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Search of human proteins with 40288203
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo
sapiens]
(671 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens] 1361 0.0
gi|40288199 hypothetical protein LOC219287 isoform 2 [Homo sapiens] 757 0.0
gi|124244056 family with sequence similarity 123B [Homo sapiens] 209 9e-54
gi|157427665 hypothetical protein LOC205147 [Homo sapiens] 112 8e-25
gi|157427663 hypothetical protein LOC205147 [Homo sapiens] 112 8e-25
gi|157427661 hypothetical protein LOC205147 [Homo sapiens] 112 8e-25
gi|157427667 hypothetical protein LOC205147 [Homo sapiens] 112 8e-25
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 56 1e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 56 1e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 54 6e-07
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 53 8e-07
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 53 1e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 52 2e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 52 2e-06
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 50 5e-06
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 50 5e-06
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 50 5e-06
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 50 5e-06
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-05
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 48 3e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 48 3e-05
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 48 3e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 48 3e-05
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 47 4e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 47 4e-05
gi|117938759 GNAS complex locus XLas [Homo sapiens] 47 6e-05
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 46 1e-04
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
>gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens]
Length = 671
Score = 1361 bits (3522), Expect = 0.0
Identities = 671/671 (100%), Positives = 671/671 (100%)
Query: 1 METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS 60
METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS
Sbjct: 1 METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS 60
Query: 61 GKINKAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRK 120
GKINKAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRK
Sbjct: 61 GKINKAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRK 120
Query: 121 EEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEP 180
EEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEP
Sbjct: 121 EEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEP 180
Query: 181 VDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE 240
VDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE
Sbjct: 181 VDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE 240
Query: 241 TPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDA 300
TPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDA
Sbjct: 241 TPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDA 300
Query: 301 AGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSAD 360
AGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSAD
Sbjct: 301 AGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSAD 360
Query: 361 RICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQG 420
RICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQG
Sbjct: 361 RICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQG 420
Query: 421 GGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCVE 480
GGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCVE
Sbjct: 421 GGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCVE 480
Query: 481 AAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSG 540
AAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSG
Sbjct: 481 AAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSG 540
Query: 541 KKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTPG 600
KKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTPG
Sbjct: 541 KKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTPG 600
Query: 601 SLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVSNRGLAGTTIR 660
SLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVSNRGLAGTTIR
Sbjct: 601 SLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVSNRGLAGTTIR 660
Query: 661 ATACHDSAKKL 671
ATACHDSAKKL
Sbjct: 661 ATACHDSAKKL 671
>gi|40288199 hypothetical protein LOC219287 isoform 2 [Homo sapiens]
Length = 552
Score = 757 bits (1954), Expect = 0.0
Identities = 429/681 (62%), Positives = 453/681 (66%), Gaps = 139/681 (20%)
Query: 1 METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS 60
METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS
Sbjct: 1 METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS 60
Query: 61 GKINKAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRK 120
GKINKAAFKLFKKRKSGGTMPSIFGVK
Sbjct: 61 GKINKAAFKLFKKRKSGGTMPSIFGVK--------------------------------- 87
Query: 121 EEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFS--LLKKNGRSENGKG 178
N G +++GP G L S ++H + L+ ++GR E +G
Sbjct: 88 -----------------NKGDGKSSGPTG--LVRS---RTHDGLAEVLVLESGRKEEPRG 125
Query: 179 EPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTAS---LE 235
GG+ G PGGG + S+ S
Sbjct: 126 GGDSGGGGGGRPNPG--------------------PPRAAGPGGGSLASSSVAKSHSFFS 165
Query: 236 CVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLA-----HP 290
+K+ G G+ P A +A + R GL H
Sbjct: 166 LLKKN--------------------GRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHR 205
Query: 291 GDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPAS 350
D A+ E A G PG G + + V +T RA P+ S
Sbjct: 206 KDKRAKAEAAEGRA---PGGGLILPGSLTASLECVKEETP----------RAAREPEEPS 252
Query: 351 VDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSK 410
D P DP+ GCGDIIADQEEEAGPSCDKHVPGPGKPALSK
Sbjct: 253 QDAPRDPA---------------------GCGDIIADQEEEAGPSCDKHVPGPGKPALSK 291
Query: 411 KNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVP 470
KNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVP
Sbjct: 292 KNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVP 351
Query: 471 ETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTP 530
ETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTP
Sbjct: 352 ETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTP 411
Query: 531 GPEEDSSSSGKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPG 590
GPEEDSSSSGKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPG
Sbjct: 412 GPEEDSSSSGKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPG 471
Query: 591 TITCPLRTPGSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVS 650
TITCPLRTPGSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVS
Sbjct: 472 TITCPLRTPGSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVS 531
Query: 651 NRGLAGTTIRATACHDSAKKL 671
NRGLAGTTIRATACHDSAKKL
Sbjct: 532 NRGLAGTTIRATACHDSAKKL 552
>gi|124244056 family with sequence similarity 123B [Homo sapiens]
Length = 1135
Score = 209 bits (531), Expect = 9e-54
Identities = 196/603 (32%), Positives = 274/603 (45%), Gaps = 109/603 (18%)
Query: 1 METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS 60
MET + ++ GA AS + AE GA AA+ A E P +EP S
Sbjct: 1 METQKDEA-----AQAKGAAASGSTREQTAEKGAKNK--AAE-------ATEGPTSEPSS 46
Query: 61 ---GKINKAAFKLFKKRKSGGTMPSIFGV-KNKGDGKSSGPTGLVRSRTHDGLAEVLVLE 116
G++ K A KLF +K T+PS FG ++KG GK S GL +S+THDGL+E
Sbjct: 47 SGPGRLKKTAMKLFGGKKGICTLPSFFGGGRSKGSGKGSSKKGLSKSKTHDGLSEAA--- 103
Query: 117 SGRKEEPRGGGD--SGGGGGGRPNPGPP---RAAGPGGGSLASSSVAKSHSFFSLLKKNG 171
G D S G G P P P ++ G+L + S K+ G
Sbjct: 104 -------HGPEDVVSEGTGFSLPLPELPCQFPSSQSAHGALETGSRCKT-------SVAG 149
Query: 172 RSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLIL--PGS 229
+E E + K K+GL+G FS +R HRK K AE +E A G + P
Sbjct: 150 ATEKAVAEKFPSMP---KPKKGLKGFFSSIRRHRKSKVTGAEQSEPGAKGPERVRARPHE 206
Query: 230 LTASLECVK--EETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPAR---SCREA 284
+S V EET +A R+ QDAP G + P P PA +C++
Sbjct: 207 HVSSAPQVPCFEETFQAPRKENANPQDAP--------GPKVSPTPEPSPPATEKMACKDP 258
Query: 285 EGLAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPA 344
E + +A +P P ++ + + K V
Sbjct: 259 E----------KPMEACASAHVQPKPAPEASSLEEPHSPETGEKVVA------------- 295
Query: 345 APDPASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPG 404
V+PP+ P D + L+F DVTSLKSFDSLTGCGDIIA+Q+ + S + G
Sbjct: 296 ----GEVNPPNGPVGDPLSLLFGDVTSLKSFDSLTGCGDIIAEQDMD---SMTDSMASGG 348
Query: 405 KPAL---SKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVA 461
+ A +K++ +V YQGGGEEMA PD+ D+ +E L + EE+ E +E
Sbjct: 349 QRANRDGTKRSSCLVTYQGGGEEMALPDDDDEEEEEEEEVELEEEEEEVKEEEEDD---- 404
Query: 462 AALETKVVPET----PKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKH---PEKEQQ 514
+ + + ET P+ + S + P+ +P P P+ +QQ
Sbjct: 405 ---DLEYLWETAQMYPRPNMNLGYHPTTSPGHHGYMLLDPVRSYPGLAPGELLTPQSDQQ 461
Query: 515 EGVPNSDEGYWDSTTPGPEEDSSSS---GKKAGIPRDSYSGDALYDLYADPDGSPATLPG 571
E PNSDEGY+DSTTPG E+DS + ++ +PRDSYSGDALY+ Y +PD S P
Sbjct: 462 ESAPNSDEGYYDSTTPGFEDDSGEALGLVRRDCLPRDSYSGDALYEFY-EPDDSLENSPP 520
Query: 572 GKD 574
G D
Sbjct: 521 GDD 523
>gi|157427665 hypothetical protein LOC205147 [Homo sapiens]
Length = 861
Score = 112 bits (281), Expect = 8e-25
Identities = 131/459 (28%), Positives = 183/459 (39%), Gaps = 112/459 (24%)
Query: 191 KRGLRGLFSGMRW-HRK--DKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAARE 247
KRG + S ++ H K D A A A EG P +LPG E+ P+A+
Sbjct: 4 KRGKTFIKSSLQVSHEKPPDPAAVAAAREGTGPWS--VLPGGQQRPHS---EKGPQASPS 58
Query: 248 PEE----PSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGH 303
+E P++ A DP G PA A P R C+ + ++ G A G
Sbjct: 59 AQEYDRCPNKGAQLDPKGGPAA----LCGATFKPVRKCKTHDSMSGAGRATAATGQLVGS 114
Query: 304 RRAEPGPGEVRTAEDASRTGAVP-----VKTVPL-------------------------- 332
PG R + +P K++P
Sbjct: 115 ASFPGSPGSRRMIDYRHFVPQMPFVPAVAKSIPRKRISLKRPKKCFRNLFHIRRNKTEDL 174
Query: 333 --VDSEGGSGRAPAAP-DP------ASVDPPSDPSADRIC------------------LM 365
+ +EG S +P P DP A + P P D +C +
Sbjct: 175 ASLAAEGKSLPSPGDPSDPGGRRSKAFLPPGEGPGLDGLCQDLLDSELLADASFGLCRAL 234
Query: 366 FSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPA-----LSKKNPGVVAYQG 420
DV SL+SFDSLTGCG++ AD E + PS + + GP P L K P QG
Sbjct: 235 CEDVASLQSFDSLTGCGEVFAD--ESSVPSLELN-EGPESPTQAAQGLESKVPRG-PLQG 290
Query: 421 GGEEMASPDEVDDTYLQEFWDMLSQTEEQ------GP--EPQEGAAKVAAALETKVVPET 472
E++ASP + + + FWD ++++ Q GP +G + + L+T + E
Sbjct: 291 SVEQLASPAQNEASDFTRFWDSVNRSVRQQQRALLGPWLSGPQGTDRDQSRLDTAGLAEL 350
Query: 473 PK-DTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPG 531
P R + ASS+ + P+ EQ E V SDEGY+DS +PG
Sbjct: 351 PLCPCRDPRSGSKASSI----------------DTGTPKSEQPESVSTSDEGYYDSFSPG 394
Query: 532 PEED----SSSSGKKAGIPRDSYSGDALYDLYADPDGSP 566
EED S A PRDSYSGDALY+L+ DP P
Sbjct: 395 LEEDKKEAESPGTPAATFPRDSYSGDALYELFHDPSEGP 433
>gi|157427663 hypothetical protein LOC205147 [Homo sapiens]
Length = 861
Score = 112 bits (281), Expect = 8e-25
Identities = 131/459 (28%), Positives = 183/459 (39%), Gaps = 112/459 (24%)
Query: 191 KRGLRGLFSGMRW-HRK--DKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAARE 247
KRG + S ++ H K D A A A EG P +LPG E+ P+A+
Sbjct: 4 KRGKTFIKSSLQVSHEKPPDPAAVAAAREGTGPWS--VLPGGQQRPHS---EKGPQASPS 58
Query: 248 PEE----PSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGH 303
+E P++ A DP G PA A P R C+ + ++ G A G
Sbjct: 59 AQEYDRCPNKGAQLDPKGGPAA----LCGATFKPVRKCKTHDSMSGAGRATAATGQLVGS 114
Query: 304 RRAEPGPGEVRTAEDASRTGAVP-----VKTVPL-------------------------- 332
PG R + +P K++P
Sbjct: 115 ASFPGSPGSRRMIDYRHFVPQMPFVPAVAKSIPRKRISLKRPKKCFRNLFHIRRNKTEDL 174
Query: 333 --VDSEGGSGRAPAAP-DP------ASVDPPSDPSADRIC------------------LM 365
+ +EG S +P P DP A + P P D +C +
Sbjct: 175 ASLAAEGKSLPSPGDPSDPGGRRSKAFLPPGEGPGLDGLCQDLLDSELLADASFGLCRAL 234
Query: 366 FSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPA-----LSKKNPGVVAYQG 420
DV SL+SFDSLTGCG++ AD E + PS + + GP P L K P QG
Sbjct: 235 CEDVASLQSFDSLTGCGEVFAD--ESSVPSLELN-EGPESPTQAAQGLESKVPRG-PLQG 290
Query: 421 GGEEMASPDEVDDTYLQEFWDMLSQTEEQ------GP--EPQEGAAKVAAALETKVVPET 472
E++ASP + + + FWD ++++ Q GP +G + + L+T + E
Sbjct: 291 SVEQLASPAQNEASDFTRFWDSVNRSVRQQQRALLGPWLSGPQGTDRDQSRLDTAGLAEL 350
Query: 473 PK-DTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPG 531
P R + ASS+ + P+ EQ E V SDEGY+DS +PG
Sbjct: 351 PLCPCRDPRSGSKASSI----------------DTGTPKSEQPESVSTSDEGYYDSFSPG 394
Query: 532 PEED----SSSSGKKAGIPRDSYSGDALYDLYADPDGSP 566
EED S A PRDSYSGDALY+L+ DP P
Sbjct: 395 LEEDKKEAESPGTPAATFPRDSYSGDALYELFHDPSEGP 433
>gi|157427661 hypothetical protein LOC205147 [Homo sapiens]
Length = 861
Score = 112 bits (281), Expect = 8e-25
Identities = 131/459 (28%), Positives = 183/459 (39%), Gaps = 112/459 (24%)
Query: 191 KRGLRGLFSGMRW-HRK--DKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAARE 247
KRG + S ++ H K D A A A EG P +LPG E+ P+A+
Sbjct: 4 KRGKTFIKSSLQVSHEKPPDPAAVAAAREGTGPWS--VLPGGQQRPHS---EKGPQASPS 58
Query: 248 PEE----PSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGH 303
+E P++ A DP G PA A P R C+ + ++ G A G
Sbjct: 59 AQEYDRCPNKGAQLDPKGGPAA----LCGATFKPVRKCKTHDSMSGAGRATAATGQLVGS 114
Query: 304 RRAEPGPGEVRTAEDASRTGAVP-----VKTVPL-------------------------- 332
PG R + +P K++P
Sbjct: 115 ASFPGSPGSRRMIDYRHFVPQMPFVPAVAKSIPRKRISLKRPKKCFRNLFHIRRNKTEDL 174
Query: 333 --VDSEGGSGRAPAAP-DP------ASVDPPSDPSADRIC------------------LM 365
+ +EG S +P P DP A + P P D +C +
Sbjct: 175 ASLAAEGKSLPSPGDPSDPGGRRSKAFLPPGEGPGLDGLCQDLLDSELLADASFGLCRAL 234
Query: 366 FSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPA-----LSKKNPGVVAYQG 420
DV SL+SFDSLTGCG++ AD E + PS + + GP P L K P QG
Sbjct: 235 CEDVASLQSFDSLTGCGEVFAD--ESSVPSLELN-EGPESPTQAAQGLESKVPRG-PLQG 290
Query: 421 GGEEMASPDEVDDTYLQEFWDMLSQTEEQ------GP--EPQEGAAKVAAALETKVVPET 472
E++ASP + + + FWD ++++ Q GP +G + + L+T + E
Sbjct: 291 SVEQLASPAQNEASDFTRFWDSVNRSVRQQQRALLGPWLSGPQGTDRDQSRLDTAGLAEL 350
