Guide to the Human Genome
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Search of human proteins with 41872577

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41872577 raft-linking protein [Homo sapiens]
         (578 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41872577 raft-linking protein [Homo sapiens]                      1166   0.0  
gi|188528644 raftlin family member 2 [Homo sapiens]                   234   2e-61
gi|18426913 drebrin 1 isoform b [Homo sapiens]                         41   0.003
gi|18426915 drebrin 1 isoform a [Homo sapiens]                         41   0.003
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        40   0.006
gi|145699133 KPL2 protein isoform 1 [Homo sapiens]                     39   0.017
gi|195947401 doublesex and mab-3 related transcription factor 2 ...    37   0.038
gi|5729806 doublesex and mab-3 related transcription factor 2 is...    37   0.038
gi|153945850 doublesex and mab-3 related transcription factor 2 ...    37   0.038
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]     37   0.050
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    37   0.065
gi|24497526 homeobox B1 [Homo sapiens]                                 37   0.065
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik...    36   0.11 
gi|71725360 zinc finger protein 609 [Homo sapiens]                     36   0.11 
gi|34878777 ring finger protein 20 [Homo sapiens]                      35   0.14 
gi|88196790 coiled-coil domain containing 88 [Homo sapiens]            35   0.14 
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]    35   0.14 
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]    35   0.14 
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]    35   0.14 
gi|191252814 RIMS binding protein 3B [Homo sapiens]                    35   0.19 
gi|191252806 RIMS binding protein 3C [Homo sapiens]                    35   0.19 
gi|212276104 leucine rich repeat (in FLII) interacting protein 1...    35   0.19 
gi|212276096 leucine rich repeat (in FLII) interacting protein 1...    35   0.19 
gi|212276070 leucine rich repeat (in FLII) interacting protein 1...    35   0.19 
gi|153792195 DKFZP434H0735 protein [Homo sapiens]                      35   0.19 
gi|170650674 phosphodiesterase 6A [Homo sapiens]                       35   0.25 
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         35   0.25 
gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens]             35   0.25 
gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens]             35   0.25 
gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens]             35   0.25 

>gi|41872577 raft-linking protein [Homo sapiens]
          Length = 578

 Score = 1166 bits (3017), Expect = 0.0
 Identities = 578/578 (100%), Positives = 578/578 (100%)

Query: 1   MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA 60
           MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA
Sbjct: 1   MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA 60

Query: 61  SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNE 120
           SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNE
Sbjct: 61  SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNE 120

Query: 121 GYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVST 180
           GYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVST
Sbjct: 121 GYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVST 180

Query: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSP 240
           ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSP
Sbjct: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSP 240

Query: 241 SGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTI 300
           SGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTI
Sbjct: 241 SGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTI 300

Query: 301 PLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVS 360
           PLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVS
Sbjct: 301 PLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVS 360

Query: 361 TEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGS 420
           TEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGS
Sbjct: 361 TEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGS 420

Query: 421 VSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKN 480
           VSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKN
Sbjct: 421 VSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKN 480

Query: 481 LEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGP 540
           LEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGP
Sbjct: 481 LEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGP 540

Query: 541 ASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN 578
           ASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN
Sbjct: 541 ASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN 578


>gi|188528644 raftlin family member 2 [Homo sapiens]
          Length = 501

 Score =  234 bits (596), Expect = 2e-61
 Identities = 159/479 (33%), Positives = 248/479 (51%), Gaps = 41/479 (8%)

Query: 1   MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA 60
           MGCGL KLE  D+  PG I+STLKRPQVETK + +YEY  L+FT L A+  P    +++ 
Sbjct: 1   MGCGLRKLEDPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFT-LQASSNP--EVIKIN 57

Query: 61  SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILI--KKTDRSQKTDLH 118
           S+ D+  ++   Y +G+ + A+HP +QP  +R+  P  +++R +L+  K + ++      
Sbjct: 58  SILDIVTKVENYYLKGYIVGAIHPVIQPVGQRKHLPASYLYRVVLLRLKLSPKNSAAPSG 117

