Search of human proteins with 40786402

Search of human proteins with 40786402

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40786402 transmembrane protein 179B [Homo sapiens]
         (219 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40786402 transmembrane protein 179B [Homo sapiens]                 438   e-123
gi|46409390 transmembrane protein 179 [Homo sapiens]                   41   0.001
gi|21717816 solute carrier family 15, member 4 [Homo sapiens]          32   0.42 
gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo...    31   0.72 
gi|153792042 G protein-coupled receptor 178 [Homo sapiens]             31   0.94 
gi|58530886 interleukin-1 receptor-associated kinase 2 [Homo sap...    30   2.1  
gi|221139714 actin related protein M1 [Homo sapiens]                   30   2.1  
gi|39780571 misato [Homo sapiens]                                      30   2.1  
gi|117168277 amino acid transporter system A1 [Homo sapiens]           29   3.6  
gi|117168275 amino acid transporter system A1 [Homo sapiens]           29   3.6  
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [...    28   4.7  
gi|32401447 solute carrier family 46, member 3 isoform a [Homo s...    28   8.0  
gi|209571533 solute carrier family 46, member 3 isoform b [Homo ...    28   8.0  

>gi|40786402 transmembrane protein 179B [Homo sapiens]
          Length = 219

 Score =  438 bits (1127), Expect = e-123
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MALSWLQRVELALFAAAFLCGAVAAAAMTRTQGSFSGRCPLYGVATLNGSSLALSRPSAP 60
           MALSWLQRVELALFAAAFLCGAVAAAAMTRTQGSFSGRCPLYGVATLNGSSLALSRPSAP
Sbjct: 1   MALSWLQRVELALFAAAFLCGAVAAAAMTRTQGSFSGRCPLYGVATLNGSSLALSRPSAP 60

Query: 61  SLCYFVAGASGLLALYCLLLLLFWIYSSCIEDSHRGAIGLRIALAISAIAVFLVLVSACI 120
           SLCYFVAGASGLLALYCLLLLLFWIYSSCIEDSHRGAIGLRIALAISAIAVFLVLVSACI
Sbjct: 61  SLCYFVAGASGLLALYCLLLLLFWIYSSCIEDSHRGAIGLRIALAISAIAVFLVLVSACI 120

Query: 121 LRFGTRSLCNSIISLNTTISCSEAQKIPWTPPGTALQFYSNLHNAETSSWVNLVLWCVVL 180
           LRFGTRSLCNSIISLNTTISCSEAQKIPWTPPGTALQFYSNLHNAETSSWVNLVLWCVVL
Sbjct: 121 LRFGTRSLCNSIISLNTTISCSEAQKIPWTPPGTALQFYSNLHNAETSSWVNLVLWCVVL 180

Query: 181 VLQVVQWKSEATPYRPLERGDPEWSSETDALVGSRLSHS 219
           VLQVVQWKSEATPYRPLERGDPEWSSETDALVGSRLSHS
Sbjct: 181 VLQVVQWKSEATPYRPLERGDPEWSSETDALVGSRLSHS 219


>gi|46409390 transmembrane protein 179 [Homo sapiens]
          Length = 197

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 12/157 (7%)

Query: 1   MALSWLQRVELALFAAAFLCGAVAAAAMTRTQGSFSGRCPLYGVATLNGSSLALSRPSA- 59
           MAL+     + A +  AFL   V    ++     F GRC L+       ++L +      
Sbjct: 1   MALNNFLFAQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERERF 60

Query: 60  -------PSLCYFVAGASGLLALYCLLLLLFWIYSSCIEDSHRGAI-GLRIALAISAIAV 111
                  P+ C F   AS L  L         ++  C    H G+     + L +SA  V
Sbjct: 61  TVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLC--KGHEGSFFSAFLNLLVSAFVV 118

Query: 112 FLVLVSACILRFGTRSLCNSIISLNTT-ISCSEAQKI 147
           FLV +++ I+  G    C++I    T   SC E Q I
Sbjct: 119 FLVFIASTIVSVGFTMWCDTITEKGTVPHSCEELQDI 155


>gi|21717816 solute carrier family 15, member 4 [Homo sapiens]
          Length = 577

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 19/134 (14%)

Query: 19  LCGAVAAAAMTRTQGSFSGRCPLYGVATLN-----------GSSLALSRPSAPSLCYFVA 67
           L GA  AAA     G+F+GR    G   L             S+L L    AP  C+  A
Sbjct: 14  LLGARRAAAAAAAAGAFAGRRAACGAVLLTELLERAAFYGITSNLVLFLNGAP-FCWEGA 72

Query: 68  GASGLLALYCLLLLLFWIYSSCIEDSHRG---AIGLRIALAISAIAVFLVLVSACILRFG 124
            AS  L L+  L  L   +   + D+  G   AI L +AL +  +  F +L +       
Sbjct: 73  QASEALLLFMGLTYLGSPFGGWLADARLGRARAILLSLALYLLGMLAFPLLAAPAT---- 128

Query: 125 TRSLCNSIISLNTT 138
             +LC S   LN T
Sbjct: 129 RAALCGSARLLNCT 142


>gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo
           sapiens]
          Length = 1336

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 72  LLALYCLLLLLFWIYSSCIEDSHRGAIGLRIALAISAIAVFLVLVSACILRFGTRSLCNS 131
           ++ L  LLL++ WI   C     R A  L  A  ++ +  F+V    C        LCN 
Sbjct: 526 IMQLVALLLVVLWIRWKCRRLRIREAWLLGTAQGVTML--FIVTALLCC------GLCNG 577

