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Search of human proteins with 40317632
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40317632 nudix-type motif 4 isoform alpha [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40317632 nudix-type motif 4 isoform alpha [Homo sapiens] 371 e-103
gi|40317634 nudix-type motif 4 isoform beta [Homo sapiens] 366 e-102
gi|37221177 nudix-type motif 11 [Homo sapiens] 306 8e-84
gi|41393549 nudix-type motif 10 [Homo sapiens] 303 5e-83
gi|5729804 nudix-type motif 3 [Homo sapiens] 258 2e-69
gi|20149583 nudix-type motif 6 isoform a [Homo sapiens] 46 2e-05
gi|37594461 nudix-type motif 6 isoform b [Homo sapiens] 44 6e-05
gi|118026927 nudix (nucleoside diphosphate linked moiety X)-type... 39 0.002
gi|22219467 nudix-type motif 2 [Homo sapiens] 39 0.002
gi|22219465 nudix-type motif 2 [Homo sapiens] 39 0.002
gi|4502125 nudix-type motif 2 [Homo sapiens] 39 0.002
gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type ... 37 0.012
gi|31542498 DCP2 decapping enzyme [Homo sapiens] 36 0.016
gi|37594464 nudix-type motif 5 [Homo sapiens] 30 1.1
gi|29568105 transmembrane protein with EGF-like and two follista... 30 1.5
gi|32698954 hypothetical protein LOC283991 [Homo sapiens] 29 1.9
gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens] 29 2.5
gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens] 29 2.5
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 29 2.5
gi|37693995 Kruppel-like factor 13 [Homo sapiens] 28 3.3
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 28 5.6
gi|37594457 nudix-type motif 9 isoform b [Homo sapiens] 27 7.3
gi|13129010 nudix-type motif 9 isoform a [Homo sapiens] 27 7.3
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 27 9.5
>gi|40317632 nudix-type motif 4 isoform alpha [Homo sapiens]
Length = 180
Score = 371 bits (952), Expect = e-103
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG 60
MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
Sbjct: 1 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG 60
Query: 61 GAAVREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF 120
GAAVREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF
Sbjct: 61 GAAVREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF 120
Query: 121 KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR 180
KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
Sbjct: 121 KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR 180
>gi|40317634 nudix-type motif 4 isoform beta [Homo sapiens]
Length = 181
Score = 366 bits (940), Expect = e-102
Identities = 180/181 (99%), Positives = 180/181 (99%), Gaps = 1/181 (0%)
Query: 1 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG 60
MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
Sbjct: 1 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG 60
Query: 61 GAAVREVYEEAGVKGKLGRLLGIFE-NQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREW 119
GAAVREVYEEAGVKGKLGRLLGIFE NQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREW
Sbjct: 61 GAAVREVYEEAGVKGKLGRLLGIFEQNQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREW 120
Query: 120 FKVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSV 179
FKVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSV
Sbjct: 121 FKVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSV 180
Query: 180 R 180
R
Sbjct: 181 R 181
>gi|37221177 nudix-type motif 11 [Homo sapiens]
Length = 164
Score = 306 bits (783), Expect = 8e-84
Identities = 148/163 (90%), Positives = 155/163 (95%), Gaps = 1/163 (0%)
Query: 2 MKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGG 61
MK KPNQTRTYD EGFKKRAACLCFRSE+EDEVLLVSSSRYPD+WIVPGGGMEPEEEPGG
Sbjct: 1 MKCKPNQTRTYDPEGFKKRAACLCFRSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPGG 60
Query: 62 AAVREVYEEAGVKGKLGRLLGIFE-NQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF 120
AAVREVYEEAGVKGKLGRLLG+FE NQDRKHRTYVYVLTVTE+LEDWEDSV+IGRKREWF
Sbjct: 61 AAVREVYEEAGVKGKLGRLLGVFEQNQDRKHRTYVYVLTVTELLEDWEDSVSIGRKREWF 120
Query: 121 KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNN 163
KVEDAIKVLQCHKPVHAEYLEKLKLG SP NGNS PS PD++
Sbjct: 121 KVEDAIKVLQCHKPVHAEYLEKLKLGGSPTNGNSMAPSSPDSD 163
>gi|41393549 nudix-type motif 10 [Homo sapiens]
Length = 164
Score = 303 bits (776), Expect = 5e-83
Identities = 147/163 (90%), Positives = 154/163 (94%), Gaps = 1/163 (0%)
Query: 2 MKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGG 61
MK KPNQTRTYD EGFKKRAACLCFRSE+EDEVLLVSSSRYPD+WIVPGGGMEPEEEPGG
