SYNPO2 10731

Name: SYNPO2	Sequence: fasta or formatted (1093aa)		NCBI GI: 193083185
Description: synaptopodin 2 isoform b		Referenced in: Synapses
Other entries for this name: alt prot [1261aa] synaptopodin 2 isoform a alt prot [1109aa] synaptopodin 2 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.7 95 2 C cysteine 1.0 11 1 D aspartate 4.0 44 2 E glutamate 7.0 77 4 F phenylalanine 2.6 28 2 G glycine 6.6 72 2 H histidine 1.3 14 1 I isoleucine 3.1 34 2 K lysine 6.8 74 3 L leucine 5.9 65 3 M methionine 1.8 20 1 N asparagine 3.2 35 1 P proline 10.8 118 3 Q glutamine 5.5 60 2 R arginine 5.2 57 4 S serine 11.8 129 4 T threonine 5.3 58 3 V valine 6.9 75 2 W tryptophan 0.6 7 1 Y tyrosine 1.8 20 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptopodin 2 isoform b SYNPO2 0.992 synaptopodin 2 isoform c SYNPO2 0.992 synaptopodin 2 isoform a SYNPO2L 0.150 synaptopodin 2-like isoform a SYNPO2L 0.148 synaptopodin 2-like isoform b SYNPO 0.040 synaptopodin isoform B SYNPO 0.035 synaptopodin isoform A POLR2A 0.023 DNA-directed RNA polymerase II A MLL2 0.021 myeloid/lymphoid or mixed-lineage leukemia 2 PDLIM1 0.021 PDZ and LIM domain 1 NACA 0.021 nascent polypeptide-associated complex alpha subuni... FLJ22184 0.020 PREDICTED: hypothetical protein FLJ22184 PDLIM5 0.020 PDZ and LIM domain 5 isoform b FLJ22184 0.019 PREDICTED: hypothetical protein FLJ22184 PDLIM5 0.019 PDZ and LIM domain 5 isoform d RAPH1 0.019 Ras association and pleckstrin homology domains 1 is... LDB3 0.019 LIM domain binding 3 isoform 3 LDB3 0.019 LIM domain binding 3 isoform 1 PDLIM5 0.019 PDZ and LIM domain 5 isoform e PDLIM5 0.019 PDZ and LIM domain 5 isoform a LOC284297 0.018 hypothetical protein LOC284297 LDB3 0.017 LIM domain binding 3 isoform 4 LDB3 0.017 LIM domain binding 3 isoform 2 MDC1 0.017 mediator of DNA-damage checkpoint 1 SHROOM4 0.017 shroom family member 4 PDLIM4 0.016 PDZ and LIM domain 4 isoform 2 PDLIM4 0.016 PDZ and LIM domain 4 isoform 1 FLJ22184 0.016 PREDICTED: hypothetical protein LOC80164 TACC2 0.016 transforming, acidic coiled-coil containing protein... TACC2 0.016 transforming, acidic coiled-coil containing protein ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.