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Search of human proteins with 40288197
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40288197 GATA binding protein 6 [Homo sapiens]
(595 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40288197 GATA binding protein 6 [Homo sapiens] 1236 0.0
gi|33188461 GATA binding protein 4 [Homo sapiens] 362 e-100
gi|17998698 GATA binding protein 5 [Homo sapiens] 320 3e-87
gi|224611699 GATA binding protein 2 isoform 1 [Homo sapiens] 221 1e-57
gi|20070352 GATA binding protein 2 isoform 1 [Homo sapiens] 221 1e-57
gi|50541959 GATA binding protein 3 isoform 1 [Homo sapiens] 204 2e-52
gi|4503929 GATA binding protein 3 isoform 2 [Homo sapiens] 202 7e-52
gi|224611701 GATA binding protein 2 isoform 2 [Homo sapiens] 196 7e-50
gi|4503925 GATA binding protein 1 [Homo sapiens] 192 1e-48
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 86 1e-16
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 86 1e-16
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 86 1e-16
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 80 4e-15
gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens] 72 1e-12
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 63 9e-10
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 63 9e-10
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 63 9e-10
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 62 1e-09
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 62 1e-09
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 61 3e-09
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 60 4e-09
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 60 4e-09
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 60 7e-09
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 59 1e-08
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 59 1e-08
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 58 2e-08
gi|169636435 caudal type homeobox 2 [Homo sapiens] 58 3e-08
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 58 3e-08
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 58 3e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 57 4e-08
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 1236 bits (3198), Expect = 0.0
Identities = 595/595 (100%), Positives = 595/595 (100%)
Query: 1 MALTDGGWCLPKRFGAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNC 60
MALTDGGWCLPKRFGAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNC
Sbjct: 1 MALTDGGWCLPKRFGAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNC 60
Query: 61 GTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQ 120
GTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQ
Sbjct: 61 GTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQ 120
Query: 121 AATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAA 180
AATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAA
Sbjct: 121 AATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAA 180
Query: 181 AAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGG 240
AAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGG
Sbjct: 181 AAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGG 240
Query: 241 AAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSL 300
AAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSL
Sbjct: 241 AAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSL 300
Query: 301 AAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH 360
AAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH
Sbjct: 301 AAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH 360
Query: 361 SLQSRAGAPLPVPRGPSADLLEDLSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKM 420
SLQSRAGAPLPVPRGPSADLLEDLSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKM
Sbjct: 361 SLQSRAGAPLPVPRGPSADLLEDLSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKM 420
Query: 421 NGLSRPLIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRP 480
NGLSRPLIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRP
Sbjct: 421 NGLSRPLIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRP 480
Query: 481 LAMKKEGIQTRKRKPKNINKSKTCSGNSNNSIPMTPTSTSSNSDDCSKNTSPTTQPTASG 540
LAMKKEGIQTRKRKPKNINKSKTCSGNSNNSIPMTPTSTSSNSDDCSKNTSPTTQPTASG
Sbjct: 481 LAMKKEGIQTRKRKPKNINKSKTCSGNSNNSIPMTPTSTSSNSDDCSKNTSPTTQPTASG 540
Query: 541 AGAPVMTGAGESTNPENSELKYSGQDGLYIGVSLASPAEVTSSVRPDSWCALALA 595
AGAPVMTGAGESTNPENSELKYSGQDGLYIGVSLASPAEVTSSVRPDSWCALALA
Sbjct: 541 AGAPVMTGAGESTNPENSELKYSGQDGLYIGVSLASPAEVTSSVRPDSWCALALA 595
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 362 bits (929), Expect = e-100
Identities = 228/476 (47%), Positives = 277/476 (58%), Gaps = 70/476 (14%)
Query: 147 MYQTLAALSSQGP--AAYD-GAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPY 203
MYQ+LA ++ GP AY+ G PG F+H A AA SSPVYVPT RV S + GL Y
Sbjct: 1 MYQSLAMAANHGPPPGAYEAGGPGAFMHGAGAA-------SSPVYVPTPRVPSSVLGLSY 53
Query: 204 HLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARF 263
LQG G+G A+ GGA AS P G+ G+ G AG GA VS RF
Sbjct: 54 -LQGGGAGSAS--GGASGGSSGGAASGAGP--GTQQGSPGWSQAGADGAAYTPPPVSPRF 108
Query: 264 PYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTY 323
+ + AA AAA A SGGG++ A + GRE QY A G+Y
Sbjct: 109 SFPGTTGSLAAAAA-----AAAAREAAAYSSGGGAAGAGLAGRE-QYGRAGFA----GSY 158
Query: 324 HHHHHHHHHHPSPYSPYVGAPLTPAWPA------GPFETPVLHSLQSRAGAPLPVPRGPS 377
SPY Y+ A + +W A GPF++PVLHSL RA P R P+
Sbjct: 159 S----------SPYPAYM-ADVGASWAAAAAASAGPFDSPVLHSLPGRAN---PAARHPN 204
Query: 378 ADLLEDLSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSS 437
D+ +D SE RECVNCG++ TPLWRRDGTGHYLCNACGLY KMNG++RPLIKPQ+R+ +S
Sbjct: 205 LDMFDDFSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSAS 264
Query: 438 RRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPKN 497
RR+GLSCANC TTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAM+KEGIQTRKRKPKN
Sbjct: 265 RRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN 324
Query: 498 INKSKTCSGNSNNSIPMTPTSTSSNSDDCSKNTSPTTQPTASGAG--------------- 542
+NKSKT + S + + SSNS + + ++S +P + G
Sbjct: 325 LNKSKTPAAPSGSESLPPASGASSNSSNATTSSSEEMRPIKTEPGLSSHYGHSSSVSQTF 384
Query: 543 -APVMTGAGESTNPENSELKYSGQDGLYIGVSLASPAEVT--SSVRPDSWCALALA 595
M+G G S +P S LK S Q ASP + +S + DSW +L LA
Sbjct: 385 SVSAMSGHGPSIHPVLSALKLSPQ-------GYASPVSQSPQTSSKQDSWNSLVLA 433
>gi|17998698 GATA binding protein 5 [Homo sapiens]