Sbjct: 1 MKCKPNQTRTYDPEGFKKRAACLCFRSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPGG 60
Query: 62 AAVREVYEEAGVKGKLGRLLGIFE-NQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF 120
AAVREVYEEAGVKGKLGRLLG+FE NQD KHRTYVYVLTVTE+LEDWEDSV+IGRKREWF
Sbjct: 61 AAVREVYEEAGVKGKLGRLLGVFEQNQDPKHRTYVYVLTVTELLEDWEDSVSIGRKREWF 120
Query: 121 KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNN 163
KVEDAIKVLQCHKPVHAEYLEKLKLG SP NGNS PS PD++
Sbjct: 121 KVEDAIKVLQCHKPVHAEYLEKLKLGGSPTNGNSMAPSSPDSD 163
>gi|5729804 nudix-type motif 3 [Homo sapiens]
Length = 172
Score = 258 bits (659), Expect = 2e-69
Identities = 125/156 (80%), Positives = 135/156 (86%)
Query: 1 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG 60
MMK K NQTRTYD +G+KKRAACLCFRSE E+EVLLVSSSR+PD+WIVPGGGMEPEEEP
Sbjct: 1 MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPS 60
Query: 61 GAAVREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF 120
AAVREV EEAGVKG LGRL+GIFENQ+RKHRTYVYVL VTE+LEDWEDSVNIGRKREWF
Sbjct: 61 VAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWF 120
Query: 121 KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTV 156
K+EDAIKVLQ HKPV A Y E L+ G S NG V
Sbjct: 121 KIEDAIKVLQYHKPVQASYFETLRQGYSANNGTPVV 156
>gi|20149583 nudix-type motif 6 isoform a [Homo sapiens]
Length = 316
Score = 46.2 bits (108), Expect = 2e-05
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 29 EQEDEVLLVSS-SRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGI 83
E ++L+V ++ + W PGG EPEE+ G AVREV+EE G+K + +L I
Sbjct: 153 ESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSI 208
>gi|37594461 nudix-type motif 6 isoform b [Homo sapiens]
Length = 147
Score = 44.3 bits (103), Expect = 6e-05
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 46 WIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGI 83
W PGG EPEE+ G AVREV+EE G+K + +L I
Sbjct: 2 WKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSI 39
>gi|118026927 nudix (nucleoside diphosphate linked moiety X)-type
motif 18 [Homo sapiens]
Length = 323
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 26 FRSEQEDEVLLVSSSRYP--DQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGI 83
F SEQ DEVLL+ ++ W +P G MEP E A REV EEAG+ + LL +
Sbjct: 50 FLSEQ-DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSV 108
Query: 84 FENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVH 136
E R IL+ +++ + W+ L+ H +H
Sbjct: 109 EERGPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHDILH 161
>gi|22219467 nudix-type motif 2 [Homo sapiens]
Length = 147
Score = 38.9 bits (89), Expect = 0.002
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 33 EVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQ----- 87
E LL+ +S W P G +EP E+ A+RE EEAG++ ++ F+ +
Sbjct: 25 EFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVA 84
Query: 88 DRKHRTYVYVLTVTEILEDWEDSVNIGRKRE---WFKVEDAIKVLQCHKPVHAEYLEKLK 144
K +T +Y L ++D++ + + + + W +E+A ++ Q K + A E +
Sbjct: 85 RNKPKTVIYWLAE---VKDYDVEIRLSHEHQAYRWLGLEEACQLAQ-FKEMKAALQEGHQ 140
Query: 145 LGCS 148
CS
Sbjct: 141 FLCS 144
>gi|22219465 nudix-type motif 2 [Homo sapiens]
Length = 147
Score = 38.9 bits (89), Expect = 0.002
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 33 EVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQ----- 87
E LL+ +S W P G +EP E+ A+RE EEAG++ ++ F+ +
Sbjct: 25 EFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVA 84
Query: 88 DRKHRTYVYVLTVTEILEDWEDSVNIGRKRE---WFKVEDAIKVLQCHKPVHAEYLEKLK 144
K +T +Y L ++D++ + + + + W +E+A ++ Q K + A E +
Sbjct: 85 RNKPKTVIYWLAE---VKDYDVEIRLSHEHQAYRWLGLEEACQLAQ-FKEMKAALQEGHQ 140
Query: 145 LGCS 148
CS
Sbjct: 141 FLCS 144
>gi|4502125 nudix-type motif 2 [Homo sapiens]
Length = 147
Score = 38.9 bits (89), Expect = 0.002
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 33 EVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQ----- 87
E LL+ +S W P G +EP E+ A+RE EEAG++ ++ F+ +
Sbjct: 25 EFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVA 84
Query: 88 DRKHRTYVYVLTVTEILEDWEDSVNIGRKRE---WFKVEDAIKVLQCHKPVHAEYLEKLK 144
K +T +Y L ++D++ + + + + W +E+A ++ Q K + A E +
Sbjct: 85 RNKPKTVIYWLAE---VKDYDVEIRLSHEHQAYRWLGLEEACQLAQ-FKEMKAALQEGHQ 140
Query: 145 LGCS 148
CS
Sbjct: 141 FLCS 144
>gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type
motif 17 [Homo sapiens]
Length = 328
Score = 36.6 bits (83), Expect = 0.012
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Query: 43 PDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRL----LGIFENQ---------DR 89
P+ W+ PGG +E EEE +RE++EE+G+ G+ LG++E+ +
