Guide to the Human Genome
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Name: SLC46A3 Sequence: fasta or formatted (461aa) NCBI GI: 32401447
Description:

solute carrier family 46, member 3 isoform a

Referenced in:

Stomach, Small Intestine, and Colon
Solute Carrier Families
T cells

Other entries for this name:
alt prot [463aa] solute carrier family 46, member 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         31           1
 C cysteine            3.0         14           1
 D aspartate           2.2         10           1
 E glutamate           4.8         22           2
 F phenylalanine      10.0         46           2
 G glycine             6.7         31           2
 H histidine           0.7          3           1
 I isoleucine          8.0         37           2
 K lysine              3.3         15           2
 L leucine            12.6         58           4
 M methionine          3.0         14           2
 N asparagine          2.6         12           1
 P proline             2.8         13           1
 Q glutamine           2.2         10           1
 R arginine            2.8         13           2
 S serine              9.8         45           2
 T threonine           7.4         34           2
 V valine              5.9         27           2
 W tryptophan          1.7          8           1
 Y tyrosine            3.9         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 46, member 3 isoform a 
SLC46A3               1.000   solute carrier family 46, member 3 isoform b 
SLC46A1               0.221   proton-coupled folate transporter 
SLC46A2               0.151   solute carrier family 46, member 2 
HIATL1                0.017   hippocampus abundant transcript-like 1 
MFSD9                 0.011   major facilitator superfamily domain containing 9 [...
HIAT1                 0.011   hippocampus abundant transcript 1 
SLC2A9                0.009   solute carrier family 2, member 9 protein isoform 2 ...
SLC2A9                0.009   solute carrier family 2, member 9 protein isoform 1 ...
SLC43A2               0.009   solute carrier family 43, member 2 
NPC1                  0.008   Niemann-Pick disease, type C1 precursor 
SLC24A5               0.008   solute carrier family 24, member 5 
MMRN1                 0.007   multimerin 1 
SLC22A4               0.006   solute carrier family 22 member 4 
CD47                  0.006   CD47 antigen isoform 3 precursor 
CD47                  0.006   CD47 antigen isoform 2 precursor 
CD47                  0.006   CD47 antigen isoform 1 precursor 
SLC2A4                0.006   glucose transporter 4 
LOC100294451          0.006   PREDICTED: similar to hCG1820960 
OR2D3                 0.006   olfactory receptor, family 2, subfamily D, member 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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