BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|41872577 raft-linking protein [Homo sapiens] (578 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|41872577 raft-linking protein [Homo sapiens] 1166 0.0 gi|188528644 raftlin family member 2 [Homo sapiens] 234 2e-61 gi|18426913 drebrin 1 isoform b [Homo sapiens] 41 0.003 gi|18426915 drebrin 1 isoform a [Homo sapiens] 41 0.003 gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 40 0.006 gi|145699133 KPL2 protein isoform 1 [Homo sapiens] 39 0.017 gi|195947401 doublesex and mab-3 related transcription factor 2 ... 37 0.038 gi|5729806 doublesex and mab-3 related transcription factor 2 is... 37 0.038 gi|153945850 doublesex and mab-3 related transcription factor 2 ... 37 0.038 gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 37 0.050 gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 37 0.065 gi|24497526 homeobox B1 [Homo sapiens] 37 0.065 gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 36 0.11 gi|71725360 zinc finger protein 609 [Homo sapiens] 36 0.11 gi|34878777 ring finger protein 20 [Homo sapiens] 35 0.14 gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 35 0.14 gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 35 0.14 gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 35 0.14 gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 35 0.14 gi|191252814 RIMS binding protein 3B [Homo sapiens] 35 0.19 gi|191252806 RIMS binding protein 3C [Homo sapiens] 35 0.19 gi|212276104 leucine rich repeat (in FLII) interacting protein 1... 35 0.19 gi|212276096 leucine rich repeat (in FLII) interacting protein 1... 35 0.19 gi|212276070 leucine rich repeat (in FLII) interacting protein 1... 35 0.19 gi|153792195 DKFZP434H0735 protein [Homo sapiens] 35 0.19 gi|170650674 phosphodiesterase 6A [Homo sapiens] 35 0.25 gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 35 0.25 gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens] 35 0.25 gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens] 35 0.25 gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens] 35 0.25 >gi|41872577 raft-linking protein [Homo sapiens] Length = 578 Score = 1166 bits (3017), Expect = 0.0 Identities = 578/578 (100%), Positives = 578/578 (100%) Query: 1 MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA 60 MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA Sbjct: 1 MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA 60 Query: 61 SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNE 120 SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNE Sbjct: 61 SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNE 120 Query: 121 GYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVST 180 GYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVST Sbjct: 121 GYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVST 180 Query: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSP 240 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSP Sbjct: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSP 240 Query: 241 SGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTI 300 SGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTI Sbjct: 241 SGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTI 300 Query: 301 PLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVS 360 PLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVS Sbjct: 301 PLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVS 360 Query: 361 TEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGS 420 TEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGS Sbjct: 361 TEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGS 420 Query: 421 VSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKN 480 VSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKN Sbjct: 421 VSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKN 480 Query: 481 LEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGP 540 LEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGP Sbjct: 481 LEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGP 540 Query: 541 ASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN 578 ASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN Sbjct: 541 ASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN 578 >gi|188528644 raftlin family member 2 [Homo sapiens] Length = 501 Score = 234 bits (596), Expect = 2e-61 Identities = 159/479 (33%), Positives = 248/479 (51%), Gaps = 41/479 (8%) Query: 1 MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA 60 MGCGL KLE D+ PG I+STLKRPQVETK + +YEY L+FT L A+ P +++ Sbjct: 1 MGCGLRKLEDPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFT-LQASSNP--EVIKIN 57 Query: 61 SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILI--KKTDRSQKTDLH 118 S+ D+ ++ Y +G+ + A+HP +QP +R+ P +++R +L+ K + ++ Sbjct: 58 SILDIVTKVENYYLKGYIVGAIHPVIQPVGQRKHLPASYLYRVVLLRLKLSPKNSAAPSG 117 Query: 119 NEGYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPV 178 L ++ C E I+KI AA +G+KFVG I Q++S P Sbjct: 118 QRRPRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYS---------PS 168 Query: 179 STANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPS 238 N T N GD S+ + + G+ + C R+ + SG E + ++ Sbjct: 169 KFCNGT-------NHDGDIESMLHVRHGSDENC-----RSWNEGTLSGQSSESGIEEELH 216 Query: 239 SPSGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPV 298 SG+ + SK+ G S+ +++T+FN Y Sbjct: 217 HESGQYQMEQNGSPTSSKSRKGEASDN------------KLYTVFNAFDDDSTSWAYQEG 264 Query: 299 TIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNA-VFYLGIVNDSLHGLTDGVFIFE 357 + + V++ G +S LDA+WLE + ++++G L+++ VF+ + L +G FI+E Sbjct: 265 ILSMKVTRKGSVISTLDADWLELTTFYYKQGLSLIDSFVFWETSKGEHLPKSLEGFFIYE 324 Query: 358 AV-STEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTT 416 S + +G DAIVVEQWTV+EG E++TDY PLL++LA +GW LT VLPTPV++ Sbjct: 325 EEGSGVPGSSRKGNDAIVVEQWTVIEGCEIKTDYGPLLHTLAEFGWLLTSVLPTPVLRHD 384 Query: 417 SEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAE 475 SEG+++TKQIVFLQRP + + K R + E N+ +S G L Q AE Sbjct: 385 SEGNLATKQIVFLQRPVMWNSAAQTPDKKASRHIKGEDKNKATSRSIG-LDTTSSQPAE 442 >gi|18426913 drebrin 1 isoform b [Homo sapiens] Length = 651 Score = 40.8 bits (94), Expect = 0.003 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 150 EAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGD 209 E+A Q + V P + ++ + T +T D A N SL + PG G+ Sbjct: 427 ESAEQAVLAAPVEPATADATEIHDAADTIETDTATADTTVANNVPPAATSLIDLWPGNGE 486 Query: 210 VCSAPAGRNQSPEPSSGPR---GEVPL----AKQPSSPSGEGDGGELSPQGVSKTLDGPE 262 S G ++P P SG EVPL A +P P+GEG L+ + + Sbjct: 487 GASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEP-PATF 545 Query: 263 SNPLEVHEEPLS 274 +P EV EPL+ Sbjct: 546 CDPEEVEGEPLA 557 >gi|18426915 drebrin 1 isoform a [Homo sapiens] Length = 649 Score = 40.8 bits (94), Expect = 0.003 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 150 EAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGD 209 E+A Q + V P + ++ + T +T D A N SL + PG G+ Sbjct: 425 ESAEQAVLAAPVEPATADATEIHDAADTIETDTATADTTVANNVPPAATSLIDLWPGNGE 484 Query: 210 VCSAPAGRNQSPEPSSGPR---GEVPL----AKQPSSPSGEGDGGELSPQGVSKTLDGPE 262 S G ++P P SG EVPL A +P P+GEG L+ + + Sbjct: 485 GASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEP-PATF 543 Query: 263 SNPLEVHEEPLS 274 +P EV EPL+ Sbjct: 544 CDPEEVEGEPLA 555 >gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] Length = 2752 Score = 40.0 bits (92), Expect = 0.006 