Sbjct: 119 PNLWVPPGGHVELEEELLDGGLRELWEESGLHLPQGQFSWVPLGLWESAYPPRLSWGLPK 178
Query: 90 KHRTYVYVLTVTE 102
H +Y+L +++
Sbjct: 179 YHHIVLYLLVISQ 191
>gi|31542498 DCP2 decapping enzyme [Homo sapiens]
Length = 420
Score = 36.2 bits (82), Expect = 0.016
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 29 EQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAG--VKGKLGRLLGI-FE 85
E + VLLV W P G + EE P A REV+EE G +K + + I
Sbjct: 107 ETLENVLLVQGYLAKSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELR 166
Query: 86 NQDRKHRTYVYVLTVTEILEDWEDSVNIGRK---REWFKVEDAIKVLQCHKPVHAEYLEK 142
D+ R Y+ + I +D + + R+ EWF +E L CH+ + K
Sbjct: 167 INDQLARLYI----IPGIPKDTKFNPKTRREIRNIEWFSIEK----LPCHR---NDMTPK 215
Query: 143 LKLGCSPANGNSTVP 157
KLG +P +P
Sbjct: 216 SKLGLAPNKFFMAIP 230
>gi|37594464 nudix-type motif 5 [Homo sapiens]
Length = 219
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 49 PGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDWE 108
P G ++ E P AA+RE+ EE G KG + ++++TVT +D E
Sbjct: 95 PAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAE 154
Query: 109 DS 110
++
Sbjct: 155 NA 156
>gi|29568105 transmembrane protein with EGF-like and two
follistatin-like domains 1 [Homo sapiens]
Length = 380
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 11 TYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEE 70
TY E F +RAAC Q++ ++ Y D G E EEE GA V + +
Sbjct: 117 TYQNECFLRRAAC----KHQKEITVIARGPCYSDN---GSGSGEGEEEGSGAEVHRKHSK 169
Query: 71 AG 72
G
Sbjct: 170 CG 171
>gi|32698954 hypothetical protein LOC283991 [Homo sapiens]
Length = 164
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 147 CSPANGNSTVPSLPDNNALFVTAAQTSGLPSS 178
C+P+N +T P+ PD A+F + GL SS
Sbjct: 63 CTPSNTPATPPNFPDALAMFSKLRASEGLQSS 94
>gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]
Length = 706
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 32 DEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEE 70
+E+ ++ RY D ++P G +E EEE GG + R+ + E
Sbjct: 35 NELPSAATLRYRDPGVLPWGALEEEEEDGGRS-RKAFTE 72
>gi|223718080 transmembrane channel-like 4 isoform 1 [Homo
sapiens]
Length = 712
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 32 DEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEE 70
+E+ ++ RY D ++P G +E EEE GG + R+ + E
Sbjct: 41 NELPSAATLRYRDPGVLPWGALEEEEEDGGRS-RKAFTE 78
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 28.9 bits (63), Expect = 2.5
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 53 MEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQDRKHR---TYVYVLTVTEILEDWED 109
+E + EP + + E Y+E ++ + Q R R T VY V E D
Sbjct: 3771 IETDPEPAHSVLEENYQELQLQISANVDFASYHCQARDVRFKETLVYQTRVFEF-----D 3825
Query: 110 SVNIGRKREWFK--VEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDN 162
+N GR + F ED K + KP H +K +L + ST+ S D+
Sbjct: 3826 VINSGRVQLEFSWVSEDTSKAVSFAKPDHQGSAQKDQLSQGTMHTGSTLDSTMDH 3880
>gi|37693995 Kruppel-like factor 13 [Homo sapiens]
Length = 288
Score = 28.5 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 49 PGGGMEPEEEPGGAAVREVYEEAGVKGKL--GRLLGIFENQDRKHRTY 94
P G+EPE EPG A E G++ ++ GR E+ RKH+ +
Sbjct: 127 PEAGLEPEREPGPAG----SGEPGLRQRVRRGRSRADLESPQRKHKCH 170
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 27.7 bits (60), Expect = 5.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 43 PDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRL 80
P I P G M P+ PG + EAG+KG LG L
Sbjct: 1136 PQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPL 1173
>gi|37594457 nudix-type motif 9 isoform b [Homo sapiens]
Length = 300
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 45 QWIVPGGGMEPEEEPGGAAVREVYEEA 71
+W +PGG ++P E+ RE EEA
Sbjct: 159 EWAIPGGMVDPGEKISATLKREFGEEA 185
>gi|13129010 nudix-type motif 9 isoform a [Homo sapiens]
Length = 350
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 45 QWIVPGGGMEPEEEPGGAAVREVYEEA 71
+W +PGG ++P E+ RE EEA
Sbjct: 209 EWAIPGGMVDPGEKISATLKREFGEEA 235
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 26.9 bits (58), Expect = 9.5
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 18 KKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPG-GGMEPEEEPGGAAVRE 66
+KR+ C SE E+E S + D + G GG E+EPGG R+
Sbjct: 798 RKRSRSTCGDSEVEEE----SPGKRLDAGLTNGFGGARSEQEPGGGLGRK 843
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,690,939
Number of Sequences: 37866
Number of extensions: 360203
Number of successful extensions: 932
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 24
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.