Query: 473 PK-DTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPG 531
P R + ASS+ + P+ EQ E V SDEGY+DS +PG
Sbjct: 351 PLCPCRDPRSGSKASSI----------------DTGTPKSEQPESVSTSDEGYYDSFSPG 394
Query: 532 PEED----SSSSGKKAGIPRDSYSGDALYDLYADPDGSP 566
EED S A PRDSYSGDALY+L+ DP P
Sbjct: 395 LEEDKKEAESPGTPAATFPRDSYSGDALYELFHDPSEGP 433
>gi|157427667 hypothetical protein LOC205147 [Homo sapiens]
Length = 861
Score = 112 bits (281), Expect = 8e-25
Identities = 131/459 (28%), Positives = 183/459 (39%), Gaps = 112/459 (24%)
Query: 191 KRGLRGLFSGMRW-HRK--DKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAARE 247
KRG + S ++ H K D A A A EG P +LPG E+ P+A+
Sbjct: 4 KRGKTFIKSSLQVSHEKPPDPAAVAAAREGTGPWS--VLPGGQQRPHS---EKGPQASPS 58
Query: 248 PEE----PSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGH 303
+E P++ A DP G PA A P R C+ + ++ G A G
Sbjct: 59 AQEYDRCPNKGAQLDPKGGPAA----LCGATFKPVRKCKTHDSMSGAGRATAATGQLVGS 114
Query: 304 RRAEPGPGEVRTAEDASRTGAVP-----VKTVPL-------------------------- 332
PG R + +P K++P
Sbjct: 115 ASFPGSPGSRRMIDYRHFVPQMPFVPAVAKSIPRKRISLKRPKKCFRNLFHIRRNKTEDL 174
Query: 333 --VDSEGGSGRAPAAP-DP------ASVDPPSDPSADRIC------------------LM 365
+ +EG S +P P DP A + P P D +C +
Sbjct: 175 ASLAAEGKSLPSPGDPSDPGGRRSKAFLPPGEGPGLDGLCQDLLDSELLADASFGLCRAL 234
Query: 366 FSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPA-----LSKKNPGVVAYQG 420
DV SL+SFDSLTGCG++ AD E + PS + + GP P L K P QG
Sbjct: 235 CEDVASLQSFDSLTGCGEVFAD--ESSVPSLELN-EGPESPTQAAQGLESKVPRG-PLQG 290
Query: 421 GGEEMASPDEVDDTYLQEFWDMLSQTEEQ------GP--EPQEGAAKVAAALETKVVPET 472
E++ASP + + + FWD ++++ Q GP +G + + L+T + E
Sbjct: 291 SVEQLASPAQNEASDFTRFWDSVNRSVRQQQRALLGPWLSGPQGTDRDQSRLDTAGLAEL 350
Query: 473 PK-DTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPG 531
P R + ASS+ + P+ EQ E V SDEGY+DS +PG
Sbjct: 351 PLCPCRDPRSGSKASSI----------------DTGTPKSEQPESVSTSDEGYYDSFSPG 394
Query: 532 PEED----SSSSGKKAGIPRDSYSGDALYDLYADPDGSP 566
EED S A PRDSYSGDALY+L+ DP P
Sbjct: 395 LEEDKKEAESPGTPAATFPRDSYSGDALYELFHDPSEGP 433
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 55.8 bits (133), Expect = 1e-07
Identities = 96/349 (27%), Positives = 119/349 (34%), Gaps = 49/349 (14%)
Query: 89 KGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEE--PRGGGDSGGGG-----GGRPNPGP 141
KGD + GP G + G V + R + P G G G G NPGP
Sbjct: 857 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP 916
Query: 142 PRAAGPGG----GSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGL 197
P GP G S + L+ KGEP D +G + G +GL
Sbjct: 917 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 976
Query: 198 FSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAP- 256
R + E PG LPG S E K+ P A+ + P P
Sbjct: 977 AG----QRGIVGLPGQRGERGFPG----LPG---PSGEPGKQGAPGASGDRGPPGPVGPP 1025
Query: 257 --RDPAGEPAGGEEVPAPADRAPARSCREAEGL-AHPGDTGARGEDAAGHRRAEPGP-GE 312
PAGEP G E AD P R A G+ G+TGA G A PGP G
Sbjct: 1026 GLTGPAGEP--GREGSPGADGPPGRD--GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1081
Query: 313 VRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPA-SVDPPSDPSADRICLMFSDVTS 371
D GA +G G P+ P A + P P D+
Sbjct: 1082 TGKQGDRGEAGA-----------QGPMG--PSGPAGARGIQGPQGPRGDKGEAGEPGERG 1128
Query: 372 LKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQG 420
LK TG + GPS D+ GP P+ + PG V G
Sbjct: 1129 LKGHRGFTG----LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSG 1173
Score = 46.2 bits (108), Expect = 1e-04
Identities = 98/415 (23%), Positives = 127/415 (30%), Gaps = 70/415 (16%)
Query: 36 TGTLAADMDLHCDCAAETPAAEPPSGK--------INKAAFKLFKKRKSG--GTMPSIFG 85
TGT+ D D+ C+ + + E P G+ + A+ + K + G G + I G
Sbjct: 59 TGTVLCD-DIICEDVKDCLSPEIPFGECCPICPTDLATASGQPGPKGQKGEPGDIKDIVG 117
Query: 86 VKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEP--RGGGDSGGGGGGRPNPGPPR 143
K G GP G R G + G K P RG G G PGPP
Sbjct: 118 PK--GPPGPQGPAGEQGPRGDRG-------DKGEKGAPGPRGRDGEPGTPGNPGPPGPPG 168
Query: 144 AAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRW 203
GP G L + A+ F KAGG Q ++G M
Sbjct: 169 PPGPPG--LGGNFAAQMAGGFD------------------EKAGGAQLGVMQGPMGPMGP 208
Query: 204 HRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGE- 262
A A +G G PG S P +P + + AGE
Sbjct: 209 RGPPGPAGAPGPQGFQGNPG--EPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGER 266
Query: 263 ----PAGGEEVPAPADRAPARSCREAEGL----AHPGDTGARGEDAAGHRRAEPGP-GEV 313
P G P + R GL G G +GE + PGP G
Sbjct: 267 GPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPR 326
Query: 314 RTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSADRICLMFSDVTSLK 373
+ RTG + G G+ A P V P P F K
Sbjct: 327 GLPGERGRTGPAGA-----AGARGNDGQPGPAGPPGPVGPAGGPG-------FPGAPGAK 374
Query: 374 SFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASP 428
TG E GP + PG PA + NPG G +P
Sbjct: 375 GEAGPTGA----RGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 425
Score = 42.4 bits (98), Expect = 0.001
Identities = 103/409 (25%), Positives = 128/409 (31%), Gaps = 81/409 (19%)
Query: 7 RGGGGAVSERGGAGASVGVCRRKAEAGAGT-GTLAADMDLHCDCAAETPAAEPPSGKINK 65
RG G ERG GA + + G GT D A P A+ P G
Sbjct: 698 RGERGFPGERGSPGA------QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 751
Query: 66 AAFKLFKKRKSGGTMPSIFGVK-NKGDGKSSGPTGLVRSRTHDGLAEVL-----VLESGR 119
+R + G I G K ++GD GP G GL + +G
Sbjct: 752 PG-----ERGAAG----IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGE 802
Query: 120 KEE-----PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSE 174
K E P G + G G R GPP AG G A +K
Sbjct: 803 KGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA 862
Query: 175 NGKGEPVDA-------SKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILP 227
G P A G K RG +G + R + G PG P
Sbjct: 863 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN-PGP----P 917
Query: 228 GSLTASLECVKEETPRAAR-------EPEEPSQDAPRDPAGE--------PAGGEEVPAP 272
G S ++ P+ AR EP P P GE P+G E P P
Sbjct: 918 GPPGPS----GKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP 973
Query: 273 ADRAPARSC---------REAEGLAHP-GDTGARGEDAAGHRRAEPG----PGEVRTAED 318
A R R GL P G+ G +G A R PG PG A +
Sbjct: 974 QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGE 1033
Query: 319 ASRTGAVPVKTVPLVD---------SEGGSGRAPAAPDPASVDPPSDPS 358
R G+ P D E G+ AP AP P P+ P+
Sbjct: 1034 PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPT 1082
Score = 41.6 bits (96), Expect = 0.002
Identities = 85/313 (27%), Positives = 107/313 (34%), Gaps = 54/313 (17%)
Query: 124 RGGGDSGGGGGGRPNPGPPRAAGP-------GGGSLASSSVAKSHSFFSLLKKNGRSENG 176
RG G G R N G P AGP GG + AK + + + ++
Sbjct: 332 RGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGP 391
Query: 177 KGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPG-GGLILPGSLTASLE 235
+GEP G G G G+ + A A PG G P T L
Sbjct: 392 RGEPGTPGSPGPAGASGNPGT-DGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLG 450
Query: 236 CVKEETPRAAREPEEPSQDAPRDPAGE--PAGGEEVPAPADRAPARSCREAEGLAHPGDT 293
K +T EP + P GE PAG + P PA R R G G
Sbjct: 451 -PKGQT----GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPG--GVGPI 503
Query: 294 GARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDP 353
G GE A R PG + G K P G SG A P A+ DP
Sbjct: 504 GPPGERGAPGNRGFPG-----------QDGLAGPKGAP--GERGPSGL--AGPKGANGDP 548
Query: 354 --PSDPSADRICLMFSDVTSLKSFDSLTG-CGDIIADQEEEAGPS---CDKHVPGPGKPA 407
P +P L LTG GD A + + GPS + PGP P
Sbjct: 549 GRPGEP-------------GLPGARGLTGRPGD--AGPQGKVGPSGAPGEDGRPGPPGPQ 593
Query: 408 LSKKNPGVVAYQG 420
++ PGV+ + G
Sbjct: 594 GARGQPGVMGFPG 606
Score = 39.3 bits (90), Expect = 0.012
Identities = 69/281 (24%), Positives = 91/281 (32%), Gaps = 47/281 (16%)
Query: 90 GDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGG--GGRPNPGPPRAAGP 147
G S GP G + DG+ G K G +G G G R PGP A GP
Sbjct: 396 GTPGSPGPAGASGNPGTDGIP-------GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP 448
Query: 148 GG--GSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDA-SKAGGKQKRGLRGLFSGMR-- 202
G G +A ++ + E G P A AG + KRG RG G+
Sbjct: 449 LGPKGQTGEPGIAGFKG-----EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 503
Query: 203 -------------WHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE-TPRAAREP 248
+ +D A + A G GL P E P A
Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 563
Query: 249 EEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAEP 308
P P+ G E P P + + + PG GA GE
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGE---------- 613
Query: 309 GPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPA 349
PG+ A + GA ++ +P D E G+ P PA
Sbjct: 614 -PGK---AGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA 650
Score = 36.2 bits (82), Expect = 0.10
Identities = 59/241 (24%), Positives = 78/241 (32%), Gaps = 21/241 (8%)
Query: 124 RGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDA 183
RG + G G + PGPP G GG V L+ G +G P +
Sbjct: 653 RGEQGAPGPSGFQGLPGPPGPPGE-GGKPGDQGVPGEAGAPGLVGPRGE----RGFPGER 707
Query: 184 SKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAE--GRAPGGGLILPGSLTASLECVKEET 241
G + +G RGL G K A A + P G +PG A+
Sbjct: 708 GSPGAQGLQGPRGL-PGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA-------- 758
Query: 242 PRAAREPEEPSQDAPRDPAGEPA--GGEEVPAP-ADRAPARSCREAEGLAHPGDTGARGE 298
A + + P G P GG + P PA + E + PG G+ G
Sbjct: 759 -GIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 817
Query: 299 DAAGHRRAEPG-PGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDP 357
A R E G PG A G K + G AP P+ P P
Sbjct: 818 RGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP 877
Query: 358 S 358
+
Sbjct: 878 T 878
Score = 30.8 bits (68), Expect = 4.2
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVA 158
PRG G G NPGPP GP G + S+ A
Sbjct: 1189 PRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFA 1224
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 55.8 bits (133), Expect = 1e-07
Identities = 96/349 (27%), Positives = 119/349 (34%), Gaps = 49/349 (14%)
Query: 89 KGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEE--PRGGGDSGGGG-----GGRPNPGP 141
KGD + GP G + G V + R + P G G G G NPGP
Sbjct: 788 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP 847
Query: 142 PRAAGPGG----GSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGL 197
P GP G S + L+ KGEP D +G + G +GL
Sbjct: 848 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 907
Query: 198 FSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAP- 256
R + E PG LPG S E K+ P A+ + P P
Sbjct: 908 AG----QRGIVGLPGQRGERGFPG----LPG---PSGEPGKQGAPGASGDRGPPGPVGPP 956
Query: 257 --RDPAGEPAGGEEVPAPADRAPARSCREAEGL-AHPGDTGARGEDAAGHRRAEPGP-GE 312
PAGEP G E AD P R A G+ G+TGA G A PGP G
Sbjct: 957 GLTGPAGEP--GREGSPGADGPPGRD--GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1012
Query: 313 VRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPA-SVDPPSDPSADRICLMFSDVTS 371
D GA +G G P+ P A + P P D+
Sbjct: 1013 TGKQGDRGEAGA-----------QGPMG--PSGPAGARGIQGPQGPRGDKGEAGEPGERG 1059
Query: 372 LKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQG 420
LK TG + GPS D+ GP P+ + PG V G
Sbjct: 1060 LKGHRGFTG----LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSG 1104
Score = 43.9 bits (102), Expect = 5e-04
Identities = 83/352 (23%), Positives = 101/352 (28%), Gaps = 57/352 (16%)
Query: 89 KGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEP--RGGGDSGGGGGGRPNPGPPRAAG 146
KG GP G R G + G K P RG G G PGPP G
Sbjct: 50 KGPPGPQGPAGEQGPRGDRG-------DKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPG 102
Query: 147 PGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRK 206
P G L + A+ F KAGG Q ++G M
Sbjct: 103 PPG--LGGNFAAQMAGGFD------------------EKAGGAQLGVMQGPMGPMGPRGP 142
Query: 207 DKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGE---- 262
A A +G G PG S P +P + + AGE
Sbjct: 143 PGPAGAPGPQGFQGNPG--EPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP 200
Query: 263 -PAGGEEVPAPADRAPARSCREAEGL----AHPGDTGARGEDAAGHRRAEPGP-GEVRTA 316
P G P + R GL G G +GE + PGP G
Sbjct: 201 GPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 260
Query: 317 EDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSADRICLMFSDVTSLKSFD 376
+ RTG + G G+ A P V P P F K
Sbjct: 261 GERGRTGPAGA-----AGARGNDGQPGPAGPPGPVGPAGGPG-------FPGAPGAKGEA 308
Query: 377 SLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASP 428
TG E GP + PG PA + NPG G +P
Sbjct: 309 GPTGA----RGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 356
Score = 42.4 bits (98), Expect = 0.001
Identities = 103/409 (25%), Positives = 128/409 (31%), Gaps = 81/409 (19%)
Query: 7 RGGGGAVSERGGAGASVGVCRRKAEAGAGT-GTLAADMDLHCDCAAETPAAEPPSGKINK 65
RG G ERG GA + + G GT D A P A+ P G
Sbjct: 629 RGERGFPGERGSPGA------QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 682
Query: 66 AAFKLFKKRKSGGTMPSIFGVK-NKGDGKSSGPTGLVRSRTHDGLAEVL-----VLESGR 119
+R + G I G K ++GD GP G GL + +G
Sbjct: 683 PG-----ERGAAG----IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGE 733
Query: 120 KEE-----PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSE 174
K E P G + G G R GPP AG G A +K
Sbjct: 734 KGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA 793
Query: 175 NGKGEPVDA-------SKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILP 227
G P A G K RG +G + R + G PG P
Sbjct: 794 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN-PGP----P 848
Query: 228 GSLTASLECVKEETPRAAR-------EPEEPSQDAPRDPAGE--------PAGGEEVPAP 272
G S ++ P+ AR EP P P GE P+G E P P
Sbjct: 849 GPPGPS----GKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP 904
Query: 273 ADRAPARSC---------REAEGLAHP-GDTGARGEDAAGHRRAEPG----PGEVRTAED 318
A R R GL P G+ G +G A R PG PG A +
Sbjct: 905 QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGE 964
Query: 319 ASRTGAVPVKTVPLVD---------SEGGSGRAPAAPDPASVDPPSDPS 358
R G+ P D E G+ AP AP P P+ P+
Sbjct: 965 PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPT 1013
Score = 41.6 bits (96), Expect = 0.002
Identities = 85/313 (27%), Positives = 107/313 (34%), Gaps = 54/313 (17%)
Query: 124 RGGGDSGGGGGGRPNPGPPRAAGP-------GGGSLASSSVAKSHSFFSLLKKNGRSENG 176
RG G G R N G P AGP GG + AK + + + ++
Sbjct: 263 RGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGP 322
