), Expect = 4.2
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 136 GPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGPPPPGAP 195
GP PR GP AD G G+ + G+G PG + P PPG
Sbjct: 1222 GPPGPR--GPQGPNGADGPQGPPGSVGSVG-GVGE---------KGEPGEAGNPGPPGEA 1269
Query: 196 VVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
V K E G++G G P P PG FP
Sbjct: 1270 GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFP 1314
Score = 28.1 bits (61), Expect = 7.1
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 141 RWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAP-GVSWGPPPPGAPVVIS 199
R+GG D S+ + + A+A ++ +LR PP P G++ P P G P
Sbjct: 498 RYGG-DGSKGPTISAQEAQAQAILQQARIALRG------PPGPMGLTGRPGPVGGPGSSG 550
Query: 200 VKQEEGKQGRTGRRSHRAAP-PCGFARTRVCPPTFPGAD 237
K E G G G R + P P G R PGAD
Sbjct: 551 AKGESGDPGPQGPRGVQGPPGPTGKPGKR----GRPGAD 585
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 34.3 bits (77), Expect = 0.099
Identities = 46/168 (27%), Positives = 59/168 (35%), Gaps = 40/168 (23%)
Query: 79 VCSIEDWLKSAFQRSICSRHE-------SLVNDFLLRVCDRLSAVRSPRRREAPAPSSGT 131
V +++ L+S F R+ S + L+ DF+ L AVR RR+ P P
Sbjct: 260 VNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFI-EDQGGLEAVRQEMRRQEPLPPPPP 318
Query: 132 PIAVG---PKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETP--PAPGVS 186
P G P+ P GG G +G G+ P TP P P
Sbjct: 319 PSRGGNQLPRPPIVGG---------NKGRSGPLPPVPLGIAP-----PPPTPRGPPPPGR 364
Query: 187 WGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFP 234
GPPPP P TGR PP G + PP P
Sbjct: 365 GGPPPPPPPA-------------TGRSGPLPPPPPGAGGPPMPPPPPP 399
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 34.3 bits (77), Expect = 0.099
Identities = 37/120 (30%), Positives = 46/120 (38%), Gaps = 14/120 (11%)
Query: 128 SSGTPIAVGPK-SPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVS 186
+ GTP A GP SP GP S G G+ G +R + P + P PG
Sbjct: 424 TDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGST-----GPQGIRGQ-PGD-PGVPGFK 476
Query: 187 WGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAP----PCGFARTRVCPPT--FPGADAFP 240
P G P ++ G G G+R R P P G R P FPG+D P
Sbjct: 477 GEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLP 536
Score = 30.0 bits (66), Expect = 1.9
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 23/131 (17%)
Query: 112 RLSAVRSPRRREAPAPSS-----GTPIAVGPKSPRWGGPDHSEFADL-RSGVTGARAAAR 165
+L + +P P P G P ++G P+ D + + +GV G R A
Sbjct: 586 KLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPG 645
Query: 166 R----------GLGSLRAERPSETPPAP----GVSWGPPPP---GAPVVISVKQEEGKQG 208
+ G L ER + PP P G+ P PP G P V + G G
Sbjct: 646 KDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVG 705
Query: 209 RTGRRSHRAAP 219
G R R P
Sbjct: 706 PLGPRGERGNP 716
Score = 28.9 bits (63), Expect = 4.2
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 124 APAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAP 183
+P PS GTP GP + G P A G G + R G+G AE + A
Sbjct: 745 SPGPS-GTPGDTGPPGLQ-GMPGERGIA----GTPGPKGD-RGGIGEKGAEGTAGNDGAR 797
Query: 184 GVSW--GPPPPGAPVVISVKQEEGKQGRTGRRSHRAAP 219
G+ GPP P P K E G +G G R P
Sbjct: 798 GLPGPLGPPGPAGPT--GEKGEPGPRGLVGPPGSRGNP 833
Score = 28.5 bits (62), Expect = 5.5
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 130 GTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAERPSETPPAPGVSWGP 189
G P AVGP PR + E + G+TG G P +PG S P
Sbjct: 699 GDPGAVGPLGPRGERGNPGERGE--PGITGLPGEK----GMAGGHGPDGPKGSPGPSGTP 752
Query: 190 PPPGAPVVISVKQEEGKQGRTGRRSHR 216
G P + + E G G G + R
Sbjct: 753 GDTGPPGLQGMPGERGIAGTPGPKGDR 779
Score = 28.5 bits (62), Expect = 5.5
Identities = 40/152 (26%), Positives = 49/152 (32%), Gaps = 30/152 (19%)
Query: 119 PRRREAPAPSSGTPIAVGPKSPRWG-------GPDHSEFADLRSGVTGARAAAR------ 165
PR P S G P + G P GPD G G + A
Sbjct: 820 PRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQG 879
Query: 166 ----------RGLGSLRAERPSETPPA----PGVSW--GPP-PPGAPVVISVKQEEGKQG 208
G+ L+ R ++ PP PG + GPP P GAP E GK+G
Sbjct: 880 LAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEG 939
Query: 209 RTGRRSHRAAPPCGFARTRVCPPTFPGADAFP 240
G R + R PP PG P
Sbjct: 940 PPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDP 971
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,216,157
Number of Sequences: 37866
Number of extensions: 693457
Number of successful extensions: 6829
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 379
Number of HSP's that attempted gapping in prelim test: 5080
Number of HSP's gapped (non-prelim): 1922
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.