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%) Query: 136 TDQKLIPEFIKKIQEAASQGLK--FVGVIPQYHSSVNSAGSSAPV------------STA 181 + +L P+ ++K +++Q + + +P+ S S+ +S+P S + Sbjct: 1382 SSSELSPDAVEKAGMSSNQSISSPVLDAVPRTPSRERSSSASSPEMKDGLPRTPSRRSRS 1441 Query: 182 NSTEDARDAKNARGDHASLENEKPGTGDVCSAPA-GRNQ---SPEPSSGPRGEVPLAKQP 237 S+ RD H SL PG D+ P+ GR++ SPEP + P+ P ++ P Sbjct: 1442 GSSPGLRDGSGTPSRH-SLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRSRSP 1500 Query: 238 SSP 240 SSP Sbjct: 1501 SSP 1503 >gi|145699133 KPL2 protein isoform 1 [Homo sapiens] Length = 1822 Score = 38.5 bits (88), Expect = 0.017 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 12/126 (9%) Query: 213 APAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLEVHEEP 272 AP G+ +S + G +GE L K+ SP G+ GG++ + D +++P+ + +P Sbjct: 948 APHGKQESLQEGKGKKGETAL-KRKGSPKGKSSGGKVPVK--KSPADSTDTSPVAIVPQP 1004 Query: 273 LSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGML 332 E + N+P P +PL + + + N ++ + H R+ Sbjct: 1005 PKPGSEEWVYVNEP---------VPEEMPLFLVPYWELIENSYINTIKTVLRHLREDQHT 1055 Query: 333 VNAVFY 338 V A Y Sbjct: 1056 VLAYLY 1061 >gi|195947401 doublesex and mab-3 related transcription factor 2 isoform 1 [Homo sapiens] Length = 226 Score = 37.4 bits (85), Expect = 0.038 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%) Query: 173 GSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVP 232 G S P + + +D D D + E+ G G+ A G PE GP+ P Sbjct: 36 GPSPPPADGDCEDDEDD------DGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPP 89 Query: 233 LAKQPSSPSGEGD-------GGELSPQGVSKT 257 LA Q +SP+G G GG P+ +S+T Sbjct: 90 LAPQ-ASPAGTGPRERCTPAGGGAEPRKLSRT 120 >gi|5729806 doublesex and mab-3 related transcription factor 2 isoform 1 [Homo sapiens] Length = 226 Score = 37.4 bits (85), Expect = 0.038 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%) Query: 173 GSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVP 232 G S P + + +D D D + E+ G G+ A G PE GP+ P Sbjct: 36 GPSPPPADGDCEDDEDD------DGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPP 89 Query: 233 LAKQPSSPSGEGD-------GGELSPQGVSKT 257 LA Q +SP+G G GG P+ +S+T Sbjct: 90 LAPQ-ASPAGTGPRERCTPAGGGAEPRKLSRT 120 >gi|153945850 doublesex and mab-3 related transcription factor 2 isoform 2 [Homo sapiens] Length = 561 Score = 37.4 bits (85), Expect = 0.038 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%) Query: 173 GSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVP 232 G S P + + +D D D + E+ G G+ A G PE GP+ P Sbjct: 36 GPSPPPADGDCEDDEDD------DGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPP 89 Query: 233 LAKQPSSPSGEGD-------GGELSPQGVSKT 257 LA Q +SP+G G GG P+ +S+T Sbjct: 90 LAPQ-ASPAGTGPRERCTPAGGGAEPRKLSRT 120 >gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] Length = 569 Score = 37.0 bits (84), Expect = 0.050 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 440 KKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQ 499 KKE + + + +EE +M++ + + R+K + E K+ ED+ D G G+ Sbjct: 382 KKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDE---DGGQKPEGEP 438 Query: 500 QEGGVSEEMKGPVQED 515 Q+ +EE G V+E+ Sbjct: 439 QQDPGTEETYGEVEEE 454 >gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo sapiens] Length = 1152 Score = 36.6 bits (83), Expect = 0.065 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 13/148 (8%) Query: 439 KKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGD-----MGN 493 KK++ + Q + RE+ H ++ + + + + EE E + E++ K G+ G Sbjct: 703 KKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGE 762 Query: 494 CVSGQ-QQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRALV---G 549 V G+ ++E G ++ + +E+KGE+ G G E E G V Sbjct: 763 EVEGEREKEEGERKKEERAGKEEKGEEEGDQ----GEGEEEETEGRGEEKEEGGEVEGGE 