Query: 177 KGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPG-GGLILPGSLTASLE 235
+GEP G G G G+ + A A PG G P T L
Sbjct: 323 RGEPGTPGSPGPAGASGNPGT-DGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLG 381
Query: 236 CVKEETPRAAREPEEPSQDAPRDPAGE--PAGGEEVPAPADRAPARSCREAEGLAHPGDT 293
K +T EP + P GE PAG + P PA R R G G
Sbjct: 382 -PKGQT----GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPG--GVGPI 434
Query: 294 GARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDP 353
G GE A R PG + G K P G SG A P A+ DP
Sbjct: 435 GPPGERGAPGNRGFPG-----------QDGLAGPKGAP--GERGPSGL--AGPKGANGDP 479
Query: 354 --PSDPSADRICLMFSDVTSLKSFDSLTG-CGDIIADQEEEAGPS---CDKHVPGPGKPA 407
P +P L LTG GD A + + GPS + PGP P
Sbjct: 480 GRPGEP-------------GLPGARGLTGRPGD--AGPQGKVGPSGAPGEDGRPGPPGPQ 524
Query: 408 LSKKNPGVVAYQG 420
++ PGV+ + G
Sbjct: 525 GARGQPGVMGFPG 537
Score = 39.3 bits (90), Expect = 0.012
Identities = 69/281 (24%), Positives = 91/281 (32%), Gaps = 47/281 (16%)
Query: 90 GDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGG--GGRPNPGPPRAAGP 147
G S GP G + DG+ G K G +G G G R PGP A GP
Sbjct: 327 GTPGSPGPAGASGNPGTDGIP-------GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP 379
Query: 148 GG--GSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDA-SKAGGKQKRGLRGLFSGMR-- 202
G G +A ++ + E G P A AG + KRG RG G+
Sbjct: 380 LGPKGQTGEPGIAGFKG-----EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 434
Query: 203 -------------WHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE-TPRAAREP 248
+ +D A + A G GL P E P A
Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 494
Query: 249 EEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAEP 308
P P+ G E P P + + + PG GA GE
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGE---------- 544
Query: 309 GPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPA 349
PG+ A + GA ++ +P D E G+ P PA
Sbjct: 545 -PGK---AGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA 581
Score = 36.2 bits (82), Expect = 0.10
Identities = 59/241 (24%), Positives = 78/241 (32%), Gaps = 21/241 (8%)
Query: 124 RGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDA 183
RG + G G + PGPP G GG V L+ G +G P +
Sbjct: 584 RGEQGAPGPSGFQGLPGPPGPPGE-GGKPGDQGVPGEAGAPGLVGPRGE----RGFPGER 638
Query: 184 SKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAE--GRAPGGGLILPGSLTASLECVKEET 241
G + +G RGL G K A A + P G +PG A+
Sbjct: 639 GSPGAQGLQGPRGL-PGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA-------- 689
Query: 242 PRAAREPEEPSQDAPRDPAGEPA--GGEEVPAP-ADRAPARSCREAEGLAHPGDTGARGE 298
A + + P G P GG + P PA + E + PG G+ G
Sbjct: 690 -GIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 748
Query: 299 DAAGHRRAEPG-PGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDP 357
A R E G PG A G K + G AP P+ P P
Sbjct: 749 RGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP 808
Query: 358 S 358
+
Sbjct: 809 T 809
Score = 30.8 bits (68), Expect = 4.2
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVA 158
PRG G G NPGPP GP G + S+ A
Sbjct: 1120 PRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFA 1155
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 53.5 bits (127), Expect = 6e-07
Identities = 85/332 (25%), Positives = 110/332 (33%), Gaps = 53/332 (15%)
Query: 124 RGGGDSGGGGGGRPN----PGPPRAAG-PGGGSLASSSVAKSHSFFSLLKKNGRSENGKG 178
+ G D G GRP PGP A G PG L + S K + KG
Sbjct: 228 KNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKG 287
Query: 179 EPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEG----------RAPGGGLILPG 228
EP + G + G RGL A A +G P G PG
Sbjct: 288 EPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPG 347
Query: 229 SLTASLECVKEETPRAAREPE----EPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREA 284
++ A E + PR + P+ EP P AG PAG P + A+ A
Sbjct: 348 AVGAKGE-AGPQGPRGSEGPQGVRGEPGPPGPAGAAG-PAGN---PGADGQPGAKGANGA 402
Query: 285 EGLA-HPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAP 343
G+A PG GARG PGP ++ GA S+G +G A
Sbjct: 403 PGIAGAPGFPGARGPSGPQGPGGPPGP-----KGNSGEPGA--------PGSKGDTG-AK 448
Query: 344 AAPDPASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSC-----DK 398
P P V P P+ + + G + E GP
Sbjct: 449 GEPGPVGVQGPPGPAGEE---------GKRGARGEPGPTGLPGPPGERGGPGSRGFPGAD 499
Query: 399 HVPGPGKPALSKKNPGVVAYQGGGEEMASPDE 430
V GP PA + +PG +G E P E
Sbjct: 500 GVAGPKGPAGERGSPGPAGPKGSPGEAGRPGE 531
Score = 52.4 bits (124), Expect = 1e-06
Identities = 142/580 (24%), Positives = 176/580 (30%), Gaps = 75/580 (12%)
Query: 44 DLHCDCAAETPAAEPPSGKINKAAFKLFKKRKSGGTMPSIFGVKN-KGDGKSSGPTGLVR 102
D+ CD P AE P G+ + T GV+ KGD GP G
Sbjct: 72 DVICDETKNCPGAEVPEGE----CCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAG 127
Query: 103 SRTHDGLAEVLVLESGRKEEPRGGGDSGGGG---------------GGRPNPGPPRAAGP 147
DG+ L G P G G GG GG PGP +GP
Sbjct: 128 PPGRDGIPGQPGLP-GPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGP 186
Query: 148 GGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKD 207
G L A F + GEP + +G RG G G +
Sbjct: 187 RG--LPGPPGAPGPQGF---------QGPPGEPGEPGASGPMGPRGPPGP-PGKNGDDGE 234
Query: 208 KRAKAEAAEGRAPG--GGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPAG 265
E PG G LPG TA L +K + + + P P GEP
Sbjct: 235 AGKPGRPGERGPPGPQGARGLPG--TAGLPGMKGHRGFSGLDGAK-GDAGPAGPKGEPGS 291
Query: 266 GEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAV 325
E AP P E PG GARG D A PGP A GAV
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGP--TGPAGPPGFPGAV 349
Query: 326 PVKTVPLVD----SEGGSG--RAPAAPDPA-SVDPPSDPSADRICLMFSDVTSLKSFDSL 378
K SEG G P P PA + P +P AD K +
Sbjct: 350 GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD-------GQPGAKGANGA 402
Query: 379 TGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQE 438
G IA G GPG P K N G E +P DT +
Sbjct: 403 PG----IAGAPGFPGARGPSGPQGPGGPPGPKGNSG---------EPGAPGSKGDTGAKG 449
Query: 439 FWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKD-----TRCVEAAKDASSVKRRRL 493
+ GP +EG +P P + +R A + K
Sbjct: 450 EPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAG 509
Query: 494 NR-IPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSG 552
R P PK P + + G+P + +PGP+ + G R G
Sbjct: 510 ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPG 569
Query: 553 DALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTI 592
A G P P G E + R P PG +
Sbjct: 570 PPGARGQAGVMGFPG--PKGAAGEPGKAGERGVPGPPGAV 607
Score = 42.4 bits (98), Expect = 0.001
Identities = 69/263 (26%), Positives = 81/263 (30%), Gaps = 39/263 (14%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGG-----------------GSLASSSVAKSHSFFS 165
P+G G G R PGPP A GP G G A S F
Sbjct: 585 PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQG 644
Query: 166 LLKKNG-RSENGK----GEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRA- 219
L G E GK G P D G RG RG F G R + G A
Sbjct: 645 LPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG-FPGER--------GVQGPPGPAG 695
Query: 220 PGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPA----GGEEVPAPADR 275
P G PG+ A + P + P R AG P G+ P AD
Sbjct: 696 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADG 755
Query: 276 APAR-SCREAEG-LAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLV 333
+P + R G + PG GA G+ GP R A R P
Sbjct: 756 SPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGA-PGDRGEPGPPGPAGFA 814
Query: 334 DSEGGSGRAPAAPDPASVDPPSD 356
G G+ A +P D
Sbjct: 815 GPPGADGQPGAKGEPGDAGAKGD 837
Score = 35.4 bits (80), Expect = 0.17
Identities = 84/371 (22%), Positives = 108/371 (29%), Gaps = 43/371 (11%)
Query: 90 GDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRAAGPGG 149
GD + GP+G R G E V PRG + G G + + G P A G G
Sbjct: 665 GDLGAPGPSGARGERGFPG--ERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG 722
Query: 150 GSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLF----------- 198
+ + K R + G P A + GK G+RGL
Sbjct: 723 APGLQGMPGERGAAGLPGPKGDRGDAG---PKGADGSPGKD--GVRGLTGPIGPPGPAGA 777
Query: 199 ---------SGMRWHRKDKRAKAEAAEGRAPG-GGLILPGSLTASLECVKEETPRAAREP 248
SG + A + E PG G P E A+
Sbjct: 778 PGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGD 837
Query: 249 EEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAEP 308
P P PAG P V AP + S PG G G P
Sbjct: 838 AGPP--GPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 895
Query: 309 GP----------GEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPS 358
GP G A R G V P E GS A P +
Sbjct: 896 GPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIA 955
Query: 359 ADRICLMFSDVTSLKSFDSLTG-CGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVA 417
R + + F L G G+ ++ +G S ++ PGP P PG
Sbjct: 956 GQRGVVGLPGQRGERGFPGLPGPSGE--PGKQGPSGASGERGPPGPMGPPGLAGPPGESG 1013
Query: 418 YQGGGEEMASP 428
+G SP
Sbjct: 1014 REGAPGAEGSP 1024
Score = 32.0 bits (71), Expect = 1.9
Identities = 77/319 (24%), Positives = 92/319 (28%), Gaps = 56/319 (17%)
Query: 6 SRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEP-PSGKIN 64
+RG G E G G + A+ G D D PA P G I
Sbjct: 795 ARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIG 854
Query: 65 KAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPR 124
K + P G G GP G + G E G+ PR
Sbjct: 855 NVGAPGAKGARGSAGPPGATGFP--GAAGRVGPPGPSGNAGPPGPPGPAGKEGGKG--PR 910
Query: 125 GGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDAS 184
G G G PGPP AG G A G P
Sbjct: 911 GETGPAGRPGEVGPPGPPGPAGEKGSPGADGPA--------------------GAPGTPG 950
Query: 185 KAGGKQKRGLRGLFSGMRWHR-----------KDKRAKAEAAEGRAPGGGLILPGSLTAS 233
G +RG+ GL G R R K+ + A+ R P G + PG
Sbjct: 951 PQGIAGQRGVVGL-PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPP 1009
Query: 234 LECVKEETPRAAREPEEPSQDAPRDPAGE--PAGGEEVPAPADRAPARSCREAEGLAHPG 291
E +E P A P + GE PAG P A AP PG
Sbjct: 1010 GESGREGAPGAEGSPGRDGSPGAKGDRGETGPAG----PPGAPGAPGA----------PG 1055
Query: 292 DTGARGEDAAGHRRAEPGP 310
G G+ R E GP
Sbjct: 1056 PVGPAGKSGD---RGETGP 1071
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 53.1 bits (126), Expect = 8e-07
Identities = 117/496 (23%), Positives = 172/496 (34%), Gaps = 133/496 (26%)
Query: 118 GRKEEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGK 177
G +E PRG GGG P+ GP A G+ +G +E +
Sbjct: 46 GAEEAPRGAAAVKEAGGGGPDRGPEAEARGTRGA------------------HGETEAEE 87
Query: 178 GEPVDAS-KAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLEC 236
G P A GG++ G A+ EG +PG G E
Sbjct: 88 GAPEGAEVPQGGEETSG------------------AQQVEGASPGRG----AQGEPRGEA 125
Query: 237 VKEETPRAAREPEEPSQDAPRDPAGEPAG--GEEVPAPAD-------RAPARSCREAEGL 287
+E AA E +E ++ P P G +G G+ V A PA EAEG
Sbjct: 126 QREPEDSAAPERQEEAEQRPEVPEGSASGEAGDSVDAEGPLGDNIEAEGPAGDSVEAEG- 184
Query: 288 AHPGDTGARGEDAAGHRRAEPGP-GEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAP 346
GD+ E AG GP G+ AE + VD+EG G + A
Sbjct: 185 -RVGDS-VDAEGPAGDSVDAEGPLGDNIQAEGPAGDS---------VDAEGRVGDSVDAE 233
Query: 347 DPA--SVD---------PPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPS 395
PA SVD DP+ D + ++ GD + + E AG S
Sbjct: 234 GPAGDSVDAEGRVGDSVEAGDPAGDGV-------------EAGVPAGDSV-EAEGPAGDS 279
Query: 396 CDKHVPG------PGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQ 449
D P G+P + G ++ Q E+A+ + + + WD + E
Sbjct: 280 MDAEGPAGRARRVSGEP--QQSGDGSLSPQAEAIEVAAGESAGRSPGELAWDAAEEAEVP 337
Query: 450 GPEPQEGAAKVAAALETKVVPETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHP 509
G + E AA P D R +A +D + P++EP
Sbjct: 338 GVKGSEEAA--------------PGDAR-ADAGEDR------------VGDGPQQEPGED 370
Query: 510 EKEQQEGVPNSDEGYWDSTTPGPEEDSSSS------GKKAGIPRDSYSGDALYDLYADPD 563
E+ ++ S EG + G EE+S S + A P S + A+
Sbjct: 371 EERRE----RSPEGPREEEAAGGEEESPDSSPHGEASRGAAEPEAQLSNHLAEEGPAEGS 426
Query: 564 GSPATLPGGKDNEETS 579
G A + G +++ E S
Sbjct: 427 GEAARVNGRREDGEAS 442
Score = 30.0 bits (66), Expect = 7.2
Identities = 32/91 (35%), Positives = 37/91 (40%), Gaps = 27/91 (29%)
Query: 256 PRDPAGEPAGGEEVPAP-ADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAEPGPGEVR 314
P A P G EVPAP A+R PG+ GA G +A G +E
Sbjct: 7 PEGVAPGPQGPPEVPAPLAER--------------PGEPGAAGGEAEGPEGSE------- 45
Query: 315 TAEDASRTGAVPVKTVPLVDSEGGSGRAPAA 345
AE+A R GA VK GG R P A
Sbjct: 46 GAEEAPR-GAAAVKEA----GGGGPDRGPEA 71
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 52.8 bits (125), Expect = 1e-06
Identities = 147/671 (21%), Positives = 225/671 (33%), Gaps = 126/671 (18%)
Query: 11 GAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPSGKINKAAFKL 70
G E G GA +G + G G AA + + + PA+ P G+
Sbjct: 139 GGRYEHPGLGA-LGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCF--- 194
Query: 71 FKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVR--SRTHDGLAEVLVLESGRKEEPR---- 124
+ GG G+ + ++G G + +H+G P
Sbjct: 195 ---DQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGG 251
Query: 125 --GGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
GGG GGG GG G A G G G++A+++ A + + G G
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAA----------AAAGGGGGGGYG 301
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAK--AEAAEGRAPGGGLIL------PGSLTASL 234
S AG R GM A ++AA G A GG P T +L
Sbjct: 302 GSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTL 361
Query: 235 ECVKEETPRAARE-----PEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAH 289
+ R PE S AP P +P + A A A A + A G+
Sbjct: 362 NQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQP----QSQAAAAGAAAGGQQAAAGMGL 417
Query: 290 PGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAP-DP 348
D GA+ + A P + + + P T+ GR+ +P DP
Sbjct: 418 GKDMGAQ------YAAASPAWAAAQQRSHPAMSPGTPGPTM---------GRSQGSPMDP 462
Query: 349 ASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAG--PSCDKHVPGPGK- 405
+ P L G G Q +++ P PGP +
Sbjct: 463 MVMKRP----------------------QLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRY 500
Query: 406 -PALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAAL 464
+ + PG +A G + D D T+ + FW M Q +QG +
Sbjct: 501 PIGIQGRTPGAMA---GMQYPQQQDSGDATWKETFWLMPPQYGQQGVSGYCQQGQQPYYS 557
Query: 465 ETKVVPETPKDTRCV--------EAAKDASSVKRRRLNRIPIEPHPKEEPKHP-----EK 511
+ P P + + + +D S ++ P+ P +P H ++