Length = 397
Score = 320 bits (819), Expect = 3e-87
Identities = 198/455 (43%), Positives = 250/455 (54%), Gaps = 64/455 (14%)
Query: 147 MYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQ 206
MYQ+LA +S AAY + G F+H A A SP++VP RV SML L
Sbjct: 1 MYQSLALAASPRQAAYADS-GSFLH--------APGAGSPMFVPPARVPSMLSYL----- 46
Query: 207 GSGSGPANHAGGAGAHPGWPQ-ASADSPPYGSGGGAAGGGAAGPGGAGSAAAHV--SARF 263
SG P+ A PGW Q A+ADS A GPG AAH + F
Sbjct: 47 -SGCEPSPQPPELAARPGWAQTATADS------------SAFGPGSPHPPAAHPPGATAF 93
Query: 264 PYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTY 323
P++ SP + GSGG+ G G + A+ RE + L RP+ +Y
Sbjct: 94 PFAHSP-------------SGPGSGGSAGGRDGSAYQGALLPREQFAAPL--GRPVGTSY 138
Query: 324 HHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLHSLQSRAGAPLPVPRGPSADLLED 383
+ Y YV + +W AGPF+ VLH L R P S L E
Sbjct: 139 ----------SATYPAYVSPDVAQSWTAGPFDGSVLHGLPGRR------PTFVSDFLEEF 182
Query: 384 LSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRLGLS 443
E RECVNCG++ TPLWRRDGTGHYLCNACGLY KMNG++RPL++PQKR+ SSRR GL
Sbjct: 183 PGEGRECVNCGALSTPLWRRDGTGHYLCNACGLYHKMNGVNRPLVRPQKRLSSSRRAGLC 242
Query: 444 CANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPKNINKSKT 503
C NCHTT TTLWRRN+EGEPVCNACGLYMKLHGVPRPLAMKKE IQTRKRKPK I K++
Sbjct: 243 CTNCHTTNTTLWRRNSEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKTIAKARG 302
Query: 504 CSGNSNNSIPMTPTSTSSNSDDCSKNTSPT-TQPTASGAG-APVMTG-AGESTNPENSEL 560
SG++ N+ S++S + P+ P G AP +G +S P + E
Sbjct: 303 SSGSTRNASASPSAVASTDSSAATSKAKPSLASPVCPGPSMAPQASGQEDDSLAPGHLEF 362
Query: 561 KYSGQDGLYIGVSLASPAEVTSSVRPDSWCALALA 595
K+ +D + + + A + ++R ++WCALALA
Sbjct: 363 KFEPEDFAFPSTAPSPQAGLRGALRQEAWCALALA 397
>gi|224611699 GATA binding protein 2 isoform 1 [Homo sapiens]
Length = 480
Score = 221 bits (564), Expect = 1e-57
Identities = 153/389 (39%), Positives = 185/389 (47%), Gaps = 57/389 (14%)
Query: 144 PEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSML----- 198
P+E+ L SQG Y A A A A + SP + T G M
Sbjct: 42 PDEVDVFFNHLDSQGNPYY----------ANPAHARARVSYSPAHARLTG-GQMCRPHLL 90
Query: 199 --PGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPY----------------GSGGG 240
PGLP+ G A A A H W + P G+GGG
Sbjct: 91 HSPGLPWL---DGGKAALSAAAAHHHNPWTVSPFSKTPLHPSAAGGPGGPLSVYPGAGGG 147
Query: 241 AAGGGAAGPGGAGSAAAHVSAR-FPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSS 299
+ GG + AAH + F + P+PP G A+ S AGG + G
Sbjct: 148 SGGGSGSSVASLTPTAAHSGSHLFGFPPTPPKEVSPDPSTTGAASPASSSAGGSAARGED 207
Query: 300 LAAMGGREPQYSSL-----SAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPF 354
+ + S+ S RP T HH P+ Y YV A A +
Sbjct: 208 KDGVKYQVSLTESMKMESGSPLRPGLATMGTQPATHHPIPT-YPSYVPAA------AHDY 260
Query: 355 ETPVLHS---LQSRAGAPLPVPRGPSADLLEDLSESRECVNCGSIQTPLWRRDGTGHYLC 411
+ + H L A + P R + SE RECVNCG+ TPLWRRDGTGHYLC
Sbjct: 261 SSGLFHPGGFLGGPASSFTPKQRSKA----RSCSEGRECVNCGATATPLWRRDGTGHYLC 316
Query: 412 NACGLYSKMNGLSRPLIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLY 471
NACGLY KMNG +RPLIKP++R+ ++RR G CANC TTTTTLWRRNA G+PVCNACGLY
Sbjct: 317 NACGLYHKMNGQNRPLIKPKRRLSAARRAGTCCANCQTTTTTLWRRNANGDPVCNACGLY 376
Query: 472 MKLHGVPRPLAMKKEGIQTRKRKPKNINK 500
KLH V RPL MKKEGIQTR RK N +K
Sbjct: 377 YKLHNVNRPLTMKKEGIQTRNRKMSNKSK 405
>gi|20070352 GATA binding protein 2 isoform 1 [Homo sapiens]
Length = 480
Score = 221 bits (564), Expect = 1e-57
Identities = 153/389 (39%), Positives = 185/389 (47%), Gaps = 57/389 (14%)
Query: 144 PEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSML----- 198
P+E+ L SQG Y A A A A + SP + T G M
Sbjct: 42 PDEVDVFFNHLDSQGNPYY----------ANPAHARARVSYSPAHARLTG-GQMCRPHLL 90
Query: 199 --PGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPY----------------GSGGG 240
PGLP+ G A A A H W + P G+GGG
Sbjct: 91 HSPGLPWL---DGGKAALSAAAAHHHNPWTVSPFSKTPLHPSAAGGPGGPLSVYPGAGGG 147
Query: 241 AAGGGAAGPGGAGSAAAHVSAR-FPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSS 299
+ GG + AAH + F + P+PP G A+ S AGG + G
Sbjct: 148 SGGGSGSSVASLTPTAAHSGSHLFGFPPTPPKEVSPDPSTTGAASPASSSAGGSAARGED 207
Query: 300 LAAMGGREPQYSSL-----SAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPF 354
+ + S+ S RP T HH P+ Y YV A A +
Sbjct: 208 KDGVKYQVSLTESMKMESGSPLRPGLATMGTQPATHHPIPT-YPSYVPAA------AHDY 260
Query: 355 ETPVLHS---LQSRAGAPLPVPRGPSADLLEDLSESRECVNCGSIQTPLWRRDGTGHYLC 411
+ + H L A + P R + SE RECVNCG+ TPLWRRDGTGHYLC
Sbjct: 261 SSGLFHPGGFLGGPASSFTPKQRSKA----RSCSEGRECVNCGATATPLWRRDGTGHYLC 316
Query: 412 NACGLYSKMNGLSRPLIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLY 471
NACGLY KMNG +RPLIKP++R+ ++RR G CANC TTTTTLWRRNA G+PVCNACGLY
Sbjct: 317 NACGLYHKMNGQNRPLIKPKRRLSAARRAGTCCANCQTTTTTLWRRNANGDPVCNACGLY 376
Query: 472 MKLHGVPRPLAMKKEGIQTRKRKPKNINK 500
KLH V RPL MKKEGIQTR RK N +K
Sbjct: 377 YKLHNVNRPLTMKKEGIQTRNRKMSNKSK 405
>gi|50541959 GATA binding protein 3 isoform 1 [Homo sapiens]
Length = 444
Score = 204 bits (519), Expect = 2e-52
Identities = 108/201 (53%), Positives = 131/201 (65%), Gaps = 15/201 (7%)
Query: 332 HHP-SPYSPYVGAPLTPAWPAGPFETPVLHSLQSRAGAPLPVPRGPSADLLEDLSESREC 390
HHP + Y PYV P + +G F L P+ S+ +E REC
Sbjct: 216 HHPITTYPPYV-----PEYSSGLFPPSSLLGGSPTGFGCKSRPKARSS------TEGREC 264
Query: 391 VNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRLGLSCANCHTT 450
VNCG+ TPLWRRDGTGHYLCNACGLY KMNG +RPLIKP++R+ ++RR G SCANC TT
Sbjct: 265 VNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTT 324
Query: 451 TTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPKNINKSKTCSGNSNN 510
TTTLWRRNA G+PVCNACGLY KLH + RPL MKKEGIQTR RK +KSK C ++
Sbjct: 325 TTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS--SKSKKCK-KVHD 381
Query: 511 SIPMTPTSTSSNSDDCSKNTS 531
S+ P ++S N S++ S
Sbjct: 382 SLEDFPKNSSFNPAALSRHMS 402
>gi|4503929 GATA binding protein 3 isoform 2 [Homo sapiens]
Length = 443
Score = 202 bits (514), Expect = 7e-52
Identities = 108/201 (53%), Positives = 129/201 (64%), Gaps = 16/201 (7%)
Query: 332 HHP-SPYSPYVGAPLTPAWPAGPFETPVLHSLQSRAGAPLPVPRGPSADLLEDLSESREC 390
HHP + Y PYV P + +G F L P+ S S REC
Sbjct: 216 HHPITTYPPYV-----PEYSSGLFPPSSLLGGSPTGFGCKSRPKARS-------STGREC 263
Query: 391 VNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRLGLSCANCHTT 450
VNCG+ TPLWRRDGTGHYLCNACGLY KMNG +RPLIKP++R+ ++RR G SCANC TT
Sbjct: 264 VNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTT 323
Query: 451 TTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPKNINKSKTCSGNSNN 510
