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Search of human proteins with 42734381
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42734381 tRNA-yW synthesizing protein 3 homolog isoform 1
[Homo sapiens]
(259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42734381 tRNA-yW synthesizing protein 3 homolog isoform 1 [Ho... 526 e-150
gi|242332558 tRNA-yW synthesizing protein 3 homolog isoform 2 [H... 445 e-125
gi|54607116 leiomodin 3 (fetal) [Homo sapiens] 38 0.010
gi|19923899 coiled-coil domain containing 45 [Homo sapiens] 35 0.050
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 35 0.065
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 33 0.19
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 33 0.19
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 33 0.19
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 33 0.19
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 33 0.19
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 33 0.19
gi|154354990 ankyrin repeat domain 26 [Homo sapiens] 33 0.19
gi|190194355 p90 autoantigen [Homo sapiens] 33 0.25
gi|29789405 hypothetical protein LOC284565 [Homo sapiens] 33 0.25
gi|157266285 hypothetical protein LOC728936 [Homo sapiens] 33 0.25
gi|224589132 hypothetical protein LOC100132406 [Homo sapiens] 33 0.32
gi|7657017 hypothetical protein LOC25832 [Homo sapiens] 32 0.42
gi|239741297 PREDICTED: neuroblastoma breakpoint family, member ... 32 0.55
gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo ... 31 0.94
gi|169162915 PREDICTED: hypothetical protein LOC728841 [Homo sap... 31 0.94
gi|156071420 hypothetical protein LOC728912 [Homo sapiens] 31 0.94
gi|119709825 neuroblastoma breakpoint family, member 11-like [Ho... 31 0.94
gi|5803078 mucosa associated lymphoid tissue lymphoma translocat... 31 1.2
gi|148271104 patched domain containing 1 [Homo sapiens] 31 1.2
gi|41281753 NIMA-related kinase 11 isoform 2 [Homo sapiens] 30 1.6
gi|225637562 NIMA-related kinase 11 isoform 3 [Homo sapiens] 30 1.6
gi|225637560 NIMA-related kinase 11 isoform 1 [Homo sapiens] 30 1.6
gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapi... 30 1.6
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 30 2.1
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 30 2.1
>gi|42734381 tRNA-yW synthesizing protein 3 homolog isoform 1 [Homo
sapiens]
Length = 259
Score = 526 bits (1355), Expect = e-150
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI 60
MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
Sbjct: 1 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI 60
Query: 61 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS 120
NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS
Sbjct: 61 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS 120
Query: 121 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE 180
MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
Sbjct: 121 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE 180
Query: 181 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL 240
NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
Sbjct: 181 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL 240