Query: 119 NEGYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPV 178
                L ++ C             E I+KI  AA +G+KFVG I Q++S         P 
Sbjct: 118 QRRPRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYS---------PS 168

Query: 179 STANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPS 238
              N T       N  GD  S+ + + G+ + C     R+ +    SG   E  + ++  
Sbjct: 169 KFCNGT-------NHDGDIESMLHVRHGSDENC-----RSWNEGTLSGQSSESGIEEELH 216

Query: 239 SPSGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPV 298
             SG+    +      SK+  G  S+             +++T+FN          Y   
Sbjct: 217 HESGQYQMEQNGSPTSSKSRKGEASDN------------KLYTVFNAFDDDSTSWAYQEG 264

Query: 299 TIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNA-VFYLGIVNDSLHGLTDGVFIFE 357
            + + V++ G  +S LDA+WLE  + ++++G  L+++ VF+     + L    +G FI+E
Sbjct: 265 ILSMKVTRKGSVISTLDADWLELTTFYYKQGLSLIDSFVFWETSKGEHLPKSLEGFFIYE 324

Query: 358 AV-STEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTT 416
              S     + +G DAIVVEQWTV+EG E++TDY PLL++LA +GW LT VLPTPV++  
Sbjct: 325 EEGSGVPGSSRKGNDAIVVEQWTVIEGCEIKTDYGPLLHTLAEFGWLLTSVLPTPVLRHD 384

Query: 417 SEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAE 475
           SEG+++TKQIVFLQRP +     +   K   R  + E  N+   +S G L     Q AE
Sbjct: 385 SEGNLATKQIVFLQRPVMWNSAAQTPDKKASRHIKGEDKNKATSRSIG-LDTTSSQPAE 442


>gi|18426913 drebrin 1 isoform b [Homo sapiens]
          Length = 651

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 150 EAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGD 209
           E+A Q +    V P    +     ++  + T  +T D   A N      SL +  PG G+
Sbjct: 427 ESAEQAVLAAPVEPATADATEIHDAADTIETDTATADTTVANNVPPAATSLIDLWPGNGE 486

Query: 210 VCSAPAGRNQSPEPSSGPR---GEVPL----AKQPSSPSGEGDGGELSPQGVSKTLDGPE 262
             S   G  ++P P SG      EVPL    A +P  P+GEG    L+   + +      
Sbjct: 487 GASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEP-PATF 545

Query: 263 SNPLEVHEEPLS 274
            +P EV  EPL+
Sbjct: 546 CDPEEVEGEPLA 557


>gi|18426915 drebrin 1 isoform a [Homo sapiens]
          Length = 649

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 150 EAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGD 209
           E+A Q +    V P    +     ++  + T  +T D   A N      SL +  PG G+
Sbjct: 425 ESAEQAVLAAPVEPATADATEIHDAADTIETDTATADTTVANNVPPAATSLIDLWPGNGE 484

Query: 210 VCSAPAGRNQSPEPSSGPR---GEVPL----AKQPSSPSGEGDGGELSPQGVSKTLDGPE 262
             S   G  ++P P SG      EVPL    A +P  P+GEG    L+   + +      
Sbjct: 485 GASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEP-PATF 543

Query: 263 SNPLEVHEEPLS 274
            +P EV  EPL+
Sbjct: 544 CDPEEVEGEPLA 555


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)

Query: 136  TDQKLIPEFIKKIQEAASQGLK--FVGVIPQYHSSVNSAGSSAPV------------STA 181
            +  +L P+ ++K   +++Q +    +  +P+  S   S+ +S+P             S +
Sbjct: 1382 SSSELSPDAVEKAGMSSNQSISSPVLDAVPRTPSRERSSSASSPEMKDGLPRTPSRRSRS 1441