Query: 132 IISLNTTISCSEAQKIPWTPPGTALQFYSNLHNAETSSWVNLVLWC 177
           ++   T I     +   W              N   + W NL LWC
Sbjct: 578 VLIEETEIVMPTPKPELWAET-----------NFPLAPWKNLTLWC 612


>gi|153792042 G protein-coupled receptor 178 [Homo sapiens]
          Length = 612

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 72  LLALYCLLLLLFWIYSSCIEDSHRGAIGLRIALAISAIAVFLVL-VSACILRFGTRSLCN 130
           ++A   +L LLF I  +C E  H   + LR+    +   V LV+ ++   LRFG + L +
Sbjct: 463 VVAAVYILYLLFLIVRACSELRHMPYVDLRLKFLTALTFVVLVISIAILYLRFGAQVLQD 522

Query: 131 SIIS 134
           + ++
Sbjct: 523 NFVA 526


>gi|58530886 interleukin-1 receptor-associated kinase 2 [Homo
           sapiens]
          Length = 625

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 32/206 (15%)

Query: 18  FLCGAVAAAAMTRTQGSFSGRCPLYGVATLNGSSLALSRPSAPSLCYFVAGASGLLALYC 77
           F CG V A  +T      + R P+Y    L    L+    S  SLC    G   ++A   
Sbjct: 399 FSCGIVLAEVLTGIPAMDNNRSPVY----LKDLLLSDIPSSTASLCSRKTGVENVMAK-- 452

Query: 78  LLLLLFWIYSSCIEDSHRGAIGLRIALAISAIAVFLVLVSACILRFGT--RSLCNSIISL 135
                      C +   +GA  L    A  A+A    L   C+ R  T  + +C S+ ++
Sbjct: 453 ---------EICQKYLEKGAGRLPEDCA-EALATAACL---CLRRRNTSLQEVCGSVAAV 499

Query: 136 NTTISCSEAQKIPWTPPGTALQFYSNLHNAETSSWVNLVLWCVVLVLQVVQWKSEATPYR 195
              +   E   +PW+  G +    S+ +  E +  V+         + V  W   ATP  
Sbjct: 500 EERLRGRETL-LPWS--GLSEGTGSSSNTPEETDDVDNSSLDASSSMSVAPWAGAATPLL 556

Query: 196 PLERGD--------PEWSSETDALVG 213
           P E G+         E  S ++A VG
Sbjct: 557 PTENGEGRLRVIVGREADSSSEACVG 582


>gi|221139714 actin related protein M1 [Homo sapiens]
          Length = 372

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 11  LALFAAAFLCGAV--AAAAMTRTQGSFSGRCPLYGVATLNGSSLALS 55
           LALFAA F  G V  + A +T++   F G C  +GV  L+ + L L+
Sbjct: 139 LALFAAGFTTGLVLNSGAGVTQSVPIFEGYCLPHGVQQLDLAGLDLT 185


>gi|39780571 misato [Homo sapiens]
          Length = 570

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 116 VSACILRFGTRSLCNSIISLNTTISCSEAQKIPWTPPGTAL 156
           +SAC    GTR    S++      +C  +Q  P TPP +AL
Sbjct: 400 LSACGEPSGTRCFAQSVVLRGIDRACHTSQLTPGTPPPSAL 440


>gi|117168277 amino acid transporter system A1 [Homo sapiens]
          Length = 487

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 96  GAIGLRIALAISAIAVFLVLVSACILRFGTRSLCNSIISLNTTISCSE 143
           G +GL  ALA + I +FLVL+++  L         SI S+N  + CS+
Sbjct: 88  GILGLAFALANTGILLFLVLLTSVTLL--------SIYSINLLLICSK 127


>gi|117168275 amino acid transporter system A1 [Homo sapiens]
          Length = 487

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 96  GAIGLRIALAISAIAVFLVLVSACILRFGTRSLCNSIISLNTTISCSE 143
           G +GL  ALA + I +FLVL+++  L         SI S+N  + CS+
Sbjct: 88  GILGLAFALANTGILLFLVLLTSVTLL--------SIYSINLLLICSK 127


>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
            sapiens]
          Length = 1636

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 152  PGTALQFYSNLHNAETSSWVNLVLWCVVLVLQVVQWKSEATPYRPLERGDP 202
            PGTA  F+  +H  + S         V+LV +    K +   Y P ERG P
Sbjct: 1267 PGTAADFWLMVHEQKVSV-------IVMLVSEAEMEKQKVARYFPTERGQP 1310


>gi|32401447 solute carrier family 46, member 3 isoform a [Homo
           sapiens]
          Length = 461

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 62  LCY---FVAGASGL-LALYCLLLLLFWIYSSCIEDSHRGAIGLRIALAISAIAVF 112
           LC+   F+   S L  A +    L  W++S C+ED H   IG+   +   A+  F
Sbjct: 290 LCWNEVFIGYGSALGSASFLTSFLGIWLFSYCMEDIHMAFIGIFTTMTGMAMTAF 344


>gi|209571533 solute carrier family 46, member 3 isoform b [Homo
           sapiens]
          Length = 463

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 62  LCY---FVAGASGL-LALYCLLLLLFWIYSSCIEDSHRGAIGLRIALAISAIAVF 112
           LC+   F+   S L  A +    L  W++S C+ED H   IG+   +   A+  F
Sbjct: 290 LCWNEVFIGYGSALGSASFLTSFLGIWLFSYCMEDIHMAFIGIFTTMTGMAMTAF 344


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,300,455
Number of Sequences: 37866
Number of extensions: 326849
Number of successful extensions: 1081
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 14
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.