Query: 241 ENDDDDDLGINVTIFPEDY 259
ENDDDDDLGINVTIFPEDY
Sbjct: 241 ENDDDDDLGINVTIFPEDY 259
>gi|242332558 tRNA-yW synthesizing protein 3 homolog isoform 2 [Homo
sapiens]
Length = 226
Score = 445 bits (1145), Expect = e-125
Identities = 226/259 (87%), Positives = 226/259 (87%), Gaps = 33/259 (12%)
Query: 1 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI 60
MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
Sbjct: 1 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI 60
Query: 61 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS 120
NGFEVQKQNCCWLLVTHKLCVKDDV HS
Sbjct: 61 NGFEVQKQNCCWLLVTHKLCVKDDV---------------------------------HS 87
Query: 121 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE 180
MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
Sbjct: 88 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE 147
Query: 181 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL 240
NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
Sbjct: 148 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL 207
Query: 241 ENDDDDDLGINVTIFPEDY 259
ENDDDDDLGINVTIFPEDY
Sbjct: 208 ENDDDDDLGINVTIFPEDY 226
>gi|54607116 leiomodin 3 (fetal) [Homo sapiens]
Length = 560
Score = 37.7 bits (86), Expect = 0.010
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 161 MVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKK 220
M+ EE + + +K +E + IE+ N+ +KEK N+ + K
Sbjct: 84 MLEEERVPVTFVKSEEKTQEEHEEIEK------------RNKNMAQYLKEKLNNEIVANK 131
Query: 221 KRNPEKTRAQCITKESDEELENDDDDDLG 249
+ + + Q T E DEE E+DDDDD G
Sbjct: 132 RESKGSSNIQ-ETDEEDEEEEDDDDDDEG 159
>gi|19923899 coiled-coil domain containing 45 [Homo sapiens]
Length = 821
Score = 35.4 bits (80), Expect = 0.050
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 160 LMVTEEYIDFLLNVANQKMEENKKR-------IERFYNCLQHALERETMTNLHPKIK--E 210
L + ++ + L N A +K +E ++R +E +Y Q +L E ++ H ++K E
Sbjct: 700 LNIQKQRLRDLRNYAKEKRDEQRRRHQDELDSMENYYKD-QFSLLAEAISQEHQELKARE 758
Query: 211 KNNSSYIHKKKRNPEKTRAQCITKESDEELENDDD 245
K+ + +HK KR + I + D +NDDD
Sbjct: 759 KSQAQTLHKVKRELRSKMEKEIQQLQDMITQNDDD 793
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 35.0 bits (79), Expect = 0.065
Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 89 LKKANGDATLKFEPFVLHVQCRQLQDAQILHSMAIDSG-FRNSGITVGKRGKTMLAVRST 147
L +ANG A K + ++ + +L +A S +D N +++G+ + ++ ++
Sbjct: 362 LYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEK 421
Query: 148 HGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALE----RETMTN 203
H + + H K++ T+E + LLN KM K++I+ + + A E R+
Sbjct: 422 HVKDEQIEHWKKIVKTQEELKELLN----KMVNLKEKIKELHQQYKEASEVKPPRDITAE 477
Query: 204 LHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEELENDDDDDL 248
K K ++ ++ K E Q +E +ELE + D+
Sbjct: 478 FLVKSKHRDLTALC---KEYDELAETQGKLEEKLQELEANPPSDV 519
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 155 SHKGKLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIK--EKN 212
SH +L VTEE I+ L +EE+++ E+ + +ERE T + P ++ E+
Sbjct: 523 SHFHELRVTEEEINVLKQDLQNALEESERNKEKVRELEEKLVEREKGTVIKPPVEEYEEM 582
Query: 213 NSSYIHK-KKRNPEKTRAQCITKESDEEL 240
SSY + N EK +E+ EE+
Sbjct: 583 KSSYCSVIENMNKEKAFLFEKYQEAQEEI 611