Sbjct: 558 QQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAP---GKPNHEDLNLIQQ 614
Query: 512 EQQEGVPNSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSGDALYDLYA--DPDGSP--A 567
E+ +P+ G D G E SS+ +G S GD + P SP +
Sbjct: 615 ERPSSLPDL-SGSIDDLPTGTEATLSSAVSASG--STSSQGDQSNPAQSPFSPHASPHLS 671
Query: 568 TLPGGKDNEET-----SSLSRLKPVSPGTITCPLRTPGSLLKDSKIPISIKHLTNLPSSH 622
++PGG S+ SR P+SP +I PG S++P + SSH
Sbjct: 672 SIPGGPSPSPVGSPVGSNQSRSGPISPASI------PG-----SQMPPQPPGSQSESSSH 720
Query: 623 PVVHQQPSRSE 633
P + Q P E
Sbjct: 721 PALSQSPMPQE 731
Score = 29.6 bits (65), Expect = 9.4
Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 9/188 (4%)
Query: 396 CDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQE 455
C K + G + +KK + G ++ + Y+Q + + E P E
Sbjct: 1048 CVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPE 1107
Query: 456 GAAKVAAALETKVVPETPKDTRCVEAAKDASSVKRRRLNRIPIE---------PHPKEEP 506
+ + K+ P +P ++ ++ + S + +P + PH + P
Sbjct: 1108 VFSTGDTKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTP 1167
Query: 507 KHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSGDALYDLYADPDGSP 566
+ V + DS+ P + ++ + G+ G Y+ DP G
Sbjct: 1168 MQGGRSSTISVHDPFSDVSDSSFPKRNSMTPNAPYQQGMSMPDVMGRMPYEPNKDPFGGM 1227
Query: 567 ATLPGGKD 574
+PG +
Sbjct: 1228 RKVPGSSE 1235
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 52.0 bits (123), Expect = 2e-06
Identities = 88/334 (26%), Positives = 109/334 (32%), Gaps = 67/334 (20%)
Query: 126 GGDSGGGGGGRPN----PGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNG---------- 171
G D G GRP PGPP GP G + K H F +NG
Sbjct: 228 GKDGESGRPGRPGERGLPGPPGIKGPAG--IPGFPGMKGHRGFD--GRNGEKGETGAPGL 283
Query: 172 RSENG----KGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPG--GGLI 225
+ ENG G P G +RG GL G R + A+ + PG G
Sbjct: 284 KGENGLPGENGAPGPMGPRGAPGERGRPGL-PGAAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 226 LPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAG------------EPAG-GEEVPAP 272
PGS A E +P + P + + P+ AG P G GE PA
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG 402
Query: 273 ADRAPA-RSCREAEGLAH----PGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPV 327
AP R G A PG G GE + EPGP R G +
Sbjct: 403 IPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGER--------GEAGI 454
Query: 328 KTVPLVDSEGGSGRAPAAPDPASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIAD 387
VP E G +P P + P A + F G I
Sbjct: 455 PGVPGAKGEDGKDGSPGEPGANGL-----PGA-------AGERGAPGFRGPAGPNGIPG- 501
Query: 388 QEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGG 421
E GP+ ++ PGP P + PG GG
Sbjct: 502 ---EKGPAGERGAPGPAGPRGAAGEPGRDGVPGG 532
Score = 50.8 bits (120), Expect = 4e-06
Identities = 116/478 (24%), Positives = 147/478 (30%), Gaps = 52/478 (10%)
Query: 125 GGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDAS 184
G S G G + PG P AGP G ++ S K+G S G P +
Sbjct: 189 GHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPS----GPAGKDGES-GRPGRPGERG 243
Query: 185 KAGGKQKRGLRGL--FSGMRWHRKDKRAKAEAAEGRAPG--GGLILPGSLTASLECVKEE 240
G +G G+ F GM+ HR E E APG G LPG A
Sbjct: 244 LPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRG 303
Query: 241 TPRAAREPEEPSQDAPR--DPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGE 298
P P P R D A G P P A A+G G G+ G
Sbjct: 304 APGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKG--EVGPAGSPGS 361
Query: 299 DAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPS 358
+ A +R EPGP A+ G + P E G P AP P P+
Sbjct: 362 NGAPGQRGEPGPQGHAGAQ--GPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPA 419
Query: 359 ADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAY 418
+ L+ G G E G + K PGP PGV
Sbjct: 420 G------ANGAPGLRG-----GAG--------EPGKNGAKGEPGPRGERGEAGIPGVPGA 460
Query: 419 QGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEG--AAKVAAALETKVVPETPKDT 476
+G + SP E L +GP G K A P P+
Sbjct: 461 KGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGA 520
Query: 477 RCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDS 536
E +D +P P + P P +G P +S PGP S
Sbjct: 521 -AGEPGRDG----------VPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPS 569
Query: 537 SSSGKKAGI----PRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPG 590
G+ + P+ + P G P GK N ET P PG
Sbjct: 570 GPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGK-NGETGPQGPPGPTGPG 626
Score = 44.3 bits (103), Expect = 4e-04
Identities = 95/379 (25%), Positives = 119/379 (31%), Gaps = 68/379 (17%)
Query: 11 GAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPSGKINKAAFKL 70
G ERGG G S G K E G G G D P+G I
Sbjct: 726 GMPGERGGLG-SPGPKGDKGEPG-GPGA---------DGVPGKDGPRGPTGPIGPPGPAG 774
Query: 71 FKKRKSGGTMPSIFGVKN-KGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDS 129
K G P + G+ +G G TG G G+ EP G G+
Sbjct: 775 QPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP-------GQNGEPGGKGER 827
Query: 130 GGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGK 189
G G + GPP AGP GGS + + +G P AG
Sbjct: 828 GAPGE-KGEGGPPGVAGPPGGSGPAGPPGPQ-----------GVKGERGSPGGPGAAGFP 875
Query: 190 QKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPG--GGLILPGSLTASLECVKEETPRA-AR 246
RGL G G + + PG G PGS S P+ A
Sbjct: 876 GARGLPGP-PGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVS-------GPKGDAG 927
Query: 247 EPEEPSQDAPRDPAGEP--------AGGEEVPAPADRAPARSCREAEGLAHPGDTGARGE 298
+P E + P G P G + P R +G+ G++G G
Sbjct: 928 QPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGV--KGESGKPGA 985
Query: 299 DAAGHRRAEPG----PGEVRTAEDASRTGAVPVKTVPLVD-SEGGSG-----------RA 342
+ R PG PG TA + R G +P D S GG G A
Sbjct: 986 NGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGA 1045
Query: 343 PAAPDPASVDPPSDPSADR 361
P P P P+ S DR
Sbjct: 1046 PGHPGPPGPVGPAGKSGDR 1064
Score = 38.5 bits (88), Expect = 0.020
Identities = 61/246 (24%), Positives = 76/246 (30%), Gaps = 53/246 (21%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAG----PGGGSLASSSVAKSHSFFSLLKKNGRSENGKG 178
P G S G G R PGP AG PG + S K + + +G
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARG 414
Query: 179 EPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVK 238
P A G RG G G + + + E E PG +PG+
Sbjct: 415 PPGPAGANGAPGLRGGAG-EPGKNGAKGEPGPRGERGEAGIPG----VPGA--------- 460
Query: 239 EETPRAAREPEEPSQDAPRDPA--GEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGAR 296
+ E+ +P +P G P E AP R PA G G
Sbjct: 461 --------KGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA------------GPNGIP 500
Query: 297 GEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGR--APAAP-DPASVDP 353
GE R PGP R A VP GG G P +P P S
Sbjct: 501 GEKGPAGERGAPGPAGPRGAAGEPGRDGVP----------GGPGMRGMPGSPGGPGSDGK 550
Query: 354 PSDPSA 359
P P +
Sbjct: 551 PGPPGS 556
Score = 38.1 bits (87), Expect = 0.027
Identities = 91/364 (25%), Positives = 116/364 (31%), Gaps = 45/364 (12%)
Query: 7 RGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPSGKINKA 66
RGG G + G G G + EAG G A + D + P A G +
Sbjct: 428 RGGAGEPGKNGAKGEP-GPRGERGEAGI-PGVPGAKGEDGKDGSPGEPGANGLPGAAGER 485
Query: 67 AFKLFKKRKSGGTMPSIFG-VKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRG 125
F+ +P G +G +GP G DG+ + G P G
Sbjct: 486 GAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMR-GMPGSPGG 544
Query: 126 GGDSG-----GGGGGRPNPGPPRAAGP-GGGSLASSSVAKSHSFFSLLKKNGRSENGKGE 179
G G G G PGPP +GP G + K + KNG G G
Sbjct: 545 PGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGND--GAPGKNG-ERGGPGG 601
Query: 180 PVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKE 239
P G + G +G G DK P G LPG+
Sbjct: 602 PGPQGPPGKNGETGPQGP-PGPTGPGGDKGDTGPP----GPQGLQGLPGT---------G 647
Query: 240 ETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGED 299
P +P EP G P G + AP +R P GLA G G RG
Sbjct: 648 GPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGP-------PGLA--GAPGLRG-- 696
Query: 300 AAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDP-ASVDPPSDPS 358
AG E G G G ++ +P GG G +P P P P
Sbjct: 697 GAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMP--GERGGLG----SPGPKGDKGEPGGPG 750
Query: 359 ADRI 362
AD +
Sbjct: 751 ADGV 754
Score = 37.4 bits (85), Expect = 0.045
Identities = 61/256 (23%), Positives = 81/256 (31%), Gaps = 38/256 (14%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGG--GSLASSSVAKSHSFFSLLKKNG----RSENG 176
P+G G G GPP A GP G G + +A G + E+G
Sbjct: 922 PKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESG 981
Query: 177 K-GEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLE 235
K G + + G +GL GL +D ++ GR PG E
Sbjct: 982 KPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS-----PGGKGDRGE 1036
Query: 236 CVKEETPRAAREPEEPS------------QDAPRDPAGEPAGGEEVPAPADRAPARSCRE 283
P A P P + P PAG P AP + P
Sbjct: 1037 NGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR----- 1091
Query: 284 AEGLAHPGDTGARG-EDAAGHRRAEPGPGEVRTAEDASRTGAV----PVKTVPLVDSEGG 338
G+TG RG GHR PG + A + GA+ P V G
Sbjct: 1092 ----GDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147
Query: 339 SGRAPAAPDPASVDPP 354
G+ + P + PP
Sbjct: 1148 PGKDGTSGHPGPIGPP 1163
Score = 35.8 bits (81), Expect = 0.13
Identities = 62/267 (23%), Positives = 79/267 (29%), Gaps = 35/267 (13%)
Query: 118 GRKEEPRGGGDSG--------GGGGGRPNPGPPRAAGPGGGS----LASSSVAKSHSFFS 165
G + P G G +G G G NPGPP +G G A ++ A S
Sbjct: 861 GERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVS 920
Query: 166 LLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFS--------GMRWHRKDKRAKAEAAEG 217
K + KG P G G+ G+ GM R + E
Sbjct: 921 GPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGES 980
Query: 218 RAPGGGLIL-----PGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAP 272
PG + PG + P A EP +D G P
Sbjct: 981 GKPGANGLSGERGPPGP---------QGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGK 1031
Query: 273 ADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPL 332
DR S HPG G G R E GP A + + P P
Sbjct: 1032 GDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR 1091
Query: 333 VDSEGGSGRAPAAPDPASVDPPSDPSA 359
D +G +G AA P +P A
Sbjct: 1092 GD-KGETGERGAAGIKGHRGFPGNPGA 1117
Score = 35.4 bits (80), Expect = 0.17
Identities = 63/250 (25%), Positives = 75/250 (30%), Gaps = 50/250 (20%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
P+G + G G R PG P GP G KNG E G P
Sbjct: 583 PKGNDGAPGKNGERGGPGGPGPQGPPG-------------------KNG--ETGPQGPPG 621
Query: 183 ASKAGGKQ-------KRGLRGLFS-----GMRWHRKDKRAKAEAAEGRAPGGGLILPGSL 230
+ GG + +GL+GL G + K +A APGG G
Sbjct: 622 PTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGG----KGDA 677
Query: 231 TASLECVKEETPRAAREPEEPSQDAPRDP-AGEPAGGEEVPAPADRAPARSCREAE--GL 287
A E P A P P P G+ A G P A P E GL
Sbjct: 678 GAPGE---RGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGL 734
Query: 288 AHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPD 347
PG G +GE PG +D R P+ G G A
Sbjct: 735 GSPGPKGDKGEPGGPGADGVPG-------KDGPRGPTGPIGPPGPAGQPGDKGEGGAPGL 787
Query: 348 PASVDPPSDP 357
P P P
Sbjct: 788 PGIAGPRGSP 797
Score = 33.9 bits (76), Expect = 0.50
Identities = 102/450 (22%), Positives = 128/450 (28%), Gaps = 87/450 (19%)
Query: 124 RGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDA 183
RGG G G + PGP G G + AK ++G+ + GEP
Sbjct: 428 RGGAGEPGKNGAKGEPGPRGERGEAG--IPGVPGAKG--------EDGK-DGSPGEPGAN 476
Query: 184 SKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPR 243
G +RG G F G K A E APG G A+ E ++ P
Sbjct: 477 GLPGAAGERGAPG-FRGPAGPNGIPGEKGPAGERGAPGPA----GPRGAAGEPGRDGVPG 531
Query: 244 AARE---PEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDA 300
P P G P E P P+ + + PG G G
Sbjct: 532 GPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPG 591
Query: 301 AGHRRAEP-GPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSA 359
R P GPG TG +G G D PP
Sbjct: 592 KNGERGGPGGPGPQGPPGKNGETG-----------PQGPPGPTGPGGDKGDTGPPGP--- 637
Query: 360 DRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQ 419
+ L G G GP + PG P K + G
Sbjct: 638 -------------QGLQGLPGTG----------GPPGENGKPGEPGP---KGDAGAPGAP 671
Query: 420 GGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCV 479
GG + +P E L + GPE +GAA P P
Sbjct: 672 GGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAG----------PPGPPGAAGT 721
Query: 480 EAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSS 539
+ +R L P PK + P +GVP D GP +
Sbjct: 722 PGLQGMPG-ERGGLG----SPGPKGDKGEPGGPGADGVPGKD---------GPRGPTGPI 767
Query: 540 GK--KAGIPRDSYSGDAL-YDLYADPDGSP 566
G AG P D G A A P GSP
Sbjct: 768 GPPGPAGQPGDKGEGGAPGLPGIAGPRGSP 797
Score = 30.4 bits (67), Expect = 5.5
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 89 KGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRAAGPG 148
+G SGP G + H G R E RG S G G PGPP A GP
Sbjct: 1139 RGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGE--RGSEGSPGHPGQPGPPGPPGAPGPC 1196
Query: 149 GGSLASSSVA 158
G + ++++A
Sbjct: 1197 CGGVGAAAIA 1206
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 52.0 bits (123), Expect = 2e-06
Identities = 123/457 (26%), Positives = 157/457 (34%), Gaps = 133/457 (29%)
Query: 7 RGGGGAVSERGGAG--ASVGVCRRKAEAG----AGTGTLAADMDLHCDCAAETPAAEPPS 60
RG GA+ +G G +G K E G AG+ L A P A+ P
Sbjct: 1470 RGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPG--------VAGRPGAKGPE 1521
Query: 61 GKINKAAFKLFKKRKSGGTMPSIFGVK------NKGDGKSSGP---TGLVRSRTHDGLAE 111
G + K P++ G KGD +GP TG+ R GL
Sbjct: 1522 GPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGL-- 1579
Query: 112 VLVLESGRKEEP----------RGG--GDSGGGG--GGRPNPGPPRAAGPGGGSLASSSV 157
VL + G K +P R G GDSG G G PGPP GP G
Sbjct: 1580 VLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRG-------- 1631
Query: 158 AKSHSFFSLLKKNGR--SENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAA 215
++G + +G P D G +RGLRG G+R +K + +
Sbjct: 1632 -----------RDGEVGEKGDEGPPGDPGLPGKAGERGLRGA-PGVRGPVGEKGDQGDPG 1679
Query: 216 E-GR-------APGGGLILPGSLTASLECVKEETPRAAREPEEP---SQDAPRDPAGEPA 264
E GR P G PG V +T ARE EP Q+ PR P G+P
Sbjct: 1680 EDGRNGSPGSSGPKGDRGEPGPPGPPGRLV--DTGPGAREKGEPGDRGQEGPRGPKGDPG 1737
Query: 265 GGEEVP-APADRAPARSCREAEGLAHP----GDTGARGEDAAGHRRAEPGPGEVRTAEDA 319
+P AP +R EG P GD G RG R PG + R+ D