818 Query: 550 ICTGHSNPGEDARDGDAEEVRELGTVEE 577 + G E+ +G+ EE G EE Sbjct: 819 VEEGKGEREEEEEEGEGEEEEGEGEEEE 846 Score = 36.2 bits (82), Expect = 0.085 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 15/142 (10%) Query: 448 RFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQQEG----- 502 R E ++ R K + + Q E E+ E + + + G G+ +EG Sbjct: 768 REKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGERE 827 Query: 503 -------GVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRALVGICTGHS 555 G EE +G +E +GE+ G G EGE + G G Sbjct: 828 EEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGE---GEEEEGE 884 Query: 556 NPGEDARDGDAEEVRELGTVEE 577 GE+ +G+ EE G EE Sbjct: 885 GEGEEEGEGEGEEEEGEGEGEE 906 >gi|24497526 homeobox B1 [Homo sapiens] Length = 301 Score = 36.6 bits (83), Expect = 0.065 Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 9/101 (8%) Query: 168 SVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGP 227 S +SA +S P S+A + D+ ++ G S + +G P P PSS P Sbjct: 23 SAHSAPTSFPPSSAQAV-DSYASEGRYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAP 81 Query: 228 RGEVPLAKQPS-SPS-------GEGDGGELSPQGVSKTLDG 260 G P A PS PS EGDGG P L G Sbjct: 82 SGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGG 122 >gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like protein 6 [Homo sapiens] Length = 724 Score = 35.8 bits (81), Expect = 0.11 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%) Query: 436 QKIKKKESKFQWRFSREEMHNRQ--MRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGN 493 +KI+K+E K WR E+MH+++ +R+ + K+ R +++ E E+ + +Q K + Sbjct: 550 EKIRKQEEK-MWR-QEEKMHDQEEKIREQEEKV-WRQEEKIREQEEKIREQEEKIREQEE 606 Query: 494 CVSGQQQEGGVSEEMKGPVQEDKGEQ 519 Q+++ G EE +E EQ Sbjct: 607 MTQEQEEKMGEQEEKMCEQEEKMQEQ 632 >gi|71725360 zinc finger protein 609 [Homo sapiens] Length = 1411 Score = 35.8 bits (81), Expect = 0.11 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 4/137 (2%) Query: 170 NSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRG 229 N+ G A ++ S + A+ +++ G EN + S G +P G Sbjct: 130 NAGGLVAAIAPKGSEKAAKASRSVAGSKKEKENSSSKSKKERSEGVGTCSEKDP--GVLQ 187 Query: 230 EVPLAKQPSSPSGEG--DGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPK 287 VPL + G D G + P G G NPL EP G+ E L Sbjct: 188 PVPLGGRGGQYDGSAGVDTGAVEPLGSIAIEPGAALNPLGTKPEPEEGENECRLLKKVKS 247 Query: 288 SHQKCRQYYPVTIPLHV 304 + P +P+H+ Sbjct: 248 EKMESPVSTPAVLPIHL 264 >gi|34878777 ring finger protein 20 [Homo sapiens] Length = 975 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 440 KKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQ 499 K++ + + R RE+ R+ + K K R+KQ+ +E+EK E S+K + G G++ Sbjct: 563 KRDEEERERERREKEREREREREKEKEREREKQKLKESEK--ERDSAKDKEKGKHDDGRK 620 Query: 500 QEGGVSEEMK 509 +E + +++K Sbjct: 621 KEAEIIKQLK 630 >gi|88196790 coiled-coil domain containing 88 [Homo sapiens] Length = 1476 Score = 35.4 bits (80), Expect = 0.14 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 16/145 (11%) Query: 148 IQEAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARG------DHASLE 201 +Q+A G + + + P SV A + P + + ++A A D + E Sbjct: 519 VQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQAAAMDPQASDWSPQE 578 Query: 202 NEKPGTGDVCSAPAGRN---QSPEPSSGPRGEVPLAKQPSSPSGEGDG-----GELSPQG 253 + P AGR QSP + P+G + P GE +G GEL P+ Sbjct: 579 SGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEA 638 Query: 254 VSKTLDGPESNPLEVHEEPLSGKME 278 +GPE P EP S ++E Sbjct: 639 WGLRQEGPEHKP--GPSEPSSVQLE 661 >gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] Length = 170 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 209 DVCSAPA-GRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLE 267 + APA R +PEP++ P G ++P P+G