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 155 SHKGKLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIK--EKN 212
SH +L VTEE I+ L +EE+++ E+ + +ERE T + P ++ E+
Sbjct: 512 SHFHELRVTEEEINVLKQDLQNALEESERNKEKVRELEEKLVEREKGTVIKPPVEEYEEM 571
Query: 213 NSSYIHK-KKRNPEKTRAQCITKESDEEL 240
SSY + N EK +E+ EE+
Sbjct: 572 KSSYCSVIENMNKEKAFLFEKYQEAQEEI 600
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 155 SHKGKLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIK--EKN 212
SH +L VTEE I+ L +EE+++ E+ + +ERE T + P ++ E+
Sbjct: 491 SHFHELRVTEEEINVLKQDLQNALEESERNKEKVRELEEKLVEREKGTVIKPPVEEYEEM 550
Query: 213 NSSYIHK-KKRNPEKTRAQCITKESDEEL 240
SSY + N EK +E+ EE+
Sbjct: 551 KSSYCSVIENMNKEKAFLFEKYQEAQEEI 579
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 155 SHKGKLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIK--EKN 212
SH +L VTEE I+ L +EE+++ E+ + +ERE T + P ++ E+
Sbjct: 520 SHFHELRVTEEEINVLKQDLQNALEESERNKEKVRELEEKLVEREKGTVIKPPVEEYEEM 579
Query: 213 NSSYIHK-KKRNPEKTRAQCITKESDEEL 240
SSY + N EK +E+ EE+
Sbjct: 580 KSSYCSVIENMNKEKAFLFEKYQEAQEEI 608
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 155 SHKGKLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIK--EKN 212
SH +L VTEE I+ L +EE+++ E+ + +ERE T + P ++ E+
Sbjct: 520 SHFHELRVTEEEINVLKQDLQNALEESERNKEKVRELEEKLVEREKGTVIKPPVEEYEEM 579
Query: 213 NSSYIHK-KKRNPEKTRAQCITKESDEEL 240
SSY + N EK +E+ EE+
Sbjct: 580 KSSYCSVIENMNKEKAFLFEKYQEAQEEI 608
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 155 SHKGKLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIK--EKN 212
SH +L VTEE I+ L +EE+++ E+ + +ERE T + P ++ E+
Sbjct: 520 SHFHELRVTEEEINVLKQDLQNALEESERNKEKVRELEEKLVEREKGTVIKPPVEEYEEM 579
Query: 213 NSSYIHK-KKRNPEKTRAQCITKESDEEL 240
SSY + N EK +E+ EE+
Sbjct: 580 KSSYCSVIENMNKEKAFLFEKYQEAQEEI 608
>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
Length = 1710
Score = 33.5 bits (75), Expect = 0.19
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 135 GKRGKTMLAVRSTHGLEVPLSHKGK------LMVTEEYIDFLLNVAN--QKMEENKKRIE 186
G R M + T + +P++H L T E D + N A + ++ +K
Sbjct: 465 GSRNFKMAKLEDTRNVGMPVAHMESPERYLHLKPTIEMKDSVPNKAGGMKDVQTSKAAEH 524
Query: 187 RFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEELENDDDD 246
+ ERE N P+++E+ KK RN E + I + ++ E+DDDD
Sbjct: 525 DLEVASEEEQEREGSENNQPQVEEER------KKHRNNEMEVSANIHDGATDDAEDDDDD 578
Query: 247 D 247
D
Sbjct: 579 D 579
>gi|190194355 p90 autoantigen [Homo sapiens]
Length = 905
Score = 33.1 bits (74), Expect = 0.25
Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 79 LCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQ---DAQILHSMAIDSGFRNSGITVG 135
L K+ + L + A + + + +C++ Q +A+ L SM + +N ++V
Sbjct: 633 LASKESRLQDLLETKALALAQADRLIAQHRCQRTQAETEARTLASMLREVERKNEELSVL 692
Query: 136 KRGKTMLAVRSTHGLEVPLSHKGKL--------MVTEEYIDFLLNVANQKMEENKKRIER 187
+ + + + R+ +E H KL ++T+ Y++ L N+ E+ K ++
Sbjct: 693 LKAQQVESERAQSDIEHLFQHNRKLESVAEEHEILTKSYMELLQR--NESTEKKNKDLQI 750
Query: 188 FYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEELEN 242
+ L +E T+ L+ +KE+N S ++ ++ Q + + +L N
Sbjct: 751 TCDSLNKQIE--TVKKLNESLKEQNEKSIAQLIEKEEQRKEVQNQLVDREHKLAN 803
>gi|29789405 hypothetical protein LOC284565 [Homo sapiens]
