LMX1A 27700

Name: LMX1A	Sequence: fasta or formatted (133aa)		NCBI GI: 41281895
Description: LIM homeobox transcription factor 1, alpha isoform b		Referenced in: Homeobox and Related Proteins
Other entries for this name: alt prot [382aa] LIM homeobox transcription factor 1, alpha isoform a alt prot [100aa] LIM homeobox transcription factor 1, alpha isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 8 1 C cysteine 0.8 1 1 D aspartate 6.8 9 2 E glutamate 3.0 4 1 F phenylalanine 3.0 4 1 G glycine 8.3 11 3 H histidine 3.0 4 1 I isoleucine 2.3 3 1 K lysine 1.5 2 2 L leucine 9.8 13 2 M methionine 4.5 6 1 N asparagine 4.5 6 1 P proline 8.3 11 2 Q glutamine 12.8 17 6 R arginine 3.8 5 2 S serine 10.5 14 2 T threonine 6.0 8 1 V valine 1.5 2 1 W tryptophan 0.0 0 0 Y tyrosine 3.8 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM homeobox transcription factor 1, alpha isoform b... LMX1A 1.000 LIM homeobox transcription factor 1, alpha isoform a... LMX1A 0.748 LIM homeobox transcription factor 1, alpha isoform c... LMX1B 0.468 LIM homeobox transcription factor 1, beta DENND4B 0.044 DENN/MADD domain containing 4B ATXN1 0.036 ataxin 1 ATXN1 0.036 ataxin 1 RAI1 0.036 retinoic acid induced 1 TP63 0.032 tumor protein p63 isoform 5 TP63 0.032 tumor protein p63 isoform 4 TP63 0.032 tumor protein p63 isoform 2 TP63 0.032 tumor protein p63 isoform 1 BTBD12 0.032 BTB (POZ) domain containing 12 NUMBL 0.028 numb homolog (Drosophila)-like CREBBP 0.028 CREB binding protein isoform b CREBBP 0.028 CREB binding protein isoform a THAP11 0.028 THAP domain containing 11 R3HDM1 0.024 R3H domain containing 1 R3HDM2 0.024 R3H domain containing 2 LOC100293256 0.020 PREDICTED: hypothetical protein ATN1 0.020 atrophin-1 ATN1 0.020 atrophin-1 HIRA 0.020 HIR histone cell cycle regulation defective homolog ... MAML3 0.020 mastermind-like 3 RANBP9 0.020 RAN binding protein 9 LOC100290489 0.020 PREDICTED: hypothetical protein XP_002346789 LOC100288758 0.020 PREDICTED: hypothetical protein XP_002342653 LOC100288612 0.020 PREDICTED: hypothetical protein XP_002342081 QSK 0.020 serine/threonine-protein kinase QSK PLEKHG5 0.020 pleckstrin homology domain containing family G membe... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.