Query: 182  NSTEDARDAKNARGDHASLENEKPGTGDVCSAPA-GRNQ---SPEPSSGPRGEVPLAKQP 237
             S+   RD       H SL    PG  D+   P+ GR++   SPEP + P+   P ++ P
Sbjct: 1442 GSSPGLRDGSGTPSRH-SLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRSRSP 1500

Query: 238  SSP 240
            SSP
Sbjct: 1501 SSP 1503


>gi|145699133 KPL2 protein isoform 1 [Homo sapiens]
          Length = 1822

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 213  APAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLEVHEEP 272
            AP G+ +S +   G +GE  L K+  SP G+  GG++  +      D  +++P+ +  +P
Sbjct: 948  APHGKQESLQEGKGKKGETAL-KRKGSPKGKSSGGKVPVK--KSPADSTDTSPVAIVPQP 1004

Query: 273  LSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGML 332
                 E +   N+P          P  +PL +    + +     N ++ +  H R+    
Sbjct: 1005 PKPGSEEWVYVNEP---------VPEEMPLFLVPYWELIENSYINTIKTVLRHLREDQHT 1055

Query: 333  VNAVFY 338
            V A  Y
Sbjct: 1056 VLAYLY 1061


>gi|195947401 doublesex and mab-3 related transcription factor 2
           isoform 1 [Homo sapiens]
          Length = 226

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 173 GSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVP 232
           G S P +  +  +D  D      D    + E+ G G+   A  G    PE   GP+   P
Sbjct: 36  GPSPPPADGDCEDDEDD------DGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPP 89

Query: 233 LAKQPSSPSGEGD-------GGELSPQGVSKT 257
           LA Q +SP+G G        GG   P+ +S+T
Sbjct: 90  LAPQ-ASPAGTGPRERCTPAGGGAEPRKLSRT 120


>gi|5729806 doublesex and mab-3 related transcription factor 2
           isoform 1 [Homo sapiens]
          Length = 226

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 173 GSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVP 232
           G S P +  +  +D  D      D    + E+ G G+   A  G    PE   GP+   P
Sbjct: 36  GPSPPPADGDCEDDEDD------DGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPP 89

Query: 233 LAKQPSSPSGEGD-------GGELSPQGVSKT 257
           LA Q +SP+G G        GG   P+ +S+T
Sbjct: 90  LAPQ-ASPAGTGPRERCTPAGGGAEPRKLSRT 120


>gi|153945850 doublesex and mab-3 related transcription factor 2
           isoform 2 [Homo sapiens]
          Length = 561

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 173 GSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVP 232
           G S P +  +  +D  D      D    + E+ G G+   A  G    PE   GP+   P
Sbjct: 36  GPSPPPADGDCEDDEDD------DGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPP 89

Query: 233 LAKQPSSPSGEGD-------GGELSPQGVSKT 257
           LA Q +SP+G G        GG   P+ +S+T
Sbjct: 90  LAPQ-ASPAGTGPRERCTPAGGGAEPRKLSRT 120


>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
          Length = 569

 Score = 37.0 bits (84), Expect = 0.050
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 440 KKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQ 499
           KKE + + +  +EE    +M++ + +   R+K + E   K+ ED+     D G    G+ 
Sbjct: 382 KKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDE---DGGQKPEGEP 438

Query: 500 QEGGVSEEMKGPVQED 515
           Q+   +EE  G V+E+
Sbjct: 439 QQDPGTEETYGEVEEE 454


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 13/148 (8%)

Query: 439 KKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGD-----MGN 493
           KK++ + Q +  RE+ H ++  +   +    +  + EE E + E++  K G+      G 
Sbjct: 703 KKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGE 762

Query: 494 CVSGQ-QQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRALV---G 549
            V G+ ++E G  ++ +   +E+KGE+        G G E E    G        V    
Sbjct: 763 EVEGEREKEEGERKKEERAGKEEKGEEEGDQ----GEGEEEETEGRGEEKEEGGEVEGGE 818