Length = 670
Score = 33.1 bits (74), Expect = 0.25
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 28/123 (22%)
Query: 157 KGKLMVTEEYIDFLLNVANQ----KMEENKKRIE--RFYNCLQHALERETMTNLHPKIKE 210
K K ++ I F+L Q K+ E K+ E R Y L HA ERE +T L K++E
Sbjct: 57 KYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERE-LTQLREKLRE 115
Query: 211 KNNSSYIHKKKRN-------PEKTRAQCITKESDE--------------ELENDDDDDLG 249
++S + P+K++ Q + ++ E E +NDDD+D+
Sbjct: 116 GRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLTQHLVQKLSPENDNDDDEDVQ 175
Query: 250 INV 252
+ V
Sbjct: 176 VEV 178
>gi|157266285 hypothetical protein LOC728936 [Homo sapiens]
Length = 670
Score = 33.1 bits (74), Expect = 0.25
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 28/123 (22%)
Query: 157 KGKLMVTEEYIDFLLNVANQ----KMEENKKRIE--RFYNCLQHALERETMTNLHPKIKE 210
K K ++ I F+L Q K+ E K+ E R Y L HA ERE +T L K++E
Sbjct: 57 KYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERE-LTQLREKLRE 115
Query: 211 KNNSSYIHKKKRN-------PEKTRAQCITKESDE--------------ELENDDDDDLG 249
++S + P+K++ Q + ++ E E +NDDD+D+
Sbjct: 116 GRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLTQHLVQKLSPENDNDDDEDVQ 175
Query: 250 INV 252
+ V
Sbjct: 176 VEV 178
>gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]
Length = 3628
Score = 32.7 bits (73), Expect = 0.32
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 28/123 (22%)
Query: 157 KGKLMVTEEYIDFLLNVANQ----KMEENKKRIE--RFYNCLQHALERETMTNLHPKIKE 210
K K ++ I F+L Q K+ E K+ E R Y L HA ERE +T L K++E
Sbjct: 328 KYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERE-LTQLKEKLRE 386
Query: 211 KNNSSYIHKKKRN-------PEKTRAQCITKESDE--------------ELENDDDDDLG 249
++S + P+K++ Q + ++ E E +NDDD+D+
Sbjct: 387 GRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQ 446
Query: 250 INV 252
+ V
Sbjct: 447 VEV 449
>gi|7657017 hypothetical protein LOC25832 [Homo sapiens]
Length = 921
Score = 32.3 bits (72), Expect = 0.42
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 24/100 (24%)
Query: 176 QKMEENKKRIE--RFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRN-------PEK 226
+K+ E K+ E R Y L HA ERE +T L K++E ++S + P+K
Sbjct: 11 EKLAEQLKQAEELRQYKVLVHAQERE-LTQLREKLREGRDASRSLNEHLQALLTPDEPDK 69
Query: 227 TRAQCITKESDE--------------ELENDDDDDLGINV 252
++ Q + ++ E E +NDDD+D+ + V
Sbjct: 70 SQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEV 109
>gi|239741297 PREDICTED: neuroblastoma breakpoint family, member 9
[Homo sapiens]
Length = 299
Score = 32.0 bits (71), Expect = 0.55
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 171 LNVANQKMEENKKRIE--RFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRN----- 223
L +K+ E K+ E R Y L H+ ERE +T L K++E ++S +
Sbjct: 75 LQFKEEKLAEQLKQAEELRQYKVLVHSQERE-LTQLREKLREGRDASRSLNEHLQALLTP 133
Query: 224 --PEKTRAQCITKESDE--------------ELENDDDDDLGINV 252
P+K++ Q + ++ E E +NDDD+D+ + V
Sbjct: 134 DEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEV 178
>gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo
sapiens]
Length = 4621
Score = 31.2 bits (69), Expect = 0.94
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 24/100 (24%)