Sbjct: 1738 ----LPGAPGERG-------IEGFRGPPGPQGDPGVRGPAGEKGDRGPPGL-DGRSGLDG 1785
Query: 320 SRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSADRICLMFSDVTSLKSFDSLT 379
A P G +G A A DP D L
Sbjct: 1786 KPGAAGP---------SGPNGAAGKAGDPGR-------------------------DGLP 1811
Query: 380 GCGDIIADQEEEAGPSCDKHVPG----PGKPALSKKN 412
G + ++ GPS +PG GKP L+ KN
Sbjct: 1812 G----LRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKN 1844
Score = 42.7 bits (99), Expect = 0.001
Identities = 116/478 (24%), Positives = 148/478 (30%), Gaps = 103/478 (21%)
Query: 118 GRKEEPRGGGDSG--GGGGGRPNPG-PPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSE 174
G+K EP G+ G G G +PG P R PG S+ AK F ++
Sbjct: 1254 GQKGEP---GEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFP------GAD 1304
Query: 175 NGKGEPVDASKAGGKQKRGLRGL--FSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTA 232
G P A G GL+G G R ++ + E APG
Sbjct: 1305 GRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPG----------- 1353
Query: 233 SLECVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGD 292
+ + E P +P P P G P G P R P G A GD
Sbjct: 1354 --QVIGGEGPGLPGRKGDPGPSGPPGPRG-PLGD-----PGPRGPP----GLPGTAMKGD 1401
Query: 293 TGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVP------------LVDSEGGSG 340
G RGE R PGPGE A +P P DSE G+
Sbjct: 1402 KGDRGE------RGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAP 1455
Query: 341 RAPAAP-DPASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKH 399
P P P P P A + F G EAG +K
Sbjct: 1456 GLPGQPGSPGEQGPRGPPGA-------IGPKGDRGFPGPLG----------EAG---EKG 1495
Query: 400 VPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAK 459
GP PA S+ PGV G P T QG + + G
Sbjct: 1496 ERGPPGPAGSRGLPGVAGRPGAKGPEGPP---------------GPTGRQGEKGEPGRPG 1540
Query: 460 VAAALETKVV-PETPKDTRCVEAAKDASSVKRRRLNR---IPIEPHPKEEP--KHPEKEQ 513
A + V P+ K + A+ V+ R +P +P PK +P + P
Sbjct: 1541 DPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLT 1600
Query: 514 QEGVPNSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSGDALYDLYADPDGSPATLPG 571
P D G PG + D G + G+ P G P LPG
Sbjct: 1601 GRAGPPGDSG-----PPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPG-LPG 1652
Score = 36.2 bits (82), Expect = 0.10
Identities = 65/257 (25%), Positives = 83/257 (32%), Gaps = 34/257 (13%)
Query: 118 GRKEEPRGGGDSG-GGGGGRPN-------PGPPRAAGPGGGSLASSSVAKSHSFFSLLKK 169
G +P G+ G G GR PGPP + GP G S K L
Sbjct: 2413 GEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGD--KGDPGVGLPGP 2470
Query: 170 NGRSENGKGEPVDASKAGGKQKRGLRGLFS--GMRWHRKDKRAKAEAAEGRAPGGGLIL- 226
G +GEP + G + G RGL G R R +K A G ++
Sbjct: 2471 RGE----RGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVIL 2526
Query: 227 --PGSLTASLECVKEETPRAAREPEEPSQD----APRDPAGEPAGGEEVPAPADRAPARS 280
PG A + + E PR + P D + GEP P R
Sbjct: 2527 GPPGPRGAKGD-MGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGP 2585
Query: 281 CREAEGLAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSG 340
+ PGD G+ G+D R E G+V G VK +D E G
Sbjct: 2586 QGQPGAAGIPGDPGSPGKDGVPGIRGE--KGDVGFMGPRGLKGERGVKGACGLDGEKG-- 2641
Query: 341 RAPAAPDPASVDPPSDP 357
D PP P
Sbjct: 2642 ------DKGEAGPPGRP 2652
Score = 34.3 bits (77), Expect = 0.38
Identities = 67/277 (24%), Positives = 94/277 (33%), Gaps = 43/277 (15%)
Query: 120 KEEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGE 179
++ PRG + G G R PGP AG G A S + + G ++ +G
Sbjct: 1466 EQGPRGPPGAIGPKGDRGFPGPLGEAGE-KGERGPPGPAGSRGLPGVAGRPG-AKGPEGP 1523
Query: 180 PVDASKAGGKQKRGLRG-------LFSGMRWHRKDKRAK----AEAAEGRAPGGGLILPG 228
P + G K + G G +G + + D A +G GL+LPG
Sbjct: 1524 PGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPG 1583
Query: 229 --------------SLTASLECVKEETPRAAR-EPEEPSQDAPRDPAGEPA----GGEEV 269
LT + P + +P P P P G G+E
Sbjct: 1584 DPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEG 1643
Query: 270 PAPAD-----RAPARSCREAEGLAHP-GDTGARGEDAAGHRRAEPGPGEVRTAEDASRTG 323
P P D +A R R A G+ P G+ G +G+ R PG + D G
Sbjct: 1644 P-PGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPK--GDRGEPG 1700
Query: 324 AVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSAD 360
P LVD+ G R P + P P D
Sbjct: 1701 P-PGPPGRLVDT-GPGAREKGEPGDRGQEGPRGPKGD 1735
Score = 32.7 bits (73), Expect = 1.1
Identities = 56/206 (27%), Positives = 66/206 (32%), Gaps = 38/206 (18%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
PRG GG G PG P AGP G S + E G+ P
Sbjct: 2172 PRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGL---------------KGEPGETGPPG 2216
Query: 183 ASKAGGKQKRGLRGL--FSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE 240
G GL G SG+ + + E PG PG AS +
Sbjct: 2217 RGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGA----PGRDGASGKDGDRG 2272
Query: 241 TPRAAREPEEPSQDAPRDPAGEP----AGGEEV---PAPADRAPARSCREAEGLAHPGD- 292
+P P P P P GEP A G+ V P A + + PG
Sbjct: 2273 SPGV---PGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAK 2329
Query: 293 -----TGARGEDAAGHRRAEPG-PGE 312
G RGE R EPG PGE
Sbjct: 2330 GDRGLPGPRGEKGEAGRAGEPGDPGE 2355
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 50.4 bits (119), Expect = 5e-06
Identities = 91/340 (26%), Positives = 114/340 (33%), Gaps = 52/340 (15%)
Query: 118 GRKEEPRGGGDSGGGGG-GRPNP----GPPRAAGPGG----GSLASSSVAKSHSFFSLLK 168
G + EP G G G G P P GPP GP G L + H
Sbjct: 694 GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHP-----G 748
Query: 169 KNGRS--ENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPG--GGL 224
K G+S + G P G RG++G G+R K +K E E PG G +
Sbjct: 749 KEGQSGEKGALGPPGPQGPIGYPGPRGVKGA-DGVRGL---KGSKGEKGEDGFPGFKGDM 804
Query: 225 ILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPA----GGEEVPAPADRAPARS 280
L G V + PR PE P A P G+P GE+ P
Sbjct: 805 GLKGDRGE----VGQIGPRGEDGPEGPKGRA--GPTGDPGPSGQAGEKGKLGVPGLPGYP 858
Query: 281 CREAE--GLAHPGDTGARGEDAAGHRRAEPGPGEVR--TAEDASRTGAVPVKTVPLVDSE 336
R+ PG GA GE A +PGP R T SR P +
Sbjct: 859 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 918
Query: 337 GGSG-------RAPAAPD-----PASVDPPSDPSADRICLMFSD--VTSLKSFDSLTGCG 382
GG G R P P P PP P D + T + G G
Sbjct: 919 GGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPG 978
Query: 383 DIIADQEE--EAGPSCDKHVPGPGKPALSKKNPGVVAYQG 420
++ Q E GP ++ PGP P + PG +G
Sbjct: 979 GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1018
Score = 46.6 bits (109), Expect = 7e-05
Identities = 80/324 (24%), Positives = 107/324 (33%), Gaps = 44/324 (13%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGK----G 178
P G G G PGPP GP G + A S S+ + E G+ G
Sbjct: 1217 PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1276
Query: 179 EPVDASKAGGKQKRGLRGLFS--------GMRWHRKDKRAKAEAAEGRAPGGGLILPGSL 230
P +A G K +RG +G G + D K PG PG
Sbjct: 1277 PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD----PGPP 1332
Query: 231 TASLECVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHP 290
++ E +P Q P P+GE P P + AEG
Sbjct: 1333 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAG----PPGPPGKRGPPGAAGAEG--RQ 1386
Query: 291 GDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVP-LVDSEGGSGRAPAAPDPA 349
G+ GA+GE A + GP V A + G ++ +P V +G G A P
Sbjct: 1387 GEKGAKGEAGAEGPPGKTGP--VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPG 1444
Query: 350 SVDPPSDPSADRICLMFSDVTSL--KSFDSLTGCGDIIADQEEEA-----------GPSC 396
+ PP P + D S K L G +Q E+ G
Sbjct: 1445 PMGPPGLPG------LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG 1498
Query: 397 DKHVPGPGKPALSKKNPGVVAYQG 420
D +PGP P PG+ QG
Sbjct: 1499 DGGIPGPAGPLGPPGPPGLPGPQG 1522
Score = 40.8 bits (94), Expect = 0.004
Identities = 52/199 (26%), Positives = 68/199 (34%), Gaps = 29/199 (14%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
P+G G G R +PGPP GP G + K E KG+P
Sbjct: 983 PQGPTGETGPIGERGHPGPP---GPPGEQGLPGAAGK--------------EGAKGDPGP 1025
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKA-EAAEG-RAPGGGLILPGSLTASLECVK-- 238
+G GLRG F G R + A + EG + P G + PG ++
Sbjct: 1026 QGISGKDGPAGLRG-FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIG 1084
Query: 239 -------EETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPG 291
+ P A E P + P+ PAG V P PA S E G
Sbjct: 1085 LPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG 1144
Query: 292 DTGARGEDAAGHRRAEPGP 310
+ G +G PGP
Sbjct: 1145 EPGQKGSKGDKGENGPPGP 1163
Score = 33.5 bits (75), Expect = 0.65
Identities = 72/276 (26%), Positives = 86/276 (31%), Gaps = 74/276 (26%)
Query: 96 GPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGG-GRPNP-GPPRAAGPGG---- 149
GP G + GLA L G P G SG G G P P GP GP G
Sbjct: 721 GPPGEKGPQGKPGLAG-LPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 779
Query: 150 ---GSLASSSVAKSHSFFSLLK-----KNGRSENGK-------------------GEPVD 182
L S K F K K R E G+ G+P
Sbjct: 780 DGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGP 839
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGR-APGGGLILPGSLTASLE-----C 236
+ +AG K K G+ GL GR P G PG A+ E
Sbjct: 840 SGQAGEKGKLGVPGL---------------PGYPGRQGPKGSTGFPGFPGANGEKGARGV 884
Query: 237 VKEETPRAAREPEEP-SQDAPRDPAGEP-----AGGEEVPAPADRAPARSCREAEGLAHP 290
+ PR R P P R P G+P +GG+ P P + + G P
Sbjct: 885 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGP 944
Query: 291 -------------GDTGARGEDAAGHRRAEPGPGEV 313
G G RGE + PGPG V
Sbjct: 945 KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV 980
Score = 31.2 bits (69), Expect = 3.2
Identities = 63/255 (24%), Positives = 80/255 (31%), Gaps = 63/255 (24%)
Query: 81 PSIFGVKNK-GDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNP 139
P G K + GD GP G+ G + G++ P G GGR P
Sbjct: 558 PGSSGAKGESGDPGPQGPRGVQGPPGPTG-------KPGKRGRP-------GADGGRGMP 603
Query: 140 GPPRAAGPGG-GSLASSSVAKSHSFFSLLKKNGRSENG----KGEPVDASKAGGKQKRGL 194
G P A G G L K H R E G G P D G + G
Sbjct: 604 GEPGAKGDRGFDGLPGLPGDKGH----------RGERGPQGPPGPPGDDGMRGEDGEIGP 653
Query: 195 RGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQD 254
RGL G A GL+ P TP A +P D
Sbjct: 654 RGL------------------PGEAGPRGLLGP-----------RGTPGAPGQPGMAGVD 684
Query: 255 APRDPAGE--PAGGEEVPAPADRAPARSCREAEG-LAHPGDTGARGEDA-AGHRRAEPGP 310
P P G P G P + +G + PG+ G +G+ AG A+ P
Sbjct: 685 GPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 744
Query: 311 GEVRTAEDASRTGAV 325
G + GA+
Sbjct: 745 GHPGKEGQSGEKGAL 759
Score = 30.8 bits (68), Expect = 4.2
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 25/117 (21%)
Query: 251 PSQDAPRDPAGEPA-----GGEEVPA-PADRAPARSCREAEGL-AHPGDTGARGEDAAGH 303
P D R GEP G + +P P D+ R R +G PGD G RGED
Sbjct: 594 PGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGH-RGERGPQGPPGPPGDDGMRGEDGEIG 652
Query: 304 RRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSAD 360
R PG +A G + + G+ AP P A VD P P +
Sbjct: 653 PRGLPG--------EAGPRGLLGPR---------GTPGAPGQPGMAGVDGPPGPKGN 692
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 50.4 bits (119), Expect = 5e-06
Identities = 91/340 (26%), Positives = 114/340 (33%), Gaps = 52/340 (15%)
Query: 118 GRKEEPRGGGDSGGGGG-GRPNP----GPPRAAGPGG----GSLASSSVAKSHSFFSLLK 168
G + EP G G G G P P GPP GP G L + H
Sbjct: 643 GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHP-----G 697
Query: 169 KNGRS--ENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPG--GGL 224
K G+S + G P G RG++G G+R K +K E E PG G +
Sbjct: 698 KEGQSGEKGALGPPGPQGPIGYPGPRGVKGA-DGVRGL---KGSKGEKGEDGFPGFKGDM 753
Query: 225 ILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPA----GGEEVPAPADRAPARS 280
L G V + PR PE P A P G+P GE+ P
Sbjct: 754 GLKGDRGE----VGQIGPRGEDGPEGPKGRA--GPTGDPGPSGQAGEKGKLGVPGLPGYP 807
Query: 281 CREAE--GLAHPGDTGARGEDAAGHRRAEPGPGEVR--TAEDASRTGAVPVKTVPLVDSE 336
R+ PG GA GE A +PGP R T SR P +
Sbjct: 808 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 867
Query: 337 GGSG-------RAPAAPD-----PASVDPPSDPSADRICLMFSD--VTSLKSFDSLTGCG 382
GG G R P P P PP P D + T + G G
Sbjct: 868 GGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPG 927
Query: 383 DIIADQEE--EAGPSCDKHVPGPGKPALSKKNPGVVAYQG 420
++ Q E GP ++ PGP P + PG +G
Sbjct: 928 GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 967
Score = 46.6 bits (109), Expect = 7e-05
Identities = 80/324 (24%), Positives = 107/324 (33%), Gaps = 44/324 (13%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGK----G 178
P G G G PGPP GP G + A S S+ + E G+ G
Sbjct: 1166 PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1225
Query: 179 EPVDASKAGGKQKRGLRGLFS--------GMRWHRKDKRAKAEAAEGRAPGGGLILPGSL 230
P +A G K +RG +G G + D K PG PG
Sbjct: 1226 PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD----PGPP 1281
Query: 231 TASLECVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHP 290
++ E +P Q P P+GE P P + AEG
Sbjct: 1282 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAG----PPGPPGKRGPPGAAGAEG--RQ 1335
Query: 291 GDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVP-LVDSEGGSGRAPAAPDPA 349
G+ GA+GE A + GP V A + G ++ +P V +G G A P
Sbjct: 1336 GEKGAKGEAGAEGPPGKTGP--VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPG 1393
Query: 350 SVDPPSDPSADRICLMFSDVTSL--KSFDSLTGCGDIIADQEEEA-----------GPSC 396
+ PP P + D S K L G +Q E+ G
Sbjct: 1394 PMGPPGLPG------LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG 1447
Query: 397 DKHVPGPGKPALSKKNPGVVAYQG 420
D +PGP P PG+ QG
Sbjct: 1448 DGGIPGPAGPLGPPGPPGLPGPQG 1471
Score = 40.8 bits (94), Expect = 0.004
Identities = 52/199 (26%), Positives = 68/199 (34%), Gaps = 29/199 (14%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
P+G G G R +PGPP GP G + K E KG+P
Sbjct: 932 PQGPTGETGPIGERGHPGPP---GPPGEQGLPGAAGK--------------EGAKGDPGP 974
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKA-EAAEG-RAPGGGLILPGSLTASLECVK-- 238
+G GLRG F G R + A + EG + P G + PG ++
Sbjct: 975 QGISGKDGPAGLRG-FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIG 1033
Query: 239 -------EETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPG 291
+ P A E P + P+ PAG V P PA S E G
Sbjct: 1034 LPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG 1093
Query: 292 DTGARGEDAAGHRRAEPGP 310
+ G +G PGP
Sbjct: 1094 EPGQKGSKGDKGENGPPGP 1112
Score = 33.5 bits (75), Expect = 0.65
Identities = 72/276 (26%), Positives = 86/276 (31%), Gaps = 74/276 (26%)
