Guide to the Human Genome
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Name: RASSF6 Sequence: fasta or formatted (369aa) NCBI GI: 41393610
Description:

Ras association (RalGDS/AF-6) domain family 6 isoform b

Referenced in:

Ras

Other entries for this name:
alt prot [337aa] Ras association (RalGDS/AF-6) domain family 6 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         17           2
 C cysteine            0.3          1           1
 D aspartate           4.9         18           2
 E glutamate           9.5         35           3
 F phenylalanine       4.9         18           1
 G glycine             2.7         10           1
 H histidine           2.4          9           1
 I isoleucine          7.9         29           2
 K lysine              9.2         34           2
 L leucine             9.2         34           2
 M methionine          3.8         14           2
 N asparagine          4.9         18           1
 P proline             4.1         15           1
 Q glutamine           4.9         18           1
 R arginine            6.2         23           2
 S serine              7.9         29           2
 T threonine           5.4         20           2
 V valine              3.3         12           1
 W tryptophan          1.1          4           1
 Y tyrosine            3.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association (RalGDS/AF-6) domain family 6 isofor... 
RASSF6                0.908   Ras association (RalGDS/AF-6) domain family 6 isofor...
RASSF2                0.288   Ras association domain family 2 
RASSF2                0.288   Ras association domain family 2 
RASSF4                0.241   Ras association domain family 4 
RASSF1                0.048   Ras association domain family 1 isoform D 
RASSF1                0.048   Ras association domain family 1 isoform C 
RASSF1                0.048   Ras association domain family 1 isoform A 
RASSF1                0.048   Ras association domain family 1 isoform B 
RASSF5                0.044   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.044   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF3                0.023   Ras association (RalGDS/AF-6) domain family member 3...
MLLT4                 0.016   myeloid/lymphoid or mixed-lineage leukemia (trithora...
IGF1R                 0.014   insulin-like growth factor 1 receptor precursor [Homo...
MLLT4                 0.013   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.013   myeloid/lymphoid or mixed-lineage leukemia (trithora...
RASSF5                0.011   Ras association (RalGDS/AF-6) domain family 5 isofor...
KIF6                  0.011   kinesin family member 6 
NOP14                 0.011   probable nucleolar complex protein 14 
LOC100292618          0.010   PREDICTED: hypothetical protein 
LOC100290170          0.010   PREDICTED: hypothetical protein XP_002347382 
LOC100289646          0.010   PREDICTED: hypothetical protein XP_002343220 
QKI                   0.010   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.010   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.010   quaking homolog, KH domain RNA binding isoform HQK-6...
QKI                   0.010   quaking homolog, KH domain RNA binding isoform HQK-5...
KIAA1009              0.010   KIAA1009 protein 
KIF3B                 0.010   kinesin family member 3B 
ANKRD11               0.008   ankyrin repeat domain 11 
RP1L1                 0.008   retinitis pigmentosa 1-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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