Query: 176 QKMEENKKRIE--RFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRN-------PEK 226
+K+ E K+ E R Y L HA ERE +T L K++E ++S + P+K
Sbjct: 351 EKLAEQLKQAEELRQYKVLVHAQERE-LTQLREKLREGRDASRSLNEHLQALLTPDEPDK 409
Query: 227 TRAQCITKESDE--------------ELENDDDDDLGINV 252
++ Q + ++ E E +NDDD+D+ + +
Sbjct: 410 SQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEL 449
>gi|169162915 PREDICTED: hypothetical protein LOC728841 [Homo
sapiens]
Length = 3815
Score = 31.2 bits (69), Expect = 0.94
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 24/100 (24%)
Query: 176 QKMEENKKRIE--RFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRN-------PEK 226
+K+ E K+ E R Y L HA ERE +T L K++E ++S + P+K
Sbjct: 100 EKLAEQLKQAEELRQYKVLVHAQERE-LTQLREKLREGRDASRSLNEHLQALLTPDEPDK 158
Query: 227 TRAQCITKESDE--------------ELENDDDDDLGINV 252
++ Q + ++ E E +NDDD+D+ + +
Sbjct: 159 SQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEL 198
>gi|156071420 hypothetical protein LOC728912 [Homo sapiens]
Length = 790
Score = 31.2 bits (69), Expect = 0.94
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 24/100 (24%)
Query: 176 QKMEENKKRIE--RFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRN-------PEK 226
+K+ E K+ E R Y L H+ ERE +T L K++E ++S + P+K
Sbjct: 276 EKLAEQLKQAEELRQYKVLVHSQERE-LTQLREKLREGRDASRSLNEHLQALLTPDEPDK 334
Query: 227 TRAQCITKESDE--------------ELENDDDDDLGINV 252
++ Q + ++ E E +NDDD+D+ + V
Sbjct: 335 SQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEV 374
>gi|119709825 neuroblastoma breakpoint family, member 11-like [Homo
sapiens]
Length = 790
Score = 31.2 bits (69), Expect = 0.94
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 24/100 (24%)
Query: 176 QKMEENKKRIE--RFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRN-------PEK 226
+K+ E K+ E R Y L H+ ERE +T L K++E ++S + P+K
Sbjct: 276 EKLAEQLKQAEELRQYKVLVHSQERE-LTQLREKLREGRDASRSLNEHLQALLTPDEPDK 334
Query: 227 TRAQCITKESDE--------------ELENDDDDDLGINV 252
++ Q + ++ E E +NDDD+D+ + V
Sbjct: 335 SQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEV 374
>gi|5803078 mucosa associated lymphoid tissue lymphoma translocation
protein 1 isoform a [Homo sapiens]
Length = 824
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 151 EVPLSHKGKLMVTEEYID------FLLNVANQKMEENKKRIERFYNCLQHALE--RETMT 202
E+PL+H+ K + Y+D + +V N + ++ K++E A+E + +
Sbjct: 264 ELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIGRTDEAVECTEDELN 323
Query: 203 NL-HPKIKEKNNSSYIHKKK 221
NL HP KE+ + K K
Sbjct: 324 NLGHPDNKEQTTDQPLAKDK 343
>gi|148271104 patched domain containing 1 [Homo sapiens]
Length = 888
Score = 30.8 bits (68), Expect = 1.2
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 20/143 (13%)
Query: 18 ADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGIN-------GFEVQKQNC 70
+DL G +V Q NM DQ T IL L + GF +
Sbjct: 85 SDLQTPGRYGRVIVTSFQKANMLDQHHTDL-----ILKLHAAVTKIQVPRPGFNYTFAHI 139
Query: 71 CWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHSMAIDSGFRNS 130
C +L K C+ DD++ L++ F + L+D + A+ +G +
Sbjct: 140 C-ILNNDKTCIVDDIVHVLEELKNARATNRTNFAITYPITHLKDGR-----AVYNGHQLG 193
Query: 131 GITVGK--RGKTMLAVRSTHGLE 151
G+TV R K+ A++ T+ L+
Sbjct: 194 GVTVHSKDRVKSAEAIQLTYYLQ 216