Query: 96 GPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGG-GRPNP-GPPRAAGPGG---- 149
GP G + GLA L G P G SG G G P P GP GP G
Sbjct: 670 GPPGEKGPQGKPGLAG-LPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 728
Query: 150 ---GSLASSSVAKSHSFFSLLK-----KNGRSENGK-------------------GEPVD 182
L S K F K K R E G+ G+P
Sbjct: 729 DGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGP 788
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGR-APGGGLILPGSLTASLE-----C 236
+ +AG K K G+ GL GR P G PG A+ E
Sbjct: 789 SGQAGEKGKLGVPGL---------------PGYPGRQGPKGSTGFPGFPGANGEKGARGV 833
Query: 237 VKEETPRAAREPEEP-SQDAPRDPAGEP-----AGGEEVPAPADRAPARSCREAEGLAHP 290
+ PR R P P R P G+P +GG+ P P + + G P
Sbjct: 834 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGP 893
Query: 291 -------------GDTGARGEDAAGHRRAEPGPGEV 313
G G RGE + PGPG V
Sbjct: 894 KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV 929
Score = 31.2 bits (69), Expect = 3.2
Identities = 63/255 (24%), Positives = 80/255 (31%), Gaps = 63/255 (24%)
Query: 81 PSIFGVKNK-GDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNP 139
P G K + GD GP G+ G + G++ P G GGR P
Sbjct: 507 PGSSGAKGESGDPGPQGPRGVQGPPGPTG-------KPGKRGRP-------GADGGRGMP 552
Query: 140 GPPRAAGPGG-GSLASSSVAKSHSFFSLLKKNGRSENG----KGEPVDASKAGGKQKRGL 194
G P A G G L K H R E G G P D G + G
Sbjct: 553 GEPGAKGDRGFDGLPGLPGDKGH----------RGERGPQGPPGPPGDDGMRGEDGEIGP 602
Query: 195 RGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQD 254
RGL G A GL+ P TP A +P D
Sbjct: 603 RGL------------------PGEAGPRGLLGP-----------RGTPGAPGQPGMAGVD 633
Query: 255 APRDPAGE--PAGGEEVPAPADRAPARSCREAEG-LAHPGDTGARGEDA-AGHRRAEPGP 310
P P G P G P + +G + PG+ G +G+ AG A+ P
Sbjct: 634 GPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 693
Query: 311 GEVRTAEDASRTGAV 325
G + GA+
Sbjct: 694 GHPGKEGQSGEKGAL 708
Score = 30.8 bits (68), Expect = 4.2
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 25/117 (21%)
Query: 251 PSQDAPRDPAGEPA-----GGEEVPA-PADRAPARSCREAEGL-AHPGDTGARGEDAAGH 303
P D R GEP G + +P P D+ R R +G PGD G RGED
Sbjct: 543 PGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGH-RGERGPQGPPGPPGDDGMRGEDGEIG 601
Query: 304 RRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSAD 360
R PG +A G + + G+ AP P A VD P P +
Sbjct: 602 PRGLPG--------EAGPRGLLGPR---------GTPGAPGQPGMAGVDGPPGPKGN 641
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 50.4 bits (119), Expect = 5e-06
Identities = 91/340 (26%), Positives = 114/340 (33%), Gaps = 52/340 (15%)
Query: 118 GRKEEPRGGGDSGGGGG-GRPNP----GPPRAAGPGG----GSLASSSVAKSHSFFSLLK 168
G + EP G G G G P P GPP GP G L + H
Sbjct: 682 GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHP-----G 736
Query: 169 KNGRS--ENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPG--GGL 224
K G+S + G P G RG++G G+R K +K E E PG G +
Sbjct: 737 KEGQSGEKGALGPPGPQGPIGYPGPRGVKGA-DGVRGL---KGSKGEKGEDGFPGFKGDM 792
Query: 225 ILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPA----GGEEVPAPADRAPARS 280
L G V + PR PE P A P G+P GE+ P
Sbjct: 793 GLKGDRGE----VGQIGPRGEDGPEGPKGRA--GPTGDPGPSGQAGEKGKLGVPGLPGYP 846
Query: 281 CREAE--GLAHPGDTGARGEDAAGHRRAEPGPGEVR--TAEDASRTGAVPVKTVPLVDSE 336
R+ PG GA GE A +PGP R T SR P +
Sbjct: 847 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 906
Query: 337 GGSG-------RAPAAPD-----PASVDPPSDPSADRICLMFSD--VTSLKSFDSLTGCG 382
GG G R P P P PP P D + T + G G
Sbjct: 907 GGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPG 966
Query: 383 DIIADQEE--EAGPSCDKHVPGPGKPALSKKNPGVVAYQG 420
++ Q E GP ++ PGP P + PG +G
Sbjct: 967 GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1006
Score = 46.6 bits (109), Expect = 7e-05
Identities = 80/324 (24%), Positives = 107/324 (33%), Gaps = 44/324 (13%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGK----G 178
P G G G PGPP GP G + A S S+ + E G+ G
Sbjct: 1205 PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1264
Query: 179 EPVDASKAGGKQKRGLRGLFS--------GMRWHRKDKRAKAEAAEGRAPGGGLILPGSL 230
P +A G K +RG +G G + D K PG PG
Sbjct: 1265 PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD----PGPP 1320
Query: 231 TASLECVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHP 290
++ E +P Q P P+GE P P + AEG
Sbjct: 1321 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAG----PPGPPGKRGPPGAAGAEG--RQ 1374
Query: 291 GDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVP-LVDSEGGSGRAPAAPDPA 349
G+ GA+GE A + GP V A + G ++ +P V +G G A P
Sbjct: 1375 GEKGAKGEAGAEGPPGKTGP--VGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPG 1432
Query: 350 SVDPPSDPSADRICLMFSDVTSL--KSFDSLTGCGDIIADQEEEA-----------GPSC 396
+ PP P + D S K L G +Q E+ G
Sbjct: 1433 PMGPPGLPG------LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG 1486
Query: 397 DKHVPGPGKPALSKKNPGVVAYQG 420
D +PGP P PG+ QG
Sbjct: 1487 DGGIPGPAGPLGPPGPPGLPGPQG 1510
Score = 40.8 bits (94), Expect = 0.004
Identities = 52/199 (26%), Positives = 68/199 (34%), Gaps = 29/199 (14%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
P+G G G R +PGPP GP G + K E KG+P
Sbjct: 971 PQGPTGETGPIGERGHPGPP---GPPGEQGLPGAAGK--------------EGAKGDPGP 1013
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKA-EAAEG-RAPGGGLILPGSLTASLECVK-- 238
+G GLRG F G R + A + EG + P G + PG ++
Sbjct: 1014 QGISGKDGPAGLRG-FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIG 1072
Query: 239 -------EETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPG 291
+ P A E P + P+ PAG V P PA S E G
Sbjct: 1073 LPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG 1132
Query: 292 DTGARGEDAAGHRRAEPGP 310
+ G +G PGP
Sbjct: 1133 EPGQKGSKGDKGENGPPGP 1151
Score = 33.5 bits (75), Expect = 0.65
Identities = 72/276 (26%), Positives = 86/276 (31%), Gaps = 74/276 (26%)
Query: 96 GPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGG-GRPNP-GPPRAAGPGG---- 149
GP G + GLA L G P G SG G G P P GP GP G
Sbjct: 709 GPPGEKGPQGKPGLAG-LPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 767
Query: 150 ---GSLASSSVAKSHSFFSLLK-----KNGRSENGK-------------------GEPVD 182
L S K F K K R E G+ G+P
Sbjct: 768 DGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGP 827
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGR-APGGGLILPGSLTASLE-----C 236
+ +AG K K G+ GL GR P G PG A+ E
Sbjct: 828 SGQAGEKGKLGVPGL---------------PGYPGRQGPKGSTGFPGFPGANGEKGARGV 872
Query: 237 VKEETPRAAREPEEP-SQDAPRDPAGEP-----AGGEEVPAPADRAPARSCREAEGLAHP 290
+ PR R P P R P G+P +GG+ P P + + G P
Sbjct: 873 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGP 932
Query: 291 -------------GDTGARGEDAAGHRRAEPGPGEV 313
G G RGE + PGPG V
Sbjct: 933 KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV 968
Score = 31.2 bits (69), Expect = 3.2
Identities = 63/255 (24%), Positives = 80/255 (31%), Gaps = 63/255 (24%)
Query: 81 PSIFGVKNK-GDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNP 139
P G K + GD GP G+ G + G++ P G GGR P
Sbjct: 546 PGSSGAKGESGDPGPQGPRGVQGPPGPTG-------KPGKRGRP-------GADGGRGMP 591
Query: 140 GPPRAAGPGG-GSLASSSVAKSHSFFSLLKKNGRSENG----KGEPVDASKAGGKQKRGL 194
G P A G G L K H R E G G P D G + G
Sbjct: 592 GEPGAKGDRGFDGLPGLPGDKGH----------RGERGPQGPPGPPGDDGMRGEDGEIGP 641
Query: 195 RGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQD 254
RGL G A GL+ P TP A +P D
Sbjct: 642 RGL------------------PGEAGPRGLLGP-----------RGTPGAPGQPGMAGVD 672
Query: 255 APRDPAGE--PAGGEEVPAPADRAPARSCREAEG-LAHPGDTGARGEDA-AGHRRAEPGP 310
P P G P G P + +G + PG+ G +G+ AG A+ P
Sbjct: 673 GPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 732
Query: 311 GEVRTAEDASRTGAV 325
G + GA+
Sbjct: 733 GHPGKEGQSGEKGAL 747
Score = 30.8 bits (68), Expect = 4.2
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 25/117 (21%)
Query: 251 PSQDAPRDPAGEPA-----GGEEVPA-PADRAPARSCREAEGL-AHPGDTGARGEDAAGH 303
P D R GEP G + +P P D+ R R +G PGD G RGED
Sbjct: 582 PGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGH-RGERGPQGPPGPPGDDGMRGEDGEIG 640
Query: 304 RRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSAD 360
R PG +A G + + G+ AP P A VD P P +
Sbjct: 641 PRGLPG--------EAGPRGLLGPR---------GTPGAPGQPGMAGVDGPPGPKGN 680
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 50.4 bits (119), Expect = 5e-06
Identities = 82/382 (21%), Positives = 130/382 (34%), Gaps = 38/382 (9%)
Query: 231 TASLECVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHP 290
T E V EE + A+E E ++ + E G EE +P A +EA+
Sbjct: 464 TQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAE-GGEEETKSPPAEEAASPEKEAKSPVKE 522
Query: 291 GDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPAS 350
+ + E + + P EV++ E A K+ P E S A PA
Sbjct: 523 -EAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPP----EAKSPEKEEAKSPAE 577
Query: 351 VDPPS---DPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPA 407
V P P+ + KS + A EA + P +
Sbjct: 578 VKSPEKAKSPAKEEA----KSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVK 633
Query: 408 LSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETK 467
+K A EE SP++ S +E+ P++ + V A ++
Sbjct: 634 SPEK-----AKSPTKEEAKSPEKAK-----------SPEKEEAKSPEKAKSPVKAEAKSP 677
Query: 468 VVPETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDS 527
++P K S VK + + KEE K PEK + P +E
Sbjct: 678 EKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKS---PVKEEAKTPE 734
Query: 528 TTPGPEEDSSSSGKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPV 587
P ++ + S +KA P + + D P A P K E+ S + +
Sbjct: 735 KAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVK 794
Query: 588 SPGTITCPLRTPGSLLKDSKIP 609
SP PL+ +D+K P
Sbjct: 795 SPEKAKSPLK------EDAKAP 810
Score = 38.5 bits (88), Expect = 0.020
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 10/179 (5%)
Query: 459 KVAAALETKVVPETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVP 518
KV + + KVV ++ K+T VE + + V E KE + KE++ G
Sbjct: 437 KVKSEEKIKVVEKSEKETVIVEEQTEETQVTEE-----VTEEEEKEAKEEEGKEEEGGEE 491
Query: 519 NSDEGYWDSTTPGPEEDSSSSGKKAGIP--RDSYSGDALYDLYADPDGSPATLPGGKDNE 576
EG + T P E+++S K+A P ++ S + SPA + K E
Sbjct: 492 EEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEV---KSPE 548
Query: 577 ETSSLSRLKPVSPGTITCPLRTPGSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMP 635
+ S ++ + SP P + + K P K + P + P +++ P
Sbjct: 549 KAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSP 607
Score = 30.4 bits (67), Expect = 5.5
Identities = 106/571 (18%), Positives = 176/571 (30%), Gaps = 80/571 (14%)
Query: 52 ETPAAEPPSGKINKAAFKLFKKRKSGGTMPSIFG----VKNKGDGKSSGPTGLVRSRTHD 107
ET E + + K A + K + GG G K+ +++ P +S +
Sbjct: 463 ETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKE 522
Query: 108 GLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLL 167
+S KEE + + P +A P S AKS
Sbjct: 523 EAKSPAEAKSPEKEEAKSPAEV---------KSPEKAKSPAKEEAKSPPEAKSPE----- 568
Query: 168 KKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILP 227
K+ +S P A ++ + S + K AE ++P
Sbjct: 569 KEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKS 628
Query: 228 GSLTASLECVKEETPRAAREPEE---PSQDAPRDP--AGEPAGGEEVPAPADRAPARS-C 281
+ S E K T A+ PE+ P ++ + P A P E ++P ++
Sbjct: 629 PAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEA 688
Query: 282 REAEGLAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGR 341
+ E P A+ + A E + P K V E S
Sbjct: 689 KSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPE 748
Query: 342 APAAPDPASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVP 401
+P+ A P A +EEA DK
Sbjct: 749 KAKSPEKAKTLDVKSPEAK-------------------------TPAKEEARSPADKFPE 783
Query: 402 GPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVA 461
P + A E+ +P++ + + ++ S +E+ +PQE K
Sbjct: 784 KAKSPVKEEVKSPEKAKSPLKEDAKAPEKE----IPKKEEVKSPVKEE-EKPQEVKVKEP 838
Query: 462 AA-LETKVVPETPK-----DTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQE 515
E + P TPK D++ EA K + + + P PKE +KE+ E
Sbjct: 839 PKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAE 898
Query: 516 G---VP------------NSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSG-----DAL 555
VP D + T +E + K+ P + D
Sbjct: 899 DKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTK 958
Query: 556 YDLYADPDGSPATLPGGKDNEETSSLSRLKP 586
+ P+ P T K++++T S KP
Sbjct: 959 EEKAKKPEEKPKTEAKAKEDDKTLSKEPSKP 989
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 48.5 bits (114), Expect = 2e-05
Identities = 67/248 (27%), Positives = 91/248 (36%), Gaps = 49/248 (19%)
Query: 5 RSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPSGKIN 64
+SRGGG R G A++ +R+ A AG E PAA+ G+
Sbjct: 265 KSRGGGDKKLRRQGQNAALAGAKRRGAATAG----------------EKPAAKGRGGRGP 308
Query: 65 KA----------AFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHD---GLAE 111
K+ K ++R T + G K G G+ V+SR G
Sbjct: 309 KSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKP 368
Query: 112 VLVLESGRKEEPRGGGDSGG------GGGGRPNP---GPPR------AAGPGGGSLASSS 156
S + RGGGD G G GR P P R AA P GG S
Sbjct: 369 RRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGG---GSK 425
Query: 157 VAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAE 216
+ + + G+S +G G+ +QK G S R +K R KA AA
Sbjct: 426 KPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAES--RGDKKQGRQKASAAG 483
Query: 217 GRAPGGGL 224
++ GGGL
Sbjct: 484 TKSRGGGL 491
Score = 40.8 bits (94), Expect = 0.004
Identities = 76/322 (23%), Positives = 108/322 (33%), Gaps = 58/322 (18%)
Query: 73 KRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRG------- 125
K + GG + K +GDG+ R R A +K RG
Sbjct: 379 KSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSR 438
Query: 126 GGDSGGGGGGRPN----PGPPRAAGPGG----------------GSLASSSVAKSHSFFS 165
GG S GGG +P +AA G G+ + KSHS +
Sbjct: 439 GGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKN 498
Query: 166 LLKKNGRSENG--KGEPVDASKAGGKQKR----GLRGLFSGMRWHRKDKRAKAEAAEGRA 219
L ++ ++E K A G KQ R + G S + + +R KA AA +
Sbjct: 499 LWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATS 558
Query: 220 PGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPA-PADRAPA 278
GGG G+ K+ +P + Q A A GG++ P A
Sbjct: 559 HGGG----GN--------KQSRGGGGNKPRQWGQTAA--AAKTRGGGDKQPGWQKAAAGV 604
