CNOT1 28045

Name: CNOT1	Sequence: fasta or formatted (2376aa)		NCBI GI: 42716275
Description: CCR4-NOT transcription complex, subunit 1 isoform a		Referenced in: RNA Polymerase and General Transcription Factors Small RNAs in RNA Processing
Other entries for this name: alt prot [1551aa] CCR4-NOT transcription complex, subunit 1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 189 3 C cysteine 1.7 41 2 D aspartate 4.5 108 2 E glutamate 5.6 133 2 F phenylalanine 4.3 102 2 G glycine 4.8 115 2 H histidine 3.2 77 2 I isoleucine 5.7 135 2 K lysine 4.9 117 2 L leucine 12.0 286 3 M methionine 3.1 74 2 N asparagine 4.5 107 2 P proline 6.0 142 3 Q glutamine 6.1 144 2 R arginine 4.6 110 2 S serine 6.1 146 4 T threonine 5.5 130 5 V valine 5.7 135 3 W tryptophan 0.8 19 1 Y tyrosine 2.8 66 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 CCR4-NOT transcription complex, subunit 1 isoform a ... CNOT1 0.618 CCR4-NOT transcription complex, subunit 1 isoform b ... ZBTB4 0.004 zinc finger and BTB domain containing 4 ZBTB4 0.004 zinc finger and BTB domain containing 4 HUWE1 0.003 HECT, UBA and WWE domain containing 1 CASKIN1 0.003 CASK interacting protein 1 TMPRSS13 0.003 transmembrane protease, serine 13 MUPCDH 0.003 mucin and cadherin-like isoform 1 ZNF469 0.003 zinc finger protein 469 PRRC1 0.003 proline-rich coiled-coil 1 CNOT3 0.002 CCR4-NOT transcription complex, subunit 3 ELN 0.002 elastin isoform e precursor ELN 0.002 elastin isoform d precursor ELN 0.002 elastin isoform c precursor ELN 0.002 elastin isoform b precursor ELN 0.002 elastin isoform a precursor CUGBP1 0.002 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... RXRB 0.002 retinoid X receptor, beta CCDC141 0.002 coiled-coil domain containing 141 LOC730474 0.002 PREDICTED: hypothetical protein, partial GLI2 0.002 GLI-Kruppel family member GLI2 FLJ22184 0.002 PREDICTED: hypothetical protein FLJ22184 LOC730474 0.002 PREDICTED: hypothetical protein HCN2 0.002 hyperpolarization activated cyclic nucleotide-gated... FMN1 0.002 formin 1 NFASC 0.002 neurofascin isoform 1 precursor BAT2 0.002 HLA-B associated transcript-2 AFF2 0.002 fragile X mental retardation 2 SFPQ 0.002 splicing factor proline/glutamine rich (polypyrimidin... GPR112 0.002 G-protein coupled receptor 112 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.