TTTLWRRNA G+PVCNACGLY KLH + RPL MKKEGIQTR RK +KSK C ++
Sbjct: 324 TTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS--SKSKKCK-KVHD 380
Query: 511 SIPMTPTSTSSNSDDCSKNTS 531
S+ P ++S N S++ S
Sbjct: 381 SLEDFPKNSSFNPAALSRHMS 401
>gi|224611701 GATA binding protein 2 isoform 2 [Homo sapiens]
Length = 466
Score = 196 bits (497), Expect = 7e-50
Identities = 146/389 (37%), Positives = 176/389 (45%), Gaps = 71/389 (18%)
Query: 144 PEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSML----- 198
P+E+ L SQG Y A A A A + SP + T G M
Sbjct: 42 PDEVDVFFNHLDSQGNPYY----------ANPAHARARVSYSPAHARLTG-GQMCRPHLL 90
Query: 199 --PGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPY----------------GSGGG 240
PGLP+ G A A A H W + P G+GGG
Sbjct: 91 HSPGLPWL---DGGKAALSAAAAHHHNPWTVSPFSKTPLHPSAAGGPGGPLSVYPGAGGG 147
Query: 241 AAGGGAAGPGGAGSAAAHVSAR-FPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSS 299
+ GG + AAH + F + P+PP G A+ S AGG + G
Sbjct: 148 SGGGSGSSVASLTPTAAHSGSHLFGFPPTPPKEVSPDPSTTGAASPASSSAGGSAARGED 207
Query: 300 LAAMGGREPQYSSL-----SAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPF 354
+ + S+ S RP T HH P+ Y YV A A +
Sbjct: 208 KDGVKYQVSLTESMKMESGSPLRPGLATMGTQPATHHPIPT-YPSYVPAA------AHDY 260
Query: 355 ETPVLHS---LQSRAGAPLPVPRGPSADLLEDLSESRECVNCGSIQTPLWRRDGTGHYLC 411
+ + H L A + P R + SE RECVNCG+ TPLWRRDGTGHYLC
Sbjct: 261 SSGLFHPGGFLGGPASSFTPKQRSKA----RSCSEGRECVNCGATATPLWRRDGTGHYLC 316
Query: 412 NACGLYSKMNGLSRPLIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLY 471
NACGLY KMNG +RPLIKP++R+ TTTTTLWRRNA G+PVCNACGLY
Sbjct: 317 NACGLYHKMNGQNRPLIKPKRRL--------------TTTTTLWRRNANGDPVCNACGLY 362
Query: 472 MKLHGVPRPLAMKKEGIQTRKRKPKNINK 500
KLH V RPL MKKEGIQTR RK N +K
Sbjct: 363 YKLHNVNRPLTMKKEGIQTRNRKMSNKSK 391
>gi|4503925 GATA binding protein 1 [Homo sapiens]
Length = 413
Score = 192 bits (487), Expect = 1e-48
Identities = 108/230 (46%), Positives = 127/230 (55%), Gaps = 27/230 (11%)
Query: 334 PSPYSPYVGAPLTPAW--PAG-PFETPVLHSLQSRAGAPLPVPRGPSADLLEDLSESREC 390
P P S Y G + + P G P + S + R PLP E+REC
Sbjct: 157 PVPNSAYGGPDFSSTFFSPTGSPLNSAAYSSPKLRGTLPLPP------------CEAREC 204
Query: 391 VNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRLGLSCANCHTT 450
VNCG+ TPLWRRD TGHYLCNACGLY KMNG +RPLI+P+KR+ S+R G C NC TT
Sbjct: 205 VNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRLIVSKRAGTQCTNCQTT 264
Query: 451 TTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPKNINKSKTCSGNSNN 510
TTTLWRRNA G+PVCNACGLY KLH V RPL M+K+GIQTR RK K K S
Sbjct: 265 TTTLWRRNASGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRGSSLGGT 324
Query: 511 SIPMTP------TSTSSNSDDCSKNTS------PTTQPTASGAGAPVMTG 548
P + S S +C + S P T G G V++G
Sbjct: 325 GAAEGPAGGFMVVAGGSGSGNCGEVASGLTLGPPGTAHLYQGLGPVVLSG 374
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 85.5 bits (210), Expect = 1e-16
Identities = 75/262 (28%), Positives = 98/262 (37%), Gaps = 40/262 (15%)
Query: 127 LLWSSR--GAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAAS 184
+ W R G P + P + L + PA A F+ A AA +A +
Sbjct: 469 MFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQA---FLDLAEPGGAAGSAEA 525
Query: 185 SPVYVPTTRVGSMLPGLPYHL--QGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAA 242
+P PG P + G GSGP AGGAG+ A +SPP GSGG +
Sbjct: 526 APP-----------PGQPPQVVANGPGSGPPPPAGGAGSR----DALFESPPGGSGGDCS 570
Query: 243 GGG--------AAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVS 294
G AAG G A + + +R P P + G G Y + + G
Sbjct: 571 AGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGK 630
Query: 295 GGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPF 354
SLA + G + P + + HHHHHHHH P P SP + P P P
Sbjct: 631 DDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSER 690
Query: 355 ETPVLHSLQSRAGAPLPVPRGP 376
P AP P P P
Sbjct: 691 HHP----------APPPPPPPP 702
Score = 33.1 bits (74), Expect = 0.74
Identities = 32/114 (28%), Positives = 38/114 (33%), Gaps = 37/114 (32%)
Query: 229 SADSPPYGSGGGAAGGG-------AAGPGGAGSAAAHVSARFPYSPSP------------ 269
+A S G+GGG AGGG AG G A A +P P P
Sbjct: 339 AAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKF 398
Query: 270 -------------PMANGA-----AREPGGYAAAGSGGAGGVSGGGSSLAAMGG 305
P A A +E G AA GGAG G + A + G
Sbjct: 399 PGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSG 452
Score = 31.6 bits (70), Expect = 2.2
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 15 GAAG-ADASDSRAFP----AREPSTPPSPISSSSSSCSRGGERGPGGAS-NCG---TPQL 65
GAAG A+A+ P A P + P P + + S E PGG+ +C TP
Sbjct: 518 GAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPA 577
Query: 66 DTEAAAGPPARSLLLSSYASHPFGAPHGPS-APGVAGPGGNLSSWEDLLLFTDLDQAATA 124
D+ AAAG A + S A APH P G GG+ D A +
Sbjct: 578 DSVAAAGAGAAAAG-SGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESL 636
Query: 125 SKLLWSSRGA 134
+KL +S GA
Sbjct: 637 AKLHGASAGA 646
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 85.5 bits (210), Expect = 1e-16
Identities = 75/262 (28%), Positives = 98/262 (37%), Gaps = 40/262 (15%)
Query: 127 LLWSSR--GAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAAS 184
+ W R G P + P + L + PA A F+ A AA +A +
Sbjct: 469 MFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQA---FLDLAEPGGAAGSAEA 525
Query: 185 SPVYVPTTRVGSMLPGLPYHL--QGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAA 242
+P PG P + G GSGP AGGAG+ A +SPP GSGG +
Sbjct: 526 APP-----------PGQPPQVVANGPGSGPPPPAGGAGSR----DALFESPPGGSGGDCS 570
Query: 243 GGG--------AAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVS 294
G AAG G A + + +R P P + G G Y + + G
Sbjct: 571 AGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGK 630
Query: 295 GGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPF 354
SLA + G + P + + HHHHHHHH P P SP + P P P
Sbjct: 631 DDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSER 690
Query: 355 ETPVLHSLQSRAGAPLPVPRGP 376
P AP P P P
Sbjct: 691 HHP----------APPPPPPPP 702
Score = 33.1 bits (74), Expect = 0.74
Identities = 32/114 (28%), Positives = 38/114 (33%), Gaps = 37/114 (32%)
Query: 229 SADSPPYGSGGGAAGGG-------AAGPGGAGSAAAHVSARFPYSPSP------------ 269
+A S G+GGG AGGG AG G A A +P P P
Sbjct: 339 AAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKF 398
Query: 270 -------------PMANGA-----AREPGGYAAAGSGGAGGVSGGGSSLAAMGG 305
P A A +E G AA GGAG G + A + G
Sbjct: 399 PGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSG 452