Query: 279 RSCREAEGLAHPGDTGARGEDAAGHRRA-EPGPGEVRTAEDASRTGAVPVKTVPLVDSEG 337
R +G A G A ++ G + AE A TGA S G
Sbjct: 605 TKSRSGDGGKKAWRQKAAGTGAKSRKKPWRRGQKDAAAAEKAWATGAT---------SRG 655
Query: 338 GSGRAPAAPDPASVDPPSDPSA 359
G+ P PA+ S +A
Sbjct: 656 SGGKQPRWQKPAAAGSESSAAA 677
Score = 35.4 bits (80), Expect = 0.17
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 119 RKEEPRGGGDSGGGGGGRPNPGPPRAAGPGGG-SLASSSVAKSHSFFSLLKKNGRSENGK 177
R ++PR G GGGG G ++ G GG S + A S S K R K
Sbjct: 714 RGKKPRLGKSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAK 773
Query: 178 GEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAP 220
+ + G QK G R + R + AA G+ P
Sbjct: 774 SRSGEKAVTAGGQKAAAAGGKKPPRVKSRGGRGQKAAAGGKKP 816
Score = 32.7 bits (73), Expect = 1.1
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 118 GRKEEPRGGGDSGGGGGGRPNPGPPRAA----GPGGGSLASSSVAKSHSFFSLLKKNGR- 172
G K GG S G GG + G AA G GG AKS S + G+
Sbjct: 728 GAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQK 787
Query: 173 --SENGKGEPVDASKAGGKQKRGLRG 196
+ GK P S+ G QK G
Sbjct: 788 AAAAGGKKPPRVKSRGGRGQKAAAGG 813
Score = 31.2 bits (69), Expect = 3.2
Identities = 62/274 (22%), Positives = 87/274 (31%), Gaps = 33/274 (12%)
Query: 6 SRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPSGKINK 65
S GGGG RGG G R+ + A AA+T K
Sbjct: 558 SHGGGGNKQSRGGGGNKP---RQWGQTAA---------------AAKTRGGGDKQPGWQK 599
Query: 66 AAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRG 125
AA + K R G + + K G G S R + AE +
Sbjct: 600 AAAGVTKSRSGDGGKKA-WRQKAAGTGAKSRKKPWRRGQKDAAAAE---------KAWAT 649
Query: 126 GGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASK 185
G S G GG +P P AAG S A+++V + ++ G G A
Sbjct: 650 GATSRGSGGKQPRWQKPAAAG--SESSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVG 707
Query: 186 AGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAA 245
Q+RG + R K + A+ R GG G A+ K A
Sbjct: 708 INPWQRRGKKPRLGKSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAA---SKSHGGGGA 764
Query: 246 REPEEPSQDAPRDPAGEPAGGEEVPAPADRAPAR 279
+ + AGG++ A + P R
Sbjct: 765 KRRRGGGAKSRSGEKAVTAGGQKAAAAGGKKPPR 798
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 48.1 bits (113), Expect = 3e-05
Identities = 47/149 (31%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 214 AAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPA 273
+AE RA G + P L A V +PR P S DA AG P G + A
Sbjct: 205 SAERRARAGPFLTPSPLHA----VAMRSPRPCGRPPTDSPDA--GGAGRPLDGY-ISALL 257
Query: 274 DRAPARSCREAEGLAHPGDTGARGEDAAGHRR--AEPGPGEVRTAEDAS--RTGAVPVKT 329
R R + D G R +++ R A P PG R A + S R G P
Sbjct: 258 RRRRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDASPSPGSARPAREPSLERVGGHPTSP 317
Query: 330 VPLVDSEGGSGRAPAAPDPASVDPPSDPS 358
L + S + AAP+PA+ PP+ PS
Sbjct: 318 AALSRAWASSWESEAAPEPAA--PPAAPS 344
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 47.8 bits (112), Expect = 3e-05
Identities = 59/217 (27%), Positives = 78/217 (35%), Gaps = 36/217 (16%)
Query: 387 DQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQT 446
D E P CD VP P NP +G GE +TY E+
Sbjct: 235 DYCEHYSPDCDTAVPDT--PQSQDPNPDEYYTEGDGE--------GETYYYEY-PYYEDP 283
Query: 447 EEQGPEPQEGAAKVAAALETKVVPE--TPKDTRCV------EAAKDASSVKRRRLNRIPI 498
E+ G EP V AA ET VPE TP T E A V + +P
Sbjct: 284 EDLGKEPTPSKKPVEAAKETTEVPEELTPTPTEAAPMPETSEGAGKEEDVGIGDYDYVPS 343
Query: 499 E----PHPKEEPKHPEKEQQEGVP-NSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSG- 552
E P P ++ + E E+ P + G T+ +SS+ G D G
Sbjct: 344 EDYYTPSPYDDLTYGEGEENPDQPTDPGAGAEIPTSTADTSNSSNPAPPPGEGADDLEGE 403
Query: 553 ----------DALYDLYADPDGSPATL-PGGKDNEET 578
+ YD Y DP SP+ + PG N++T
Sbjct: 404 FTEETIRNLDENYYDPYYDPTSSPSEIGPGMPANQDT 440
Score = 42.4 bits (98), Expect = 0.001
Identities = 72/281 (25%), Positives = 88/281 (31%), Gaps = 67/281 (23%)
Query: 88 NKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSG-----GGGGGRPNPGPP 142
+KG+ GPTG G SG EP G G G G R PGPP
Sbjct: 1172 DKGEQGPPGPTGPQGPIGQPG-------PSGADGEPGPRGQQGLFGQKGDEGPRGFPGPP 1224
Query: 143 RAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMR 202
GP G L+ KGE D + G G RG
Sbjct: 1225 ---GPVG-----------------LQGLPGPPGEKGETGDVGQMGPPGPPGPRG------ 1258
Query: 203 WHRKDKRAKAEAAEG-RAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAG 261
+ A A+G + P GG+ PG++ E P A EP P + P P G
Sbjct: 1259 ------PSGAPGADGPQGPPGGIGNPGAVGEKGE------PGEAGEPGLPGEGGPPGPKG 1306
Query: 262 EPAG-GEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDAS 320
E GE P+ A P PGD G +G +PGP
Sbjct: 1307 ERGEKGESGPSGAAGPPGPK-------GPPGDDGPKGSPGPVGFPGDPGP--------PG 1351
Query: 321 RTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSADR 361
G P + G +P P PS P R
Sbjct: 1352 EPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKR 1392
Score = 41.6 bits (96), Expect = 0.002
Identities = 61/232 (26%), Positives = 78/232 (33%), Gaps = 37/232 (15%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
P G++G G P PGPP GP G A N + KGEP +
Sbjct: 1236 PGEKGETGDVGQMGP-PGPPGPRGPSGAPGADGPQGPPGGI-----GNPGAVGEKGEPGE 1289
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETP 242
A + G + G G K + E E P G PG + + +P
Sbjct: 1290 AGEPGLPGEGGPPG----------PKGERGEKGES-GPSGAAGPPGPKGPPGDDGPKGSP 1338
Query: 243 RAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAG 302
P +P P GEP + P D+ E PG TG G
Sbjct: 1339 GPVGFPGDPG------PPGEPGPAGQDGPPGDKGDDG---EPGQTGSPGPTGEPGPSGPP 1389
Query: 303 HRRAEPGPG--EVRTAEDASRTGA----VPVKTVPLVDSEGGSGRAPAAPDP 348
+R PGP E R E ++ A P KT P+ G AP P P
Sbjct: 1390 GKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPI-----GPQGAPGKPGP 1436
Score = 38.5 bits (88), Expect = 0.020
Identities = 107/432 (24%), Positives = 132/432 (30%), Gaps = 59/432 (13%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
P+G G G R +PGPP G G L E KG+P
Sbjct: 1001 PQGPTGETGPMGERGHPGPPGPPGEQG-----------------LPGLAGKEGTKGDPGP 1043
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETP 242
A G GLRG F G R A PG PG + E
Sbjct: 1044 AGLPGKDGPPGLRG-FPGDRGLPGPVGALGLKGNEGPPGP----PGPAGSPGERGPAGAA 1098
Query: 243 RAAREPEEPSQDAPRDPAGEP-AGGEEVP-APADRAPARSCREAEGLAHP-GDTGARGED 299
P P P PAGE A GE+ P PA R + GL P G G GED
Sbjct: 1099 GPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGR---DGLQGPVGLPGPAGPVGPPGED 1155
Query: 300 AAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPL--VDSEGGSGRAPAAPDPASVDPPSDP 357
G + PG+ + D G P T P + G SG A P P
Sbjct: 1156 --GDKGEIGEPGQKGSKGDKGEQGP-PGPTGPQGPIGQPGPSG-ADGEPGPRGQQGLFGQ 1211
Query: 358 SADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVA 417
D F L G ++ E G PGP P PG
Sbjct: 1212 KGDEGPRGFPGPPGPVGLQGLPG----PPGEKGETGDVGQMGPPGPPGPRGPSGAPGADG 1267
Query: 418 YQG--GG-------EEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKV 468
QG GG E P E + L E+G + + G + A
Sbjct: 1268 PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAG------ 1321
Query: 469 VPETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDST 528
P PK + K + P +P P EP ++ G D +
Sbjct: 1322 -PPGPKGPPGDDGPKGSPGPV-----GFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTG 1375
Query: 529 TPGPEEDSSSSG 540
+PGP + SG
Sbjct: 1376 SPGPTGEPGPSG 1387
Score = 36.6 bits (83), Expect = 0.077
Identities = 86/346 (24%), Positives = 110/346 (31%), Gaps = 64/346 (18%)
Query: 118 GRKEEPRGGGDSGGGGG-GRPNP----GPPRAAGP-GGGSLASSSVAKSHSFFSLLKKNG 171
G + EP G G G G P P GPP GP G L A +
Sbjct: 712 GPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPP 771
Query: 172 RSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPG--GGLILPGS 229
+ G+G P G RG++G G+R K K E E PG G + + G
Sbjct: 772 GEKGGQGPPGPQGPIGYPGPRGVKGA-DGIRGL---KGTKGEKGEDGFPGFKGDMGIKGD 827
Query: 230 LTASLECVKEETPRAAREPEEPS-------QDAPRDPAGEPA--GGEEVPA-PADRAPAR 279
+ PR PE P P P GE G +P P + P
Sbjct: 828 RGE----IGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKG 883
Query: 280 SCR---------EAEGLAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTV 330
S E G PG G RG+ R E GP + TG K
Sbjct: 884 SIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGI--------TGKPGPK-- 933
Query: 331 PLVDSEGGSG-------RAPAAPD-----PASVDPPSDPSADRICLMFSD--VTSLKSFD 376
+ GG G R P P P PP P D + T +
Sbjct: 934 ---GNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT 990
Query: 377 SLTGCGDIIADQ--EEEAGPSCDKHVPGPGKPALSKKNPGVVAYQG 420
G ++ Q E GP ++ PGP P + PG+ +G
Sbjct: 991 GPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEG 1036
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 47.8 bits (112), Expect = 3e-05
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 24/173 (13%)
Query: 125 GGGDSGGGG---GGRPNPGPPRA----------AGPGGGSLASSSVAKSHSFFSLLKKNG 171
GGG GG G GG P P PPR G GG AS S + S S K G
Sbjct: 173 GGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSS----SAGKTPG 228
Query: 172 RSENGKGEPVDASKAGGKQKRGLRGLFSG--MRWHRKDKRAKAEAAEGR---APGGGLIL 226
G V +GG G +++H K +RA A AA + GGG
Sbjct: 229 TGSRNSGSGVAGGGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNGGGSSS 288
Query: 227 PGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPA--GGEEVPAPADRAP 277
S + V E A+ P + + P+ A A GG + AP P
Sbjct: 289 RSSPVSGPPAVCETLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQP 341
Score = 32.3 bits (72), Expect = 1.5
Identities = 58/256 (22%), Positives = 81/256 (31%), Gaps = 76/256 (29%)
Query: 9 GGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPSGKINKAAF 68
GGG E GGAG G + E GA P PP G K
Sbjct: 166 GGGGGGEGGGAGGGSG----EREGGA-------------------PQPPPPRGWRGKGV- 201
Query: 69 KLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGD 128
+ ++ GG + G+G S P+ +T G G G
Sbjct: 202 ---RAQQRGG---------SGGEGASPSPSSSSAGKT-----------PGTGSRNSGSGV 238
Query: 129 SGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGG 188
+GGG G GGGS +S LKK + + A GG
Sbjct: 239 AGGGSG-------------GGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNGGG 285
Query: 189 KQKR-----GLRGLFSGMRWHRKDKRAKA-----EAAEGRAPGGGLILPGSLTASLECVK 238
R G + + A A ++AEG A GGG + A+
Sbjct: 286 SSSRSSPVSGPPAVCETLAVASASPMAAAAEGPQQSAEGSASGGG------MQAAAPPSS 339
Query: 239 EETPRAAREPEEPSQD 254
+ P+ +E EE ++
Sbjct: 340 QPHPQQLQEQEEMQEE 355
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 47.8 bits (112), Expect = 3e-05
Identities = 139/628 (22%), Positives = 196/628 (31%), Gaps = 116/628 (18%)
Query: 50 AAETPAAEPPSGKINKAAFKLFK-----------KRKSGGTMPSIFGVKNKGDGKSSGPT 98
A+ PAA PPS K + AA L K K G PS+ G P
Sbjct: 1032 ASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPK 1091
Query: 99 GLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVA 158
G + + G + + P+GG + G P + GG + A
Sbjct: 1092 GGPATPSPKGAP---MPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGA 1148
Query: 159 KSHSFFSLLKKNG--RSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAE-AA 215
+ + G + KG P + K GL K A AA
Sbjct: 1149 PTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT--------PSPKGAPTTPAA 1200
Query: 216 EGRAPGGGLILPGSLTA-SLECVKEETPRAAREPEEPSQDAPRDPAG---EPAGGEEVPA 271
+P GGL P A + +P+ P + AP PA P GG P
Sbjct: 1201 TPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSP-KGAPTTPAATPPSPKGGPATPP 1259
Query: 272 P--ADRAPARSCREAEG-LAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVK 328
P A PA + +G LA P GA + GP P
Sbjct: 1260 PKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPA----TSPPKGAPTPPAA 1315
Query: 329 TVPLVDSEGGSGRAPAAPDPASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQ 388
T P G+ AP P +V PPS + T+ S
Sbjct: 1316 TPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTL-----PATTPSS-------------- 1356
Query: 389 EEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEE 448
+ GP+ GP PA + + GG M P +
Sbjct: 1357 --KGGPTTPSSKEGPTPPAATPSHK-------GGPAMTPPSPKRGPAI------------ 1395
Query: 449 QGPEPQ-EGAAKVAAALETKVVPETP--KDTRCVEAAKDAS--SVKRRRLNRIPIEPHPK 503
P P+ + + L K P TP ++ + D + +V L + P PK
Sbjct: 1396 --PSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPK 1453
Query: 504 EEPKHPEKEQQEGVPNSDEGYWDSTTPGPEED-------SSSSGKKAGIPRDSYSGDALY 556
P P + +P T P P+E +SSS KKA L
Sbjct: 1454 GGPATPSSKGDPTLP-------AVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTL- 1505
Query: 557 DLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTPGSLL-KDSKIPISIKHL 615
PA +P + SR P++P +TP +L K++ IP ++
Sbjct: 1506 ---------PAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAM--T 1554
Query: 616 TNLPSSHPVVHQQPSRSEMPRTKIPVSK 643
P P + P+ E P T P SK
Sbjct: 1555 VPSPKKTPAI---PTPKEAPAT--PSSK 1577
Score = 32.7 bits (73), Expect = 1.1
Identities = 45/162 (27%), Positives = 55/162 (33%), Gaps = 24/162 (14%)
Query: 214 AAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAG----------EP 263
AA +P GG P A TP AA P A P G P
Sbjct: 944 AATPPSPKGGPATPSPKWAP-------TPPAATPPSPKGGPATPSPKGAPTPPAATPPSP 996
Query: 264 AGGEEVPAP--ADRAPARSCREAEG--LAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDA 319
GG P+P A PA + +G A P GA AA + P + A
Sbjct: 997 KGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGA 1056
Query: 320 SRTGAVPV---KTVPLVDSEGGSGRAPAAPDPASVDPPSDPS 358
T A + K P S G+ PAA P+ P+ PS
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPS 1098
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 47.4 bits (111), Expect = 4e-05
Identities = 94/365 (25%), Positives = 122/365 (33%), Gaps = 84/365 (23%)
Query: 139 PGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGK-GEPVDASKAGGKQKRGL--- 194
P PP A+ G G A+ HS L + E+ + G S+ ++R L
Sbjct: 6846 PAPP-ASPEGAGPPAAQGCVPRHSVIRSLFYHQAGESPEHGALAPGSRRHPARRRHLLKG 6904
Query: 195 ---RGLFSGMRWHRKDKR---------------AKAEAAEG--RAPGGGLILPGSLTASL 234
G G+R + R AKA + E R P G L + SL
Sbjct: 6905 GYIAGALPGLREPLMEHRVLEEEAAREEQATLLAKAPSFETALRLPASGTHLAPGHSHSL 6964
Query: 235 ECVKEETPR--------AAREPEEPSQDAPRDPAGEPAGGEEVPA---------PADRAP 277
E TPR A R P PS AP G P G +++P+ P +P
Sbjct: 6965 EHDSPSTPRPSSEACGEAQRLPSAPSGGAPIRDMGHPQGSKQLPSTGGHPGTAQPERPSP 7024
Query: 278 ARSCREAEGLAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVP---VKTVPLVD 334
+ HP A E + H P P G+ P K PLV
Sbjct: 7025 DSPWGQPAPFCHPKQGSAPQEGCSPHPAVAPCP-----------PGSFPPGSCKEAPLVP 7073
Query: 335 SEGGSGRAPAAPDPASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGP 394