G+ GE + G + P + P E Sbjct: 49 EATGAPAPSRPCAPEPAASPAGP----EEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAE 104 Query: 268 VHEEPLSGKME 278 E+ + + E Sbjct: 105 AEEQAVEARQE 115 >gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] Length = 177 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 209 DVCSAPA-GRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLE 267 + APA R +PEP++ P G ++P P+G G+ GE + G + P + P E Sbjct: 49 EATGAPAPSRPCAPEPAASPAGP----EEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAE 104 Query: 268 VHEEPLSGKME 278 E+ + + E Sbjct: 105 AEEQAVEARQE 115 >gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] Length = 204 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 209 DVCSAPA-GRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLE 267 + APA R +PEP++ P G ++P P+G G+ GE + G + P + P E Sbjct: 49 EATGAPAPSRPCAPEPAASPAGP----EEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAE 104 Query: 268 VHEEPLSGKME 278 E+ + + E Sbjct: 105 AEEQAVEARQE 115 >gi|191252814 RIMS binding protein 3B [Homo sapiens] Length = 1639 Score = 35.0 bits (79), Expect = 0.19 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 11/103 (10%) Query: 159 VGVIPQYHSSVNSAGSSAP---VSTANSTED------ARDAKNARG-DHASLENEKPGTG 208 VGV + V+SA SS+P +ST S+ D +R + R AS E+P + Sbjct: 256 VGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSP 315 Query: 209 DVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSP 251 D S P R SP PS P P A + S G+G E P Sbjct: 316 DT-STPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQP 357 >gi|191252806 RIMS binding protein 3C [Homo sapiens] Length = 1639 Score = 35.0 bits (79), Expect = 0.19 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 11/103 (10%) Query: 159 VGVIPQYHSSVNSAGSSAP---VSTANSTED------ARDAKNARG-DHASLENEKPGTG 208 VGV + V+SA SS+P +ST S+ D +R + R AS E+P + Sbjct: 256 VGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSP 315 Query: 209 DVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSP 251 D S P R SP PS P P A + S G+G E P Sbjct: 316 DT-STPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQP 357 >gi|212276104 leucine rich repeat (in FLII) interacting protein 1 isoform 5 [Homo sapiens] Length = 752 Score = 35.0 bits (79), Expect = 0.19 Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGP 227 A+STE RD G+ L +EKP +V +PAG + + ++GP Sbjct: 433 AHSTEVGRDHNEEEGEETGLRDEKPIKTEVPGSPAGTEGNCQEATGP 479 >gi|212276096 leucine rich repeat (in FLII) interacting protein 1 isoform 3 [Homo sapiens] Length = 808 Score = 35.0 bits (79), Expect = 0.19 Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGP 227 A+STE RD G+ L +EKP +V +PAG + + ++GP Sbjct: 489 AHSTEVGRDHNEEEGEETGLRDEKPIKTEVPGSPAGTEGNCQEATGP 535 >gi|212276070 leucine rich repeat (in FLII) interacting protein 1 isoform 4 [Homo sapiens] Length = 784 Score = 35.0 bits (79), Expect = 0.19 Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 181 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGP 227 A+STE RD G+ L +EKP +V +PAG + + ++GP Sbjct: 465 AHSTEVGRDHNEEEGEETGLRDEKPIKTEVPGSPAGTEGNCQEATGP 511 >gi|153792195 DKFZP434H0735 protein [Homo sapiens] Length = 1639 Score = 35.0 bits (79), Expect = 0.19 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 11/103 (10%) Query: 159 VGVIPQYHSSVNSAGSSAP---VSTANSTED------ARDAKNARG-DHASLENEKPGTG 208 VGV + V+SA SS+P +ST S+ D +R + R AS E+P + Sbjct: 256 VGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSP 315 Query: 209 DVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSP 251 D S P R SP PS P P A + S G+G E P Sbjct: 316 DT-STPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQP 357 >gi|170650674 phosphodiesterase 6A [Homo sapiens] Length = 860 Score = 34.7 bits (78), Expect = 0.25 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 11/143 (7%) Query: 247 GELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSK 306 GE+ P +T DG E N +V + L GK +I + N P H +P +V++ Sbjct: 297 GEVPPYSGPRTPDGREINFYKVIDYILHGKEDIKVIPNPPPDHWALVS----GLPAYVAQ 352 Query: 307 NGQTVSGLDA---NWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVSTED 363 NG + ++A ++ + + G ++ V + IVN + V + + +D Sbjct: 353 NGLICNIMNAPAEDFFAFQKEPLDESGWMIKNVLSMPIVNKK----EEIVGVATFYNRKD 408 Query: 364 SKTIQGYDAIVVEQWTVLEGVEV 386 K D ++E T G V Sbjct: 409 GKPFDEMDETLMESLTQFLGWSV 431 >gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] Length = 2968 Score = 34.7 bits (78), Expect = 0.25 Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 167 SSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSG 226 SS +S+ SS+ S+++S+ + + ++ +S + T + S + +P P++G Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692 Query: 227 PRGEVPLAKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKME 278 P + L + + +G+ SP G P++ P + +PL K + Sbjct: 2693 PSAQAALPTKATKQAGKARPSAHSP-GKKTPAPQPQAPPPQ-PTQPLQPKAQ 2742 Score = 30.8 bits (68), Expect = 3.6 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Query: 171 SAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGE 230 +AGS P + A AK A+GD A+ E T +V S P S P S Sbjct: 2319 TAGSEEPGAKARGRGRKPSAK-AKGDRAATLEEGNPTDEVPSTPLALEPSSTPGSKKSPP 2377 Query: 231 VPLAKQPSSPSGEGDGGELSP 251 P+ K+ +P + SP Sbjct: 2378 EPVDKRAKAPKARPAPPQPSP 2398 >gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens] Length = 1118 Score = 34.7 bits (78), Expect = 0.25 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%) Query: 438 IKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSG 497 ++K + + + R ++E ++RK + + A+ KQ+AEENE + Q +K Sbjct: 473 MEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQQKAK---------- 522 Query: 498 QQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGV 529 ++ E SE+ K +EDK G + GV Sbjct: 523 EEMEKKESEQAK---KEDKETSAKRGKEITGV 551 >gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens] Length = 1118 Score = 34.7 bits (78), Expect = 0.25 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%) Query: 438 IKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSG 497 ++K + + + R ++E ++RK + + A+ KQ+AEENE + Q +K Sbjct: 473 MEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQQKAK---------- 522 Query: 498 QQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGV 529 ++ E SE+ K +EDK G + GV Sbjct: 523 EEMEKKESEQAK---KEDKETSAKRGKEITGV 551 >gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens] Length = 1118 Score = 34.7 bits (78), Expect = 0.25 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%) Query: 438 IKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSG 497 ++K + + + R ++E ++RK + + A+ KQ+AEENE + Q +K Sbjct: 473 MEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQQKAK---------- 522 Query: 498 QQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGV 529 ++ E SE+ K +EDK G + GV Sbjct: 523 EEMEKKESEQAK---KEDKETSAKRGKEITGV 551 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.311 0.130 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,599,247 Number of Sequences: 37866 Number of extensions: 1299091 Number of successful extensions: 5904 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 185 Number of HSP's that attempted gapping in prelim test: 5435 Number of HSP's gapped (non-prelim): 635 length of query: 578 length of database: 18,247,518 effective HSP length: 108 effective length of query: 470 effective length of database: 14,157,990 effective search space: 6654255300 effective search space used: 6654255300 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.