Score = 31.6 bits (70), Expect = 2.2
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 15 GAAG-ADASDSRAFP----AREPSTPPSPISSSSSSCSRGGERGPGGAS-NCG---TPQL 65
GAAG A+A+ P A P + P P + + S E PGG+ +C TP
Sbjct: 518 GAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPA 577
Query: 66 DTEAAAGPPARSLLLSSYASHPFGAPHGPS-APGVAGPGGNLSSWEDLLLFTDLDQAATA 124
D+ AAAG A + S A APH P G GG+ D A +
Sbjct: 578 DSVAAAGAGAAAAG-SGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESL 636
Query: 125 SKLLWSSRGA 134
+KL +S GA
Sbjct: 637 AKLHGASAGA 646
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 85.5 bits (210), Expect = 1e-16
Identities = 75/262 (28%), Positives = 98/262 (37%), Gaps = 40/262 (15%)
Query: 127 LLWSSR--GAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAAS 184
+ W R G P + P + L + PA A F+ A AA +A +
Sbjct: 469 MFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQA---FLDLAEPGGAAGSAEA 525
Query: 185 SPVYVPTTRVGSMLPGLPYHL--QGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAA 242
+P PG P + G GSGP AGGAG+ A +SPP GSGG +
Sbjct: 526 APP-----------PGQPPQVVANGPGSGPPPPAGGAGSR----DALFESPPGGSGGDCS 570
Query: 243 GGG--------AAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVS 294
G AAG G A + + +R P P + G G Y + + G
Sbjct: 571 AGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGK 630
Query: 295 GGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPF 354
SLA + G + P + + HHHHHHHH P P SP + P P P
Sbjct: 631 DDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSER 690
Query: 355 ETPVLHSLQSRAGAPLPVPRGP 376
P AP P P P
Sbjct: 691 HHP----------APPPPPPPP 702
Score = 33.1 bits (74), Expect = 0.74
Identities = 32/114 (28%), Positives = 38/114 (33%), Gaps = 37/114 (32%)
Query: 229 SADSPPYGSGGGAAGGG-------AAGPGGAGSAAAHVSARFPYSPSP------------ 269
+A S G+GGG AGGG AG G A A +P P P
Sbjct: 339 AAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKF 398
Query: 270 -------------PMANGA-----AREPGGYAAAGSGGAGGVSGGGSSLAAMGG 305
P A A +E G AA GGAG G + A + G
Sbjct: 399 PGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSG 452
Score = 31.6 bits (70), Expect = 2.2
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 15 GAAG-ADASDSRAFP----AREPSTPPSPISSSSSSCSRGGERGPGGAS-NCG---TPQL 65
GAAG A+A+ P A P + P P + + S E PGG+ +C TP
Sbjct: 518 GAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPA 577
Query: 66 DTEAAAGPPARSLLLSSYASHPFGAPHGPS-APGVAGPGGNLSSWEDLLLFTDLDQAATA 124
D+ AAAG A + S A APH P G GG+ D A +
Sbjct: 578 DSVAAAGAGAAAAG-SGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESL 636
Query: 125 SKLLWSSRGA 134
+KL +S GA
Sbjct: 637 AKLHGASAGA 646
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 80.5 bits (197), Expect = 4e-15
Identities = 64/195 (32%), Positives = 77/195 (39%), Gaps = 39/195 (20%)
Query: 173 AAAAAAAAAAASSPVYVPTTRVGSMLPGLPYH-------------LQGSGSGPANHAGGA 219
AAAAAAAAAAA+ P + + G P ++G HAG A
Sbjct: 104 AAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTA 163
Query: 220 GAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPY---SPSPPMANGAA 276
H G P PP G G GAA A +AAA +A P PP +
Sbjct: 164 LHHRGPPHLGPPPPPPHQGH-PGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLY 222
Query: 277 REPGGYAAAG--------SGGAGGVSGGGSSLAAMG---GREPQYSSLSAARPLNGTYHH 325
+PGG+ G GG GG GG SL G G P+ + HH
Sbjct: 223 SQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAE-----------HH 271
Query: 326 HHHHHHHHPSPYSPY 340
HHHHHH HP P P+
Sbjct: 272 HHHHHHAHPHPPHPH 286
Score = 55.1 bits (131), Expect = 2e-07
Identities = 79/285 (27%), Positives = 103/285 (36%), Gaps = 67/285 (23%)
Query: 49 GGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSS 108
GG G GG G+ + + A G P+ ++ S G A A GG++ S
Sbjct: 42 GGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQS------DFMQGAMA---ASNGGHMLS 92
Query: 109 ----WEDLLLFTDLDQAATASKLL-----WSSRGAKL--SPFAPEQP------------- 144
W L AA A+ + WS + SP P QP
Sbjct: 93 HAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGG 152
Query: 145 ---EEMYQTLAA-------LSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRV 194
++++ A L P + G PGG+ +AAAAAAAAAAA++ ++P+
Sbjct: 153 AGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAA-AHLPSMAG 211
Query: 195 GSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAG------ 248
G P P L S G G A PG G GGG AGGGA
Sbjct: 212 GQQPP--PQSLLYSQPGGFTVNGMLSAPPG----------PGGGGGGAGGGAQSLVHPGL 259
Query: 249 -----PGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSG 288
P A H P+ P P A G GG AG G
Sbjct: 260 VRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPG 304
Score = 35.4 bits (80), Expect = 0.15
Identities = 50/191 (26%), Positives = 59/191 (30%), Gaps = 52/191 (27%)
Query: 236 GSGGGAAGGGAAGPGGAG--------SAAAHVSARFPYSPSPP-------MANGAAREPG 280
G+GGG GGG G GGAG +AA S + PS M A G
Sbjct: 28 GAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNG 87
Query: 281 GY----------------AAAGSGGAGGV------SGGGSSLAAMGGREPQYSSLSAARP 318
G+ AAA + A V SG +A + PQ P
Sbjct: 88 GHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGP 147
Query: 319 -----------LNGTYHHHHHHHHHHPSPYSPYVGAP----LTPAWPAGPFETPVLHSLQ 363
GT HH H P P P+ G P A A L
Sbjct: 148 DVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLP 207
Query: 364 SRAGAPLPVPR 374
S AG P P+
Sbjct: 208 SMAGGQQPPPQ 218
Score = 32.3 bits (72), Expect = 1.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 260 SARFPYSPSPPM-ANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSA 315
+A PY P + A G+ A G GG GG GGG + GG +P +++++
Sbjct: 4 AASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTS 60
>gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens]
Length = 1294
Score = 72.4 bits (176), Expect = 1e-12
Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 421 NGLSRPLIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRP 480
+G ++ + Q + R G+ CANC TT T+LWR+NA G VCNACGLY KLH PRP
Sbjct: 886 SGENKSKDESQSLLRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRP 945
Query: 481 LAMKKEG-----IQTRKRKPKN 497
L + K+ I+ R RK N
Sbjct: 946 LNIIKQNNGEQIIRRRTRKRLN 967
Score = 53.5 bits (127), Expect = 5e-07
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 390 CVNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRPL 427
C NC + +T LWR++ G Y+CNACGLY K++ RPL
Sbjct: 909 CANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPL 946
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 62.8 bits (151), Expect = 9e-10