>gi|41281753 NIMA-related kinase 11 isoform 2 [Homo sapiens]
Length = 470
Score = 30.4 bits (67), Expect = 1.6
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 159 KLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIH 218
KL +E L + +K EEN KR++ + ++ ++ LH EK + +
Sbjct: 349 KLQAADEKARKLKKIVEEKYEENSKRMQELRS---RNFQQLSVDVLH----EKTHLKGME 401
Query: 219 KKKRNPEKTRAQCITKESDEE 239
+K+ PE R C ++ DEE
Sbjct: 402 EKEEQPE-GRLSCSPQDEDEE 421
>gi|225637562 NIMA-related kinase 11 isoform 3 [Homo sapiens]
Length = 599
Score = 30.4 bits (67), Expect = 1.6
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 159 KLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIH 218
KL +E L + +K EEN KR++ + ++ ++ LH EK + +
Sbjct: 349 KLQAADEKARKLKKIVEEKYEENSKRMQELRS---RNFQQLSVDVLH----EKTHLKGME 401
Query: 219 KKKRNPEKTRAQCITKESDEE 239
+K+ PE R C ++ DEE
Sbjct: 402 EKEEQPE-GRLSCSPQDEDEE 421
>gi|225637560 NIMA-related kinase 11 isoform 1 [Homo sapiens]
Length = 645
Score = 30.4 bits (67), Expect = 1.6
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 159 KLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIH 218
KL +E L + +K EEN KR++ + ++ ++ LH EK + +
Sbjct: 349 KLQAADEKARKLKKIVEEKYEENSKRMQELRS---RNFQQLSVDVLH----EKTHLKGME 401
Query: 219 KKKRNPEKTRAQCITKESDEE 239
+K+ PE R C ++ DEE
Sbjct: 402 EKEEQPE-GRLSCSPQDEDEE 421
>gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo
sapiens]
Length = 875
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 207 KIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL----ENDDDDDLGINVTIFPE 257
KIK K+ + +++ E + Q K+ +E ++DDDDD G + + P+
Sbjct: 743 KIKAKHREKRLKEREARREANKRQAKAKDEEEAFLDWSDDDDDDDDGFDPSTLPD 797
>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
Length = 1113
Score = 30.0 bits (66), Expect = 2.1
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 135 GKRGKTMLAV---RSTHGLEVPLSHK--GKLMVTEEYI--DFLLNVANQKMEENKKRIER 187
GK+ +ML + + VPLSH GK E ++ +F ++ +K +++
Sbjct: 878 GKKSLSMLHYIRGAAPKDIPVPLSHSTNGKSKPWEPFVAEEFAHQFHESVLQSTQKALQK 937
Query: 188 FYNC---LQHALERETMTNLHPKIKEKNNSSYI----HKKKRNPEKTR----AQCITKES 236
L + T++H I E +SS H ++ P R Q + ++S
Sbjct: 938 HKGSVAVLSAEQNHKVDTSVHYNIPELQSSSRAPPPQHNGQQEPPTARKGPPTQELDRDS 997
Query: 237 DEELENDDDD 246
+EE E DD+D
Sbjct: 998 EEEEEEDDED 1007
>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
Length = 1217
Score = 30.0 bits (66), Expect = 2.1
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 135 GKRGKTMLAV---RSTHGLEVPLSHK--GKLMVTEEYI--DFLLNVANQKMEENKKRIER 187
GK+ +ML + + VPLSH GK E ++ +F ++ +K +++
Sbjct: 982 GKKSLSMLHYIRGAAPKDIPVPLSHSTNGKSKPWEPFVAEEFAHQFHESVLQSTQKALQK 1041
Query: 188 FYNC---LQHALERETMTNLHPKIKEKNNSSYI----HKKKRNPEKTR----AQCITKES 236
L + T++H I E +SS H ++ P R Q + ++S
Sbjct: 1042 HKGSVAVLSAEQNHKVDTSVHYNIPELQSSSRAPPPQHNGQQEPPTARKGPPTQELDRDS 1101
Query: 237 DEELENDDDD 246
+EE E DD+D
Sbjct: 1102 EEEEEEDDED 1111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,275,603
Number of Sequences: 37866
Number of extensions: 391212
Number of successful extensions: 2162
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2112
Number of HSP's gapped (non-prelim): 106
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.