Query: 550 ICTGHSNPGEDARDGDAEEVRELGTVEE 577
           +  G     E+  +G+ EE    G  EE
Sbjct: 819 VEEGKGEREEEEEEGEGEEEEGEGEEEE 846



 Score = 36.2 bits (82), Expect = 0.085
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 15/142 (10%)

Query: 448 RFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQQEG----- 502
           R   E    ++ R  K +    +  Q E  E+  E +  +  + G    G+ +EG     
Sbjct: 768 REKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGERE 827

Query: 503 -------GVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRALVGICTGHS 555
                  G  EE +G  +E +GE+    G     G EGE  + G         G      
Sbjct: 828 EEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGE---GEEEEGE 884

Query: 556 NPGEDARDGDAEEVRELGTVEE 577
             GE+  +G+ EE    G  EE
Sbjct: 885 GEGEEEGEGEGEEEEGEGEGEE 906


>gi|24497526 homeobox B1 [Homo sapiens]
          Length = 301

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 168 SVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGP 227
           S +SA +S P S+A +  D+  ++   G   S    +  +G     P      P PSS P
Sbjct: 23  SAHSAPTSFPPSSAQAV-DSYASEGRYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAP 81

Query: 228 RGEVPLAKQPS-SPS-------GEGDGGELSPQGVSKTLDG 260
            G  P A  PS  PS        EGDGG   P      L G
Sbjct: 82  SGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGG 122


>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
           protein 6 [Homo sapiens]
          Length = 724

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 436 QKIKKKESKFQWRFSREEMHNRQ--MRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGN 493
           +KI+K+E K  WR   E+MH+++  +R+ + K+  R +++  E E+ + +Q  K  +   
Sbjct: 550 EKIRKQEEK-MWR-QEEKMHDQEEKIREQEEKV-WRQEEKIREQEEKIREQEEKIREQEE 606

Query: 494 CVSGQQQEGGVSEEMKGPVQEDKGEQ 519
               Q+++ G  EE     +E   EQ
Sbjct: 607 MTQEQEEKMGEQEEKMCEQEEKMQEQ 632


>gi|71725360 zinc finger protein 609 [Homo sapiens]
          Length = 1411

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 4/137 (2%)

Query: 170 NSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRG 229
           N+ G  A ++   S + A+ +++  G     EN    +    S   G     +P  G   
Sbjct: 130 NAGGLVAAIAPKGSEKAAKASRSVAGSKKEKENSSSKSKKERSEGVGTCSEKDP--GVLQ 187

Query: 230 EVPLAKQPSSPSGEG--DGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPK 287
            VPL  +     G    D G + P G      G   NPL    EP  G+ E   L     
Sbjct: 188 PVPLGGRGGQYDGSAGVDTGAVEPLGSIAIEPGAALNPLGTKPEPEEGENECRLLKKVKS 247

Query: 288 SHQKCRQYYPVTIPLHV 304
              +     P  +P+H+
Sbjct: 248 EKMESPVSTPAVLPIHL 264


>gi|34878777 ring finger protein 20 [Homo sapiens]
          Length = 975

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 440 KKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQ 499
           K++ + + R  RE+   R+  + K K   R+KQ+ +E+EK  E  S+K  + G    G++
Sbjct: 563 KRDEEERERERREKEREREREREKEKEREREKQKLKESEK--ERDSAKDKEKGKHDDGRK 620

Query: 500 QEGGVSEEMK 509
           +E  + +++K
Sbjct: 621 KEAEIIKQLK 630


>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
          Length = 1476

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 16/145 (11%)

Query: 148 IQEAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARG------DHASLE 201
           +Q+A   G + + + P    SV  A +  P +  +  ++A     A        D +  E
Sbjct: 519 VQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQAAAMDPQASDWSPQE 578

Query: 202 NEKPGTGDVCSAPAGRN---QSPEPSSGPRGEVPLAKQPSSPSGEGDG-----GELSPQG 253
           +  P         AGR    QSP   + P+G     + P    GE +G     GEL P+ 
Sbjct: 579 SGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEA 638

Query: 254 VSKTLDGPESNPLEVHEEPLSGKME 278
                +GPE  P     EP S ++E
Sbjct: 639 WGLRQEGPEHKP--GPSEPSSVQLE 661


>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
          Length = 170

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 209 DVCSAPA-GRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLE 267
           +   APA  R  +PEP++ P G     ++P  P+G G+ GE +  G  +    P + P E
Sbjct: 49  EATGAPAPSRPCAPEPAASPAGP----EEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAE 104

Query: 268 VHEEPLSGKME 278
             E+ +  + E
Sbjct: 105 AEEQAVEARQE 115


>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
          Length = 177

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 209 DVCSAPA-GRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLE 267
           +   APA  R  +PEP++ P G     ++P  P+G G+ GE +  G  +    P + P E
Sbjct: 49  EATGAPAPSRPCAPEPAASPAGP----EEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAE 104

Query: 268 VHEEPLSGKME 278
             E+ +  + E
Sbjct: 105 AEEQAVEARQE 115


>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
          Length = 204

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 209 DVCSAPA-GRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLE 267
           +   APA  R  +PEP++ P G     ++P  P+G G+ GE +  G  +    P + P E
Sbjct: 49  EATGAPAPSRPCAPEPAASPAGP----EEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAE 104

Query: 268 VHEEPLSGKME 278
             E+ +  + E
Sbjct: 105 AEEQAVEARQE 115


>gi|191252814 RIMS binding protein 3B [Homo sapiens]
          Length = 1639

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 159 VGVIPQYHSSVNSAGSSAP---VSTANSTED------ARDAKNARG-DHASLENEKPGTG 208
           VGV  +    V+SA SS+P   +ST  S+ D      +R   + R    AS   E+P + 
Sbjct: 256 VGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSP 315

Query: 209 DVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSP 251
           D  S P  R  SP PS  P    P A +  S    G+G E  P
Sbjct: 316 DT-STPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQP 357


>gi|191252806 RIMS binding protein 3C [Homo sapiens]
          Length = 1639

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 159 VGVIPQYHSSVNSAGSSAP---VSTANSTED------ARDAKNARG-DHASLENEKPGTG 208
           VGV  +    V+SA SS+P   +ST  S+ D      +R   + R    AS   E+P + 
Sbjct: 256 VGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSP 315

Query: 209 DVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSP 251
           D  S P  R  SP PS  P    P A +  S    G+G E  P
Sbjct: 316 DT-STPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQP 357


>gi|212276104 leucine rich repeat (in FLII) interacting protein 1
           isoform 5 [Homo sapiens]
          Length = 752

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGP 227
           A+STE  RD     G+   L +EKP   +V  +PAG   + + ++GP
Sbjct: 433 AHSTEVGRDHNEEEGEETGLRDEKPIKTEVPGSPAGTEGNCQEATGP 479


>gi|212276096 leucine rich repeat (in FLII) interacting protein 1
           isoform 3 [Homo sapiens]
          Length = 808

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGP 227
           A+STE  RD     G+   L +EKP   +V  +PAG   + + ++GP
Sbjct: 489 AHSTEVGRDHNEEEGEETGLRDEKPIKTEVPGSPAGTEGNCQEATGP 535


>gi|212276070 leucine rich repeat (in FLII) interacting protein 1
           isoform 4 [Homo sapiens]
          Length = 784

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGP 227
           A+STE  RD     G+   L +EKP   +V  +PAG   + + ++GP
Sbjct: 465 AHSTEVGRDHNEEEGEETGLRDEKPIKTEVPGSPAGTEGNCQEATGP 511