Identities = 93/364 (25%), Positives = 122/364 (33%), Gaps = 88/364 (24%)
Query: 38 PISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAP 97
P + + GG+ P G P + +A PP HP G P
Sbjct: 99 PQHGGAKDSAAGGQADPPGPPLLSKPGDEDDA---PPKMGEPAGGRYEHPGLGALGTQQP 155
Query: 98 GVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQ 157
VA PGG P A + Y + AA +S
Sbjct: 156 PVAVPGGGGG------------------------------PAAVPEFNNYYGS-AAPASG 184
Query: 158 GPAAYDG----------APG-GFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQ 206
GP G +PG G +HSA+AAAA A GSM P H +
Sbjct: 185 GPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAP-------------GSMDPLQNSH-E 230
Query: 207 GSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYS 266
G + NH +PG+ + A G GGG GGG+ G GG G A A + +
Sbjct: 231 GYPNSQCNH------YPGYSRPGAGGG--GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVA 282
Query: 267 PSPPMANGAAREPGGYAAAGSGGAGGV------SGGGSSLAAMGGREPQYSSLSAARPLN 320
+ A AA GG GS GV GGG + GG S +A
Sbjct: 283 AAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAG 342
Query: 321 GTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLHSL------QSRAGAPLPVPR 374
G + HPS +P + LT +P++ S S AP P P
Sbjct: 343 G--FQRFAGQNQHPSGATPTLNQLLTS-------PSPMMRSYGGSYPEYSSPSAPPPPPS 393
Query: 375 GPSA 378
P +
Sbjct: 394 QPQS 397
Score = 38.9 bits (89), Expect = 0.014
Identities = 52/208 (25%), Positives = 70/208 (33%), Gaps = 22/208 (10%)
Query: 148 YQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQG 207
Y L++ QG G GG S + AAA +AA + + S L
Sbjct: 307 YGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLT 366
Query: 208 SGSGPANHAGGAGAHPGWPQASADSPPYG---SGGGAAGGGAAGPGGAGSAAAHVSARFP 264
S S GG+ +P + SA PP S AAG A G A
Sbjct: 367 SPSPMMRSYGGS--YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQ 424
Query: 265 YSPSPPMANGAAREPGGYAAAGSGGAGGVSG--GGSSLAAMGGREPQYSSLSAARPLNGT 322
Y+ + P AA + + A G G G GS + M + PQ + +
Sbjct: 425 YAAASPA--WAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGS------- 475
Query: 323 YHHHHHHHHHHPSPYSPYVGAPLTPAWP 350
+ H P SPY G P P
Sbjct: 476 ------NPHSQPQQSSPYPGGSYGPPGP 497
Score = 37.7 bits (86), Expect = 0.030
Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 39/158 (24%)
Query: 214 NHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGG--------------------AG 253
N GGAG P + P +G +A GG A P G AG
Sbjct: 80 NSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAG 139
Query: 254 SAAAHVSARFPYSPSPPMA-----NGAAREPG-----GYAAAGSGGAGGVSG------GG 297
H + PP+A G A P G AA SGG GG +G GG
Sbjct: 140 GRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGG 199
Query: 298 SSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPS 335
MG +S+ +AA G+ + H +P+
Sbjct: 200 QQSPGMG---MMHSASAAAAGAPGSMDPLQNSHEGYPN 234
Score = 34.7 bits (78), Expect = 0.26
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 315 AARPLNGTYHHHHHHHHHH 333
AA P +HHHH HHHHH
Sbjct: 19 AAPPHQQHHHHHHAHHHHH 37
Score = 32.0 bits (71), Expect = 1.7
Identities = 57/278 (20%), Positives = 87/278 (31%), Gaps = 38/278 (13%)
Query: 28 PAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHP 87
P +T S +S+S S+ S+G + P A+S + H
Sbjct: 631 PTGTEATLSSAVSASGSTSSQGDQSNP--------------------AQSPFSPHASPHL 670
Query: 88 FGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEM 147
P GPS V P G+ +Q+ + S G+++ P P E
Sbjct: 671 SSIPGGPSPSPVGSPVGS-------------NQSRSGPISPASIPGSQMPPQPPGSQSES 717
Query: 148 YQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQG 207
+ ALS G G + A + + G M G+ Q
Sbjct: 718 -SSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQS 776
Query: 208 SGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSP 267
+ SG G PQ + PP SG +A GPG SA + + P P
Sbjct: 777 NSSGTY----GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQP 832
Query: 268 SPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGG 305
+ G G G ++ ++ GG
Sbjct: 833 CGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGG 870
Score = 29.6 bits (65), Expect = 8.2
Identities = 10/14 (71%), Positives = 10/14 (71%), Gaps = 4/14 (28%)
Query: 324 HHHHHH----HHHH 333
HHHHHH HHHH
Sbjct: 33 HHHHHHAHHLHHHH 46
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 62.8 bits (151), Expect = 9e-10
Identities = 93/364 (25%), Positives = 122/364 (33%), Gaps = 88/364 (24%)
Query: 38 PISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAP 97
P + + GG+ P G P + +A PP HP G P
Sbjct: 99 PQHGGAKDSAAGGQADPPGPPLLSKPGDEDDA---PPKMGEPAGGRYEHPGLGALGTQQP 155
Query: 98 GVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQ 157
VA PGG P A + Y + AA +S
Sbjct: 156 PVAVPGGGGG------------------------------PAAVPEFNNYYGS-AAPASG 184
Query: 158 GPAAYDG----------APG-GFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQ 206
GP G +PG G +HSA+AAAA A GSM P H +
Sbjct: 185 GPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAP-------------GSMDPLQNSH-E 230
Query: 207 GSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYS 266
G + NH +PG+ + A G GGG GGG+ G GG G A A + +
Sbjct: 231 GYPNSQCNH------YPGYSRPGAGGG--GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVA 282
Query: 267 PSPPMANGAAREPGGYAAAGSGGAGGV------SGGGSSLAAMGGREPQYSSLSAARPLN 320
+ A AA GG GS GV GGG + GG S +A
Sbjct: 283 AAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAG 342
Query: 321 GTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLHSL------QSRAGAPLPVPR 374
G + HPS +P + LT +P++ S S AP P P
Sbjct: 343 G--FQRFAGQNQHPSGATPTLNQLLTS-------PSPMMRSYGGSYPEYSSPSAPPPPPS 393
Query: 375 GPSA 378
P +
Sbjct: 394 QPQS 397
Score = 38.9 bits (89), Expect = 0.014
Identities = 52/208 (25%), Positives = 70/208 (33%), Gaps = 22/208 (10%)
Query: 148 YQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQG 207
Y L++ QG G GG S + AAA +AA + + S L
Sbjct: 307 YGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLT 366
Query: 208 SGSGPANHAGGAGAHPGWPQASADSPPYG---SGGGAAGGGAAGPGGAGSAAAHVSARFP 264
S S GG+ +P + SA PP S AAG A G A
Sbjct: 367 SPSPMMRSYGGS--YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQ 424
Query: 265 YSPSPPMANGAAREPGGYAAAGSGGAGGVSG--GGSSLAAMGGREPQYSSLSAARPLNGT 322
Y+ + P AA + + A G G G GS + M + PQ + +
Sbjct: 425 YAAASPA--WAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGS------- 475
Query: 323 YHHHHHHHHHHPSPYSPYVGAPLTPAWP 350
+ H P SPY G P P
Sbjct: 476 ------NPHSQPQQSSPYPGGSYGPPGP 497
Score = 37.7 bits (86), Expect = 0.030
Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 39/158 (24%)
Query: 214 NHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGG--------------------AG 253
N GGAG P + P +G +A GG A P G AG
Sbjct: 80 NSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAG 139
Query: 254 SAAAHVSARFPYSPSPPMA-----NGAAREPG-----GYAAAGSGGAGGVSG------GG 297
H + PP+A G A P G AA SGG GG +G GG
Sbjct: 140 GRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGG 199
Query: 298 SSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPS 335
MG +S+ +AA G+ + H +P+
Sbjct: 200 QQSPGMG---MMHSASAAAAGAPGSMDPLQNSHEGYPN 234
Score = 34.7 bits (78), Expect = 0.26
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 315 AARPLNGTYHHHHHHHHHH 333
AA P +HHHH HHHHH
Sbjct: 19 AAPPHQQHHHHHHAHHHHH 37
Score = 32.0 bits (71), Expect = 1.7
Identities = 57/278 (20%), Positives = 87/278 (31%), Gaps = 38/278 (13%)
Query: 28 PAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHP 87
P +T S +S+S S+ S+G + P A+S + H
Sbjct: 618 PTGTEATLSSAVSASGSTSSQGDQSNP--------------------AQSPFSPHASPHL 657
Query: 88 FGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEM 147
P GPS V P G+ +Q+ + S G+++ P P E
Sbjct: 658 SSIPGGPSPSPVGSPVGS-------------NQSRSGPISPASIPGSQMPPQPPGSQSES 704
Query: 148 YQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQG 207
+ ALS G G + A + + G M G+ Q
Sbjct: 705 -SSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQS 763
Query: 208 SGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSP 267
+ SG G PQ + PP SG +A GPG SA + + P P
Sbjct: 764 NSSGTY----GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQP 819
Query: 268 SPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGG 305
+ G G G ++ ++ GG
Sbjct: 820 CGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGG 857
Score = 29.6 bits (65), Expect = 8.2
Identities = 10/14 (71%), Positives = 10/14 (71%), Gaps = 4/14 (28%)
Query: 324 HHHHHH----HHHH 333
HHHHHH HHHH
Sbjct: 33 HHHHHHAHHLHHHH 46
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 62.8 bits (151), Expect = 9e-10
Identities = 93/364 (25%), Positives = 122/364 (33%), Gaps = 88/364 (24%)
Query: 38 PISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAP 97
P + + GG+ P G P + +A PP HP G P
Sbjct: 99 PQHGGAKDSAAGGQADPPGPPLLSKPGDEDDA---PPKMGEPAGGRYEHPGLGALGTQQP 155
Query: 98 GVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQ 157
VA PGG P A + Y + AA +S
Sbjct: 156 PVAVPGGGGG------------------------------PAAVPEFNNYYGS-AAPASG 184
Query: 158 GPAAYDG----------APG-GFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQ 206
GP G +PG G +HSA+AAAA A GSM P H +
Sbjct: 185 GPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAP-------------GSMDPLQNSH-E 230
Query: 207 GSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYS 266
G + NH +PG+ + A G GGG GGG+ G GG G A A + +
Sbjct: 231 GYPNSQCNH------YPGYSRPGAGGG--GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVA 282
Query: 267 PSPPMANGAAREPGGYAAAGSGGAGGV------SGGGSSLAAMGGREPQYSSLSAARPLN 320
+ A AA GG GS GV GGG + GG S +A
Sbjct: 283 AAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAG 342
Query: 321 GTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLHSL------QSRAGAPLPVPR 374
G + HPS +P + LT +P++ S S AP P P
Sbjct: 343 G--FQRFAGQNQHPSGATPTLNQLLTS-------PSPMMRSYGGSYPEYSSPSAPPPPPS 393
Query: 375 GPSA 378
P +
Sbjct: 394 QPQS 397
Score = 38.9 bits (89), Expect = 0.014
Identities = 52/208 (25%), Positives = 70/208 (33%), Gaps = 22/208 (10%)
Query: 148 YQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQG 207
Y L++ QG G GG S + AAA +AA + + S L
Sbjct: 307 YGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLT 366
Query: 208 SGSGPANHAGGAGAHPGWPQASADSPPYG---SGGGAAGGGAAGPGGAGSAAAHVSARFP 264
S S GG+ +P + SA PP S AAG A G A
Sbjct: 367 SPSPMMRSYGGS--YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQ 424
Query: 265 YSPSPPMANGAAREPGGYAAAGSGGAGGVSG--GGSSLAAMGGREPQYSSLSAARPLNGT 322
Y+ + P AA + + A G G G GS + M + PQ + +
Sbjct: 425 YAAASPA--WAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGS------- 475
Query: 323 YHHHHHHHHHHPSPYSPYVGAPLTPAWP 350
+ H P SPY G P P
Sbjct: 476 ------NPHSQPQQSSPYPGGSYGPPGP 497
Score = 37.7 bits (86), Expect = 0.030
Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 39/158 (24%)
Query: 214 NHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGG--------------------AG 253
N GGAG P + P +G +A GG A P G AG
Sbjct: 80 NSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAG 139
Query: 254 SAAAHVSARFPYSPSPPMA-----NGAAREPG-----GYAAAGSGGAGGVSG------GG 297
H + PP+A G A P G AA SGG GG +G GG
Sbjct: 140 GRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGG 199
Query: 298 SSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPS 335
MG +S+ +AA G+ + H +P+
Sbjct: 200 QQSPGMG---MMHSASAAAAGAPGSMDPLQNSHEGYPN 234
Score = 34.7 bits (78), Expect = 0.26
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 315 AARPLNGTYHHHHHHHHHH 333
AA P +HHHH HHHHH
Sbjct: 19 AAPPHQQHHHHHHAHHHHH 37
Score = 32.0 bits (71), Expect = 1.7
Identities = 57/278 (20%), Positives = 87/278 (31%), Gaps = 38/278 (13%)
Query: 28 PAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHP 87
P +T S +S+S S+ S+G + P A+S + H
Sbjct: 618 PTGTEATLSSAVSASGSTSSQGDQSNP--------------------AQSPFSPHASPHL 657
Query: 88 FGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEM 147
P GPS V P G+ +Q+ + S G+++ P P E
Sbjct: 658 SSIPGGPSPSPVGSPVGS-------------NQSRSGPISPASIPGSQMPPQPPGSQSES 704
Query: 148 YQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQG 207
+ ALS G G + A + + G M G+ Q
Sbjct: 705 -SSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQS 763
Query: 208 SGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSP 267
+ SG G PQ + PP SG +A GPG SA + + P P
Sbjct: 764 NSSGTY----GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQP 819
Query: 268 SPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGG 305
+ G G G ++ ++ GG
Sbjct: 820 CGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGG 857
Score = 29.6 bits (65), Expect = 8.2
Identities = 10/14 (71%), Positives = 10/14 (71%), Gaps = 4/14 (28%)
Query: 324 HHHHHH----HHHH 333
HHHHHH HHHH
Sbjct: 33 HHHHHHAHHLHHHH 46
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 62.4 bits (150), Expect = 1e-09
Identities = 87/307 (28%), Positives = 110/307 (35%), Gaps = 100/307 (32%)
