Search of human proteins with 42789380

Search of human proteins with 42789380

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42789380 selenoprotein T [Homo sapiens]
         (195 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42789380 selenoprotein T [Homo sapiens]                            391   e-109
gi|239755036 PREDICTED: similar to selenoprotein T [Homo sapiens]     275   2e-74
gi|239749531 PREDICTED: similar to selenoprotein T [Homo sapiens]     275   2e-74
gi|239743680 PREDICTED: similar to selenoprotein T [Homo sapiens]     275   2e-74
gi|42822891 hypothetical protein LOC84299 [Homo sapiens]               35   0.031
gi|14211907 zinc finger protein 347 [Homo sapiens]                     28   4.9  
gi|89886475 hypothetical protein LOC163183 [Homo sapiens]              28   6.5  
gi|93277080 hypothetical protein LOC54916 [Homo sapiens]               27   8.4  

>gi|42789380 selenoprotein T [Homo sapiens]
          Length = 195

 Score =  391 bits (1004), Expect = e-109
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMR 60
           MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVS GYRRVFEEYMR
Sbjct: 1   MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMR 60

Query: 61  VISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW 120
           VISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW
Sbjct: 61  VISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW 120

Query: 121 GQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNE 180
           GQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNE
Sbjct: 121 GQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNE 180

Query: 181 MKLNVHMDSIPHHRS 195
           MKLNVHMDSIPHHRS
Sbjct: 181 MKLNVHMDSIPHHRS 195


>gi|239755036 PREDICTED: similar to selenoprotein T [Homo sapiens]
          Length = 137

 Score =  275 bits (703), Expect = 2e-74
 Identities = 133/137 (97%), Positives = 134/137 (97%)

Query: 59  MRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 118
           M V SQ YPDIRIEGENYLPQP+YRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW
Sbjct: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60

Query: 119 QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 178
           QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD
Sbjct: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120

Query: 179 NEMKLNVHMDSIPHHRS 195
           NEMKLNVHMDSIPHHRS
Sbjct: 121 NEMKLNVHMDSIPHHRS 137


>gi|239749531 PREDICTED: similar to selenoprotein T [Homo sapiens]
          Length = 137

 Score =  275 bits (703), Expect = 2e-74
 Identities = 133/137 (97%), Positives = 134/137 (97%)

Query: 59  MRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 118
           M V SQ YPDIRIEGENYLPQP+YRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW
Sbjct: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60

Query: 119 QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 178
           QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD
Sbjct: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120

Query: 179 NEMKLNVHMDSIPHHRS 195
           NEMKLNVHMDSIPHHRS
Sbjct: 121 NEMKLNVHMDSIPHHRS 137


>gi|239743680 PREDICTED: similar to selenoprotein T [Homo sapiens]
          Length = 137

 Score =  275 bits (703), Expect = 2e-74
 Identities = 133/137 (97%), Positives = 134/137 (97%)

Query: 59  MRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 118
           M V SQ YPDIRIEGENYLPQP+YRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW
Sbjct: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60

Query: 119 QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 178
           QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD
Sbjct: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120

Query: 179 NEMKLNVHMDSIPHHRS 195
           NEMKLNVHMDSIPHHRS
Sbjct: 121 NEMKLNVHMDSIPHHRS 137


>gi|42822891 hypothetical protein LOC84299 [Homo sapiens]
          Length = 115

 Score = 35.4 bits (80), Expect = 0.031
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 139 IENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
           IE++   TGAFEI +N   V+SKLE+G  P  + L++ +
Sbjct: 55  IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAI 93


>gi|14211907 zinc finger protein 347 [Homo sapiens]
          Length = 839

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 66  YPDIRIEGENYLPQPIYRHIASF-LSVFKLVLIGLIIVGKDPFAFFGMQA----PSIWQW 120
           Y D+ +E         YR++AS  +S F L +I ++  GK+PF           P  W+W
Sbjct: 33  YRDVMLEN--------YRNLASLGISCFDLSIISMLEQGKEPFTLESQVQIAGNPDGWEW 84


>gi|89886475 hypothetical protein LOC163183 [Homo sapiens]
          Length = 404

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 56  EEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVG 103
           ++  R  S    D+R+EG    P P  R   +FL +  L L+ L++VG
Sbjct: 324 QDKKRQASPHLQDVRLEGNPGAPDPASRQPLTFLLI--LFLLFLLLVG 369


>gi|93277080 hypothetical protein LOC54916 [Homo sapiens]
          Length = 707

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 24  GGVPSKRLK-MQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY 82
           G +P   L+ M Y  G  L+  I +       +E Y+  +++  P +   G  +   P+ 
Sbjct: 440 GDLPGNSLRYMHYCEG--LRPDISLVDQEMMTYEWYLPKMAKHLPGVNFPGNRW--NPVE 495

Query: 83  RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAP--------SIWQWGQENKVYACMMVF 133
             + S +  F L     +   K+ F   G+           S+W WG  +K+    +VF
Sbjct: 496 GILPSGMVTFNLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWPWGSCDKLVPLEIVF 554


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,755,089
Number of Sequences: 37866
Number of extensions: 265997
Number of successful extensions: 611
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 8
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.