>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
          Length = 1639

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 159 VGVIPQYHSSVNSAGSSAP---VSTANSTED------ARDAKNARG-DHASLENEKPGTG 208
           VGV  +    V+SA SS+P   +ST  S+ D      +R   + R    AS   E+P + 
Sbjct: 256 VGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSP 315

Query: 209 DVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSP 251
           D  S P  R  SP PS  P    P A +  S    G+G E  P
Sbjct: 316 DT-STPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQP 357


>gi|170650674 phosphodiesterase 6A [Homo sapiens]
          Length = 860

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 11/143 (7%)

Query: 247 GELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSK 306
           GE+ P    +T DG E N  +V +  L GK +I  + N P  H          +P +V++
Sbjct: 297 GEVPPYSGPRTPDGREINFYKVIDYILHGKEDIKVIPNPPPDHWALVS----GLPAYVAQ 352

Query: 307 NGQTVSGLDA---NWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVSTED 363
           NG   + ++A   ++     +   + G ++  V  + IVN       + V +    + +D
Sbjct: 353 NGLICNIMNAPAEDFFAFQKEPLDESGWMIKNVLSMPIVNKK----EEIVGVATFYNRKD 408

Query: 364 SKTIQGYDAIVVEQWTVLEGVEV 386
            K     D  ++E  T   G  V
Sbjct: 409 GKPFDEMDETLMESLTQFLGWSV 431


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 167  SSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSG 226
            SS +S+ SS+  S+++S+  +  + ++    +S  +    T +  S  +    +P P++G
Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692

Query: 227  PRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKME 278
            P  +  L  + +  +G+      SP G       P++ P +   +PL  K +
Sbjct: 2693 PSAQAALPTKATKQAGKARPSAHSP-GKKTPAPQPQAPPPQ-PTQPLQPKAQ 2742



 Score = 30.8 bits (68), Expect = 3.6
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 171  SAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGE 230
            +AGS  P + A        AK A+GD A+   E   T +V S P     S  P S     
Sbjct: 2319 TAGSEEPGAKARGRGRKPSAK-AKGDRAATLEEGNPTDEVPSTPLALEPSSTPGSKKSPP 2377

Query: 231  VPLAKQPSSPSGEGDGGELSP 251
             P+ K+  +P       + SP
Sbjct: 2378 EPVDKRAKAPKARPAPPQPSP 2398


>gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens]
          Length = 1118

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)

Query: 438 IKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSG 497
           ++K + + + R  ++E    ++RK + +  A+ KQ+AEENE   + Q +K          
Sbjct: 473 MEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQQKAK---------- 522

Query: 498 QQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGV 529
           ++ E   SE+ K   +EDK      G  + GV
Sbjct: 523 EEMEKKESEQAK---KEDKETSAKRGKEITGV 551


>gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens]
          Length = 1118

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)

Query: 438 IKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSG 497
           ++K + + + R  ++E    ++RK + +  A+ KQ+AEENE   + Q +K          
Sbjct: 473 MEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQQKAK---------- 522

Query: 498 QQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGV 529
           ++ E   SE+ K   +EDK      G  + GV
Sbjct: 523 EEMEKKESEQAK---KEDKETSAKRGKEITGV 551


>gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens]
          Length = 1118

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)

Query: 438 IKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSG 497
           ++K + + + R  ++E    ++RK + +  A+ KQ+AEENE   + Q +K          
Sbjct: 473 MEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQQKAK---------- 522

Query: 498 QQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGV 529
           ++ E   SE+ K   +EDK      G  + GV
Sbjct: 523 EEMEKKESEQAK---KEDKETSAKRGKEITGV 551


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,599,247
Number of Sequences: 37866
Number of extensions: 1299091
Number of successful extensions: 5904
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 5435
Number of HSP's gapped (non-prelim): 635
length of query: 578
length of database: 18,247,518
effective HSP length: 108
effective length of query: 470
effective length of database: 14,157,990
effective search space: 6654255300
effective search space used: 6654255300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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