Query: 71 AGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTD---LDQAATASKL 127
AGP ++ + S+A H H SA A + E L +D AA
Sbjct: 5 AGPQFPAIGVGSFARH-----HHHSAAAAAAAAAEMQDRELSLAAAQNGFVDSAA----- 54
Query: 128 LWSSRGA-KLSPFAPE-QPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASS 185
+ GA KL+P A E P + +A +SQGP AY G+ AAAAAAAAA
Sbjct: 55 --AHMGAFKLNPGAHELSPGQS----SAFTSQGPGAYPGS---------AAAAAAAAALG 99
Query: 186 PVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPY---GSGGGAA 242
P HA G++ G P S + G G A
Sbjct: 100 P----------------------------HAAHVGSYSGPPFNSTRDFLFRSRGFGDSAP 131
Query: 243 GGGAAG---PGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSS 299
GGG G PG G AH A+ G PG G G+ V G
Sbjct: 132 GGGQHGLFGPGAGGLHHAHSDAQ-----------GHLLFPGLPEQHGPHGSQNVLNGQMR 180
Query: 300 LAAMG---GREPQYSSLSAAR--------------PLN--------GTYHHHHHHHHHHP 334
L G GR QY +++ R P+N HHHHHHHHHP
Sbjct: 181 LGLPGEVFGRSEQYRQVASPRTDPYSAAQLHNQYGPMNMNMGMNMAAAAAHHHHHHHHHP 240
Query: 335 SPYSPYV 341
+ Y+
Sbjct: 241 GAFFRYM 247
Score = 45.4 bits (106), Expect = 1e-04
Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 28/132 (21%)
Query: 170 VHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQAS 229
VH ++ + ++ A+S Y +T G + P S PA A A A S
Sbjct: 414 VHESSPQGSESSPAASSGYESSTPPGLVSPSAEPQ-SSSNLSPAAAAAAAAAAAAAAAVS 472
Query: 230 ADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGG 289
A GSG G AGGG+ G G+G GG AG GG
Sbjct: 473 AVHRGGGSGSGGAGGGSGGGSGSG--------------------------GGGGGAGGGG 506
Query: 290 AGGVSGGGSSLA 301
G SGGGS A
Sbjct: 507 GGS-SGGGSGTA 517
Score = 44.7 bits (104), Expect = 2e-04
Identities = 36/110 (32%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 206 QGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPY 265
QGS S PA +G + P P + S S + AA A +AAA VSA +
Sbjct: 420 QGSESSPAASSGYESSTP--PGLVSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSA--VH 475
Query: 266 SPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSA 315
+ GA GG + +G GG G GGG S G +S LS+
Sbjct: 476 RGGGSGSGGAGGGSGGGSGSGGGGGGAGGGGGGSSGGGSGTAGGHSGLSS 525
Score = 43.9 bits (102), Expect = 4e-04
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 26/129 (20%)
Query: 130 SSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYV 189
S +G++ SP A Y++ P+A + +AAAAAAAAAAA++ V
Sbjct: 418 SPQGSESSPAASSG----YESSTPPGLVSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSA 473
Query: 190 PTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGP 249
GS G G GSG + +GG G G GG GGG++G
Sbjct: 474 VHRGGGSGSGGA-----GGGSGGGSGSGGGG---------------GGAGGG-GGGSSG- 511
Query: 250 GGAGSAAAH 258
GG+G+A H
Sbjct: 512 GGSGTAGGH 520
Score = 29.6 bits (65), Expect = 8.2
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 222 HPGWPQASADSPPYGSG-GGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPG 280
H PQ S SP SG + G P +++++S P A AA
Sbjct: 415 HESSPQGSESSPAASSGYESSTPPGLVSPSAEPQSSSNLS--------PAAAAAAAAAAA 466
Query: 281 GYAAAGSGGAGGVSGGGSSLAAMGG 305
AA + GG SG G + GG
Sbjct: 467 AAAAVSAVHRGGGSGSGGAGGGSGG 491
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 62.0 bits (149), Expect = 1e-09
Identities = 73/231 (31%), Positives = 89/231 (38%), Gaps = 60/231 (25%)
Query: 150 TLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTT--RVGSMLPGLPYHLQG 207
T A +GP G G +H AAAAAAAAAA+ ++ V ++ H +
Sbjct: 3 TTAQYLPRGPGGGAGGTGPLMHPDAAAAAAAAAAAERLHAGAAYREVQKLM-----HHEW 57
Query: 208 SGSGPANHAGGAGAHPGWPQASADSPPYGSGGGA--AGG-----GAAGPGGAGSA----- 255
G+G A H G AHP W P G GGG AGG G AG GG G A
Sbjct: 58 LGAG-AGHPVGL-AHPQW-------LPTGGGGGGDWAGGPHLEHGKAGGGGTGRADDGGG 108
Query: 256 ------------AAHVSARF-----------PYSPSPPMANGAAREPGGYAAAGSGGAGG 292
AAH A + SPSP + G +P G A + GG
Sbjct: 109 GGGFHARLVHQGAAHAGAAWAQGSTAHHLGPAMSPSPGASGGHQPQPLGLYAQAAYPGGG 168
Query: 293 VSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGA 343
G LAA GG A L+ H H PSP P++GA
Sbjct: 169 GGGLAGMLAAGGG--------GAGPGLHHALHEDGHEAQLEPSP-PPHLGA 210
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 61.2 bits (147), Expect = 3e-09
Identities = 100/383 (26%), Positives = 131/383 (34%), Gaps = 80/383 (20%)
Query: 11 PKRFGAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAA 70
P G+AG S+ R PP S++ +R G RG G P +
Sbjct: 1064 PSHHGSAGGGGGSSQGPALRYFQLPPRAASAAMYVPARSG-RGRKG------PLVKQTKV 1116
Query: 71 AGPPARSLLLSSYASHPFGAPHGPSAP----GVAGPGGNLSSWEDLLLFTDLDQAATASK 126
G P + L P +P P++P VA P S + + T + +A + S
Sbjct: 1117 EGEPQKGGGLP-----PAPSPTSPASPQPPPAVAAP----SEKNSIPIPTIIIKAPSTSS 1167
Query: 127 LLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSP 186
SS+G+ P QPE G GG S + A A + SP
Sbjct: 1168 SGRSSQGSSTEAEPPTQPEPT----------------GGGGGGGSSPSPAPAMSPVPPSP 1211
Query: 187 VYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWP-QASADSPPYGSGGGAAGGG 245
VPT P P L + A G A GW +A S + S AG
Sbjct: 1212 SPVPTPAS----PSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTD--AGDE 1265
Query: 246 AAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAA--------AGSGGAGGVSGGG 297
G GG G+ AA P P + + + + G ++A AGSG G G G
Sbjct: 1266 DGGDGGLGTGAA---------PGPRLRHSKSIDEGMFSAEPYLRLESAGSGAGYGGYGAG 1316
Query: 298 SSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAG---PF 354
S GG ++S RPL P G L PA P G
Sbjct: 1317 SRAYGGGGGSSAFTSFLPPRPL-----------------VHPLTGKALDPASPLGLALAA 1359
Query: 355 ETPVLHSLQSRAGAPLPVPRGPS 377
L GAP P PR PS
Sbjct: 1360 RERALKESSEGGGAPQPPPRPPS 1382
Score = 49.3 bits (116), Expect = 1e-05
Identities = 46/168 (27%), Positives = 56/168 (33%), Gaps = 49/168 (29%)
Query: 226 PQASADSPPYGSGGG----AAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGG 281
P+ +PP S G + GG PG G A A F PSPP +RE
Sbjct: 929 PEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFD-GPSPPDTRVGSRE--- 984
Query: 282 YAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHH---PSPYS 338
SL + PL +HH HHHHHH P P+
Sbjct: 985 -----------------------------KSLYHSGPLPPAHHHPPHHHHHHAPPPQPHH 1015
Query: 339 PYVGAPLTPAWPAG--PFETPVLHSLQS-------RAGAPLPVPRGPS 377
+ P P G P + P +L R G P P P PS
Sbjct: 1016 HHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGAPS 1063
Score = 46.6 bits (109), Expect = 6e-05
Identities = 106/426 (24%), Positives = 136/426 (31%), Gaps = 105/426 (24%)
Query: 17 AGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPAR 76
+G + DSR+ T S + SS S GG G GG + G A+GP
Sbjct: 1673 SGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAG-------VASGPE-- 1723
