SOX1 25168

Name: SOX1	Sequence: fasta or formatted (391aa)		NCBI GI: 30179900
Description: SRY (sex determining region Y)-box 1		Referenced in: SOX Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 20.5 80 9 C cysteine 0.3 1 1 D aspartate 2.0 8 1 E glutamate 3.3 13 1 F phenylalanine 0.5 2 1 G glycine 16.6 65 15 H histidine 5.6 22 2 I isoleucine 1.3 5 1 K lysine 4.1 16 2 L leucine 5.6 22 2 M methionine 4.6 18 3 N asparagine 2.8 11 1 P proline 8.2 32 2 Q glutamine 3.8 15 1 R arginine 4.3 17 2 S serine 6.9 27 2 T threonine 1.5 6 1 V valine 3.6 14 1 W tryptophan 0.8 3 1 Y tyrosine 3.6 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 SRY (sex determining region Y)-box 1 SOX3 0.470 SRY (sex determining region Y)-box 3 SOX2 0.414 sex-determining region Y-box 2 SOX21 0.233 SRY-box 21 SOX14 0.194 SRY-box 14 SOX15 0.154 SRY-box 15 SOX4 0.153 SRY (sex determining region Y)-box 4 SOX11 0.147 SRY-box 11 SOX17 0.136 SRY-box 17 SOX7 0.134 SRY-box 7 SRY 0.134 sex determining region Y SOX8 0.132 SRY (sex determining region Y)-box 8 SOX10 0.127 SRY (sex determining region Y)-box 10 SOX9 0.127 transcription factor SOX9 SOX18 0.123 SRY-box 18 SOX12 0.122 SRY (sex determining region Y)-box 12 SOX5 0.104 SRY (sex determining region Y)-box 5 isoform c [Homo... SOX5 0.104 SRY (sex determining region Y)-box 5 isoform b [Homo... SOX5 0.104 SRY (sex determining region Y)-box 5 isoform a [Homo... SOX6 0.099 SRY (sex determining region Y)-box 6 isoform 4 [Hom... SOX6 0.099 SRY (sex determining region Y)-box 6 isoform 3 [Hom... SOX6 0.099 SRY (sex determining region Y)-box 6 isoform 1 [Homo... SOX6 0.099 SRY (sex determining region Y)-box 6 isoform 2 [Homo... SOX13 0.096 SRY-box 13 SOX30 0.080 SRY (sex determining region Y)-box 30 isoform b [Homo... SOX30 0.080 SRY (sex determining region Y)-box 30 isoform a [Hom... CIC 0.066 capicua homolog ARID1A 0.050 AT rich interactive domain 1A isoform a ARID1A 0.050 AT rich interactive domain 1A isoform b BBX 0.044 HMG-BOX transcription factor BBX isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.