S G+ A P PA PP DS G GDI + GP
Sbjct: 7074 SSPFLGQPQAPPAPAKASPP--------------------LDSKMGPGDISLPGRPKPGP 7113
Query: 395 SCDKHVPGPGKPALSKK--NPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPE 452
PG A S + + V + Q G E S D + + QE D LS +
Sbjct: 7114 CSS---PGSASQASSSQVSSLRVGSSQVGTEPGPSLDA--EGWTQEAED-LSDSTPTLQR 7167
Query: 453 PQEGA 457
PQE A
Sbjct: 7168 PQEQA 7172
Score = 33.5 bits (75), Expect = 0.65
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 25 VCRRKAEAGAGTGTLAADMDLHCDCAAETP--AAEPPSGKINKAAFKLFKKRKSGGTMPS 82
VCR + G + +D CA + P P S ++ + + F+ R G P+
Sbjct: 81 VCRARNAIGEAFAAVGLQVDAEAACAEQAPHFLLRPTSIRVREGSEATFRCRVGGSPRPA 140
Query: 83 IFGVKNKGDGKSSGPTGLVRSRTHD-GLAEVLVLESGRKEEPRGGG 127
+ K DG+ G R R + G A L + + R PR GG
Sbjct: 141 VSWSK---DGRRLGEPDGPRVRVEELGEASALRIRAAR---PRDGG 180
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 47.4 bits (111), Expect = 4e-05
Identities = 93/353 (26%), Positives = 116/353 (32%), Gaps = 92/353 (26%)
Query: 123 PRGGGDSGG-----GGGGRPNP----GPPRAAGPGG--GSLASSSVAKSHSFFSLLKKNG 171
P G G S G G G+P P GPP GP G G + L K G
Sbjct: 724 PPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPG 783
Query: 172 -RSENGKGEPVDASKAGGKQKRGLRGL--FSGMRWHRKDKRAKAEAA----------EGR 218
R E G E A + G K + GL G F G+R + D+ K E +G
Sbjct: 784 LRGEIG--EQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGE 841
Query: 219 A-PGGGLILPGS---LTASLECVKEETPRAAR-------EPE---EPSQDAPRDPAGEP- 263
A P G LPG+ T E+ P+ + EP P + P+ P G P
Sbjct: 842 AGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPG 901
Query: 264 AGGEE-----------------VPAPADRAPARSCREAEGLAHPGDTGARGEDAAGHRRA 306
A G+E V AP P S PG G RGE A
Sbjct: 902 AKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEG 961
Query: 307 EPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSADRICLMF 366
PGP R A P K D E G +P P P
Sbjct: 962 SPGPVGPRGDPGAPGLPGPPGKG---KDGEPGLRGSPGLPGP------------------ 1000
Query: 367 SDVTSLKSFDSLTGCGDIIADQEEEAGPSC---DKHVPG-PGKPALSKKNPGV 415
+ CG + + G C D+ PG PG P S+ +PG+
Sbjct: 1001 --------LGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPG-SRGDPGI 1044
Score = 32.0 bits (71), Expect = 1.9
Identities = 54/217 (24%), Positives = 66/217 (30%), Gaps = 26/217 (11%)
Query: 222 GGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSC 281
G L LPG P EP P + R P G P +P P R A
Sbjct: 533 GSLGLPGPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPG----LPGPPGRVGAPGL 588
Query: 282 REAEG-LAHPGDTGARGEDAAGHRRAEPG----PGEVRTAEDASRTGAVPVKTVP----- 331
+ G G+ G RG D + + G PG A G V P
Sbjct: 589 QGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGS 648
Query: 332 LVDSEGGSGRAPA--------APDPASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGD 383
+V EG G A AP P P P + K G
Sbjct: 649 VVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPG 708
Query: 384 IIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQG 420
++ Q GP VPGP P S PG + + G
Sbjct: 709 LLGLQ----GPPGPPGVPGPPGPGGSPGLPGEIGFPG 741
Score = 29.6 bits (65), Expect = 9.4
Identities = 66/280 (23%), Positives = 89/280 (31%), Gaps = 41/280 (14%)
Query: 89 KGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRAAGPG 148
KGD + G G SR G+ P G G G R PG P GP
Sbjct: 1024 KGDRGAPGIPGSPGSRGDPGIGVA------GPPGPSGPPGDKGSPGSRGLPGFPGPQGPA 1077
Query: 149 GGSLASSSVAK-------------SHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLR 195
G A + + S +LL K+ ++ G P G K +G+
Sbjct: 1078 GRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVP 1137
Query: 196 GLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDA 255
G K R E +G A GL P + A + + E ++ Q
Sbjct: 1138 G---------KPGREGTEGKKGEAGPPGLPGPPGI-AGPQGSQGERGADGEVGQKGDQGH 1187
Query: 256 P-----RDPAGEPA--GGEEVPAPADRAPARSCREAEGLAHP----GDTGARGEDAAGHR 304
P P G P G + + A + EG P G G GE+ R
Sbjct: 1188 PGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGR 1247
Query: 305 RAEPG-PGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAP 343
+PG PGE A + G + P G AP
Sbjct: 1248 DGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAP 1287
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 47.0 bits (110), Expect = 6e-05
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 239 EETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPG------- 291
++ RA R P E + A + A + A G +VP+P +PA A+ A
Sbjct: 344 DKRERAERPPVE-EEAAEMEGAADAAEGGKVPSPGYGSPAAGAASADTAARAAPAAPADP 402
Query: 292 DTGARGEDA-AGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDP-A 349
D+GA ED +G A+P G D +GA P P G + APA PD A
Sbjct: 403 DSGATPEDPDSGTAPADPDSGAFAADPD---SGAAP--AAPADPDSGAAPDAPADPDSGA 457
Query: 350 SVDPPSDPSA 359
+ D P+DP A
Sbjct: 458 APDAPADPDA 467
Score = 44.7 bits (104), Expect = 3e-04
Identities = 47/180 (26%), Positives = 65/180 (36%), Gaps = 14/180 (7%)
Query: 178 GEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEG-RAPGGGLILPGSLTASLEC 236
G P+ S A K++R R + + A+AAEG + P G P + AS +
Sbjct: 334 GPPIKVSGAPDKRERAER---PPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASADT 390
Query: 237 VKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGAR 296
P A +P+ S P DP + APAD + + A P
Sbjct: 391 AARAAPAAPADPD--SGATPEDP-------DSGTAPADPDSGAFAADPDSGAAPAAPADP 441
Query: 297 GEDAAGHRRAEPGPGEVRTAEDASRTGAVP-VKTVPLVDSEGGSGRAPAAPDPASVDPPS 355
AA A+P G A GA P P + APAAPD + P+
Sbjct: 442 DSGAAPDAPADPDSGAAPDAPADPDAGAAPEAPAAPAAAETRAAHVAPAAPDAGAPTAPA 501
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 46.2 bits (108), Expect = 1e-04
Identities = 92/388 (23%), Positives = 120/388 (30%), Gaps = 79/388 (20%)
Query: 90 GDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRAAG-PG 148
G+ GP G + SR +G + G EP G+ G G G P A G PG
Sbjct: 240 GEPGDPGPMGPIGSRGPEGPPG----KPGEDGEPGRNGNPGEVGFA----GSPGARGFPG 291
Query: 149 GGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDK 208
L + H K + KGE G G RG+ G R +
Sbjct: 292 APGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGM-PGERGRLGPQ 350
Query: 209 RAKAEAAEGRAPG-----GGLILPGS--LTASLECVKEETPRAAREPEEPS----QDAPR 257
A + PG G L +PGS + E P AR PE P + P
Sbjct: 351 GAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPP 410
Query: 258 DPAGEPA-----GGEEVPA-------------------PADRAPARSCREAEGLAHPGDT 293
P G P G + P P P S PGD
Sbjct: 411 GPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDP 470
Query: 294 GARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDP 353
G G + EPGP ++ + G G+ DP +V P
Sbjct: 471 GVPGFKGEAGPKGEPGPHGIQGP----------------IGPPGEEGKRGPRGDPGTVGP 514
Query: 354 PSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEE-----EAGPSCDKHVPG-PGKPA 407
P P +R + F G Q E +GP + PG PG+P
Sbjct: 515 PG-PVGER------GAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPG 567
Query: 408 LS-----KKNPGVVAYQGGGEEMASPDE 430
L NPGV +G + +P E
Sbjct: 568 LPGARGLTGNPGVQGPEGKLGPLGAPGE 595
Score = 46.2 bits (108), Expect = 1e-04
Identities = 89/340 (26%), Positives = 107/340 (31%), Gaps = 31/340 (9%)
Query: 89 KGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNP-GPPRAAGP 147
KGD S GP GL S G V L+ GR + G G GR P GP A GP
Sbjct: 869 KGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGP 928
Query: 148 GG-----GSLASSSVAKSHSFFSLLKKNGRS--ENGKGEPVDASKAGGKQKRGLRGLFSG 200
G G + + G + G G+ D + G G G +G
Sbjct: 929 AGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGP-AG 987
Query: 201 MRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPA 260
R + E PG LPG + P P
Sbjct: 988 TTGQRGIVGMPGQRGERGMPG----LPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPV 1043
Query: 261 GEPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAEPG-PGEVRTAEDA 319
GEP G E PA D P R E GD G G + PG PG V DA
Sbjct: 1044 GEP--GPEGPAGNDGTPGRDGAVGER----GDRGDPGPAGLPGSQGAPGTPGPVGAPGDA 1097
Query: 320 SRTGAVPVKTVPLVDSEGGSGRAPAAPDPASVDPPSDPSADRICLMFSDVTSLKSFDSLT 379
+ G P P+ G GRA P P D D + F L
Sbjct: 1098 GQRGD-PGSRGPI----GPPGRAGKRGLPGPQGPRGD-KGDHGDRGDRGQKGHRGFTGLQ 1151
Query: 380 GCGDIIADQEEEA-----GPSCDKHVPGPGKPALSKKNPG 414
G E+ GP + PGP P+ + NPG
Sbjct: 1152 GLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPG 1191
Score = 42.4 bits (98), Expect = 0.001
Identities = 65/248 (26%), Positives = 86/248 (34%), Gaps = 31/248 (12%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGG--GSLASSSVAKSHSFFSLLKKNGRSENGK-GE 179
P+G GG G PG P GP G GS K E G+ G
Sbjct: 223 PQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPG--------KPGEDGEPGRNGN 274
Query: 180 PVDASKAGGKQKRGLRGL--FSGMRWHRKDKRAKAEAAEGRAPGG-GLILPGSLTASLEC 236
P + AG RG G G++ HR K + E APG G P T +
Sbjct: 275 PGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGP---TGPMGA 331
Query: 237 VKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLAHPG----- 291
+ PR P E + P+ G+ P P + +PG
Sbjct: 332 MGPLGPRGM--PGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEA 389
Query: 292 -DTGARGEDAAGHRRAEPG-PGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPA 349
TGARG + +R E G PG V + GA+ P ++G +G + P
Sbjct: 390 GPTGARGPEGPQGQRGETGPPGPVGS---PGLPGAIGTDGTP--GAKGPTGSPGTSGPPG 444
Query: 350 SVDPPSDP 357
S PP P
Sbjct: 445 SAGPPGSP 452
Score = 41.6 bits (96), Expect = 0.002
Identities = 79/308 (25%), Positives = 95/308 (30%), Gaps = 58/308 (18%)
Query: 90 GDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGG-------GGGGRPNP-GP 141
G +GP GL G+A G K + G G+ G G G P P GP
Sbjct: 750 GTPGDTGPPGLQGMPGERGIAGT----PGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGP 805
Query: 142 PRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENG-------------------KGEPVD 182
P AGP G S R ENG KGEP +
Sbjct: 806 PGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGE 865
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEG-RAPGGGLILPGSLTASLECVKEET 241
+ G G +GL H + + G + P G PGS
Sbjct: 866 PGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGA 925
Query: 242 PRAAREPEEPSQDAP---------------RDPAGEPAG-GEEVPAPADRAPARSCREAE 285
P A EP ++ P R PAG P G G++ D P +
Sbjct: 926 PGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPG-----PD 980
Query: 286 GLAHP-GDTGARGEDAAGHRRAEPG----PGEVRTAEDASRTGAVPVKTVPLVDSEGGSG 340
G P G TG RG +R E G PG T TGA K P GS
Sbjct: 981 GPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSN 1040
Query: 341 RAPAAPDP 348
P P
Sbjct: 1041 GPVGEPGP 1048
Score = 38.5 bits (88), Expect = 0.020
Identities = 66/286 (23%), Positives = 90/286 (31%), Gaps = 35/286 (12%)
Query: 96 GPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRAAGPGG--GSLA 153
GP GL R G + P G GG G + PG P A GP G G
Sbjct: 657 GPPGLAGERGEQGPPGPTGFQG--LPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERG 714
Query: 154 SSSVAKSHSFFSLLKKNGRS-----ENGKGEPVDASKAGGKQKRGLRGL-----FSGMRW 203
+ L + G + + KG P + G GL+G+ +G
Sbjct: 715 NPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPG 774
Query: 204 HRKDKRAKAE-AAEGRAPGGGLI-LPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAG 261
+ D+ E AEG A G LPG L P A E + PR G
Sbjct: 775 PKGDRGGIGEKGAEGTAGNDGARGLPGPL---------GPPGPAGPTGEKGEPGPRGLVG 825
Query: 262 EPAGGEEVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAE---PGPGEVRTAED 318
P + + P + A G G +GE ++ + PGP + +
Sbjct: 826 PPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPG 885
Query: 319 ASRTGAVP-------VKTVPLVDSEGGSGRAPAAPDPASVDPPSDP 357
VP + P GS P PA P+ P
Sbjct: 886 PHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGP 931
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 45.8 bits (107), Expect = 1e-04
Identities = 48/172 (27%), Positives = 62/172 (36%), Gaps = 28/172 (16%)
Query: 73 KRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEP--RGGGDSG 130
KR+ G P + G G G R G + V + G RGGG
Sbjct: 146 KRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGS 205
Query: 131 GGGGGRPNPGPPRAAGPGGGSLASSSV-----AKSHSFFSLLKKNGR----------SEN 175
GGGG P PPRA P G A+ H+ + L ++G+ S
Sbjct: 206 EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSR 265
Query: 176 GKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGR-----APGG 222
G+G S A + G RG R D RA+ A+ R APGG
Sbjct: 266 GRGAATSVSAAARPTRGGARG------HRRADGRARGGCAQLRAGTPSAPGG 311
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 45.8 bits (107), Expect = 1e-04
Identities = 48/172 (27%), Positives = 62/172 (36%), Gaps = 28/172 (16%)
Query: 73 KRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEP--RGGGDSG 130
KR+ G P + G G G R G + V + G RGGG
Sbjct: 146 KRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGS 205
Query: 131 GGGGGRPNPGPPRAAGPGGGSLASSSV-----AKSHSFFSLLKKNGR----------SEN 175
GGGG P PPRA P G A+ H+ + L ++G+ S
Sbjct: 206 EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSR 265
Query: 176 GKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGR-----APGG 222
G+G S A + G RG R D RA+ A+ R APGG
Sbjct: 266 GRGAATSVSAAARPTRGGARG------HRRADGRARGGCAQLRAGTPSAPGG 311
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 45.8 bits (107), Expect = 1e-04
Identities = 48/172 (27%), Positives = 62/172 (36%), Gaps = 28/172 (16%)
Query: 73 KRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEP--RGGGDSG 130
KR+ G P + G G G R G + V + G RGGG
Sbjct: 146 KRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGS 205
Query: 131 GGGGGRPNPGPPRAAGPGGGSLASSSV-----AKSHSFFSLLKKNGR----------SEN 175
GGGG P PPRA P G A+ H+ + L ++G+ S
Sbjct: 206 EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSR 265
Query: 176 GKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGR-----APGG 222
G+G S A + G RG R D RA+ A+ R APGG
Sbjct: 266 GRGAATSVSAAARPTRGGARG------HRRADGRARGGCAQLRAGTPSAPGG 311
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,060,789
Number of Sequences: 37866
Number of extensions: 2282083
Number of successful extensions: 18789
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 974
Number of HSP's that attempted gapping in prelim test: 12707
Number of HSP's gapped (non-prelim): 5072
length of query: 671
length of database: 18,247,518
effective HSP length: 109
effective length of query: 562
effective length of database: 14,120,124
effective search space: 7935509688
effective search space used: 7935509688
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.