Guide to the Human Genome
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Name: RASSF1 Sequence: fasta or formatted (340aa) NCBI GI: 20149588
Description:

Ras association domain family 1 isoform A

Referenced in:

Ras
Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [189aa] Ras association domain family 1 isoform B
alt prot [270aa] Ras association domain family 1 isoform C
alt prot [344aa] Ras association domain family 1 isoform D
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         25           1
 C cysteine            3.5         12           2
 D aspartate           5.0         17           2
 E glutamate           7.6         26           4
 F phenylalanine       3.5         12           1
 G glycine             6.5         22           1
 H histidine           2.9         10           1
 I isoleucine          3.2         11           1
 K lysine              5.6         19           2
 L leucine            11.8         40           2
 M methionine          0.9          3           1
 N asparagine          2.9         10           1
 P proline             6.2         21           2
 Q glutamine           4.4         15           1
 R arginine           10.6         36           3
 S serine              5.0         17           2
 T threonine           3.5         12           1
 V valine              5.9         20           2
 W tryptophan          1.5          5           1
 Y tyrosine            2.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association domain family 1 isoform A 
RASSF1                0.987   Ras association domain family 1 isoform D 
RASSF1                0.616   Ras association domain family 1 isoform C 
RASSF1                0.521   Ras association domain family 1 isoform B 
RASSF5                0.369   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.300   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.230   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF3                0.210   Ras association (RalGDS/AF-6) domain family member 3...
RASSF4                0.055   Ras association domain family 4 
RASSF2                0.055   Ras association domain family 2 
RASSF2                0.055   Ras association domain family 2 
RASSF6                0.050   Ras association (RalGDS/AF-6) domain family 6 isofor...
RASSF6                0.050   Ras association (RalGDS/AF-6) domain family 6 isofor...
PRKCH                 0.046   protein kinase C, eta 
RASGRP1               0.046   RAS guanyl releasing protein 1 isoform b 
RASGRP1               0.046   RAS guanyl releasing protein 1 isoform a 
PRKCI                 0.046   protein kinase C, iota 
PRKCZ                 0.044   protein kinase C, zeta isoform 1 
PRKD3                 0.044   protein kinase D3 
PRKCG                 0.043   protein kinase C, gamma 
RASGRP3               0.043   RAS guanyl releasing protein 3 (calcium and DAG-reg...
RASGRP3               0.043   RAS guanyl releasing protein 3 (calcium and DAG-regu...
RASGRP3               0.043   RAS guanyl releasing protein 3 (calcium and DAG-regul...
RASGRP4               0.041   RAS guanyl releasing protein 4 isoform a 
PRKCD                 0.041   protein kinase C, delta 
PRKCD                 0.041   protein kinase C, delta 
RASGRP4               0.041   RAS guanyl releasing protein 4 isoform g 
RASGRP4               0.041   RAS guanyl releasing protein 4 isoform f 
RASGRP4               0.041   RAS guanyl releasing protein 4 isoform e 
RASGRP4               0.041   RAS guanyl releasing protein 4 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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