Query: 77 SLLLSSYASHPFG-APHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKL----LWSS 131
LL +Y ++ G A G S PG P Q T SKL L +S
Sbjct: 1724 --LLDTYVAYLDGQAFGGSSTPGPPYP----------------PQLMTPSKLRGRALGAS 1765
Query: 132 RGAKLSPFA----PEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPV 187
G + P P P ++ + G A G A A PV
Sbjct: 1766 GGLRPGPSGGLRDPVTPTSPTVSVTGAGTDGLLALRACSGPPTAGVAGGPVAVEPEVPPV 1825
Query: 188 YVPTTRVGSMLPG--LPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGS-------- 237
+PT S LP LP+ +G G P G PQASA + S
Sbjct: 1826 PLPT---ASSLPRKLLPWE-EGPGPPPPPLPGPLAQ----PQASALATVKASIISELSSK 1877
Query: 238 ----GGGAAGGGA-----AGPGGAGSA----AAHVSAR---------------------- 262
GG +A GGA G GG G + A++V R
Sbjct: 1878 LQQFGGSSAAGGALPWARGGSGGGGDSHHGGASYVPERTSSLQRQRLSDDSQSSLLSKPV 1937
Query: 263 ------FPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAA 316
+P P PP+ G P AA G+ S S+ G L
Sbjct: 1938 SSLFQNWPKPPLPPLPTGTGVSPTAAAAPGATSPSASSSSTSTRHLQGVEFEMRPPLLRR 1997
Query: 317 RPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLHSLQSRAG------APL 370
P H P P S P+ P+ P P + S AG AP+
Sbjct: 1998 APSPSLLPASEHKVSPAPRPSS----LPILPSGPLYPGLFDIRGSPTGGAGGSADPFAPV 2053
Query: 371 PVPRGP 376
VP P
Sbjct: 2054 FVPPHP 2059
Score = 38.9 bits (89), Expect = 0.014
Identities = 71/288 (24%), Positives = 93/288 (32%), Gaps = 30/288 (10%)
Query: 18 GADASDSRAFPAREP--STPPSPISSSSSSCSRGGERG-PGGASNCGTPQLDTEAAAGPP 74
G + D P P S PPSP S +S E G P P +D E
Sbjct: 1509 GPPSEDGPGVPPPSPRRSVPPSPTSPRASE-----ENGLPLLVLPPPAPSVDVEDGEFLF 1563
Query: 75 ARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGA 134
L S+ F P P PG P + + L A A L S+ +
Sbjct: 1564 VEPLPPPLEFSNSFEKPESPLTPGPPHPLPDTPAPATPLPPVPPPAVAAAPPTLDSTASS 1623
Query: 135 KLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRV 194
S Y + A +QG +A G P H A AA A ++P P
Sbjct: 1624 LTS----------YDSEVATLTQGASAAPGDP----HPPGPPAPAAPAPAAPQPGPDPPP 1669
Query: 195 GSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGS 254
G+ + S P A S G GGGA G A+GP +
Sbjct: 1670 GTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSA--GGGGGAGAGVASGPELLDT 1727
Query: 255 AAAHVSAR------FPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGG 296
A++ + P P PP ++ G A G G SGG
Sbjct: 1728 YVAYLDGQAFGGSSTPGPPYPPQLMTPSKLRGRALGASGGLRPGPSGG 1775
Score = 35.4 bits (80), Expect = 0.15
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 218 GAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAR 277
GA A PG P P A G P G S V +R S P +A
Sbjct: 1637 GASAAPGDPHPPGPPAPAAPAPAAPQPGPDPPPGTDSGIEEVDSR-SSSDHPLETISSAS 1695
Query: 278 EPGGYAAAGSGGAGGVSGGGSSLAA 302
+A G G AGG G G+ +A+
Sbjct: 1696 TLSSLSAEGGGSAGGGGGAGAGVAS 1720
Score = 35.0 bits (79), Expect = 0.20
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 223 PGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMAN---GAAREP 279
PG + A P GS G + +G+ + S R + SP A R+P
Sbjct: 454 PGAASSGAPGPTSGSQGQSQPSAPTTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQP 513
Query: 280 GGYAAAG-------SGGAGGVSGGGSSLAAMGGREPQYSSL 313
G ++ +GG GG G G SL + G R YS++
Sbjct: 514 RGRPSSSGTPREGPAGGTGGSGGPGGSLGSRGRRRKLYSAV 554
Score = 32.0 bits (71), Expect = 1.7
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 165 APGGFVHSAAAAAAAAAAASSPVYVPTTRVGS---MLPGLPYHLQGSGSGPANHAGGAGA 221
APG A + + S P PTT++ S P + H A
Sbjct: 453 APGAASSGAPGPTSGSQGQSQPS-APTTKLSSGTLRSASSPRGARARSPSRGRHPEDAKR 511
Query: 222 HPGWPQASADSPPYGSGGGAAGGGAAGPGGA 252
P +S+ +P G GG GG+ GPGG+
Sbjct: 512 QPRGRPSSSGTPREGPAGGT--GGSGGPGGS 540
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 60.5 bits (145), Expect = 4e-09
Identities = 108/399 (27%), Positives = 128/399 (32%), Gaps = 76/399 (19%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCSRG-----------GERGPGGASNC--- 60
GAAGA +D + PA PP P+ + G G RGP GA
Sbjct: 339 GAAGARGNDGQPGPAG----PPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE 394
Query: 61 -GTPQLDTEA-AAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDL 118
GTP A A+G P + + S GAP APG GP G
Sbjct: 395 PGTPGSPGPAGASGNPGTDGIPGAKGSA--GAPGIAGAPGFPGPRGPPGP---------- 442
Query: 119 DQAATASKLLWSSRGAK-LSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAA 177
Q AT G ++ F EQ + GPA GAPG A
Sbjct: 443 -QGATGPLGPKGQTGEPGIAGFKGEQGPK--------GEPGPAGPQGAPGPAGEEGKRGA 493
Query: 178 AAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGS-------GPANHAGGAGAH-----PGW 225
P+ P R G P +G GP+ AG GA+ PG
Sbjct: 494 RGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 553
Query: 226 PQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAA 285
P G G A G GP GA P PP GA +PG
Sbjct: 554 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGR--------PGPPGPQGARGQPGVMGFP 605
Query: 286 GSGGAGGVSG--------GGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPY 337
G GA G G G L + G++ AA P P P
Sbjct: 606 GPKGANGEPGKAGEKGLPGAPGLRGLPGKD---GETGAAGPPGPAGPAGERGEQGAPGP- 661
Query: 338 SPYVGAPLTPAWPAGPFETPVLHSLQSRAGAP-LPVPRG 375
S + G P P P G P + AGAP L PRG
Sbjct: 662 SGFQGLP-GPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 699
Score = 57.0 bits (136), Expect = 5e-08
Identities = 83/319 (26%), Positives = 102/319 (31%), Gaps = 47/319 (14%)
Query: 13 RFGAAGADASDSRAFPAREPSTPPSP-------ISSSSSSCSRGGERG-PGGASNCGTPQ 64
+ G +GA D R P P ++ + GE+G PG G P
Sbjct: 574 KVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPG 633
Query: 65 LDTEA-AAGPPARSLLLSSYASHPFGAPHG----PSAPGVAGPGGNLSSWEDLLLFTDLD 119
D E AAGPP + P G P PG G GG +
Sbjct: 634 KDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD-------QGVP 686
Query: 120 QAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAA 179
A A L+ RG + P P A QGP G PG A+ A
Sbjct: 687 GEAGAPGLV-GPRGERGFPGERGSP-------GAQGLQGPRGLPGTPGTDGPKGASGPAG 738
Query: 180 AAAASSPVYVPTTRVGSMLPGLPYHLQGSG-SGPANHAGGAGAH-----PGWPQASADSP 233
A P L G+P +G +GP G G PG +
Sbjct: 739 PPGAQGP---------PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 789
Query: 234 PYGSGGGAAGGGAAG----PGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGG 289
P G G A G G PG AGSA A + PP G A PG G+ G
Sbjct: 790 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG 849
Query: 290 AGGVSGGGSSLAAMGGREP 308
G +G A G + P
Sbjct: 850 EQGEAGQKGDAGAPGPQGP 868
Score = 50.8 bits (120), Expect = 3e-06
Identities = 104/393 (26%), Positives = 124/393 (31%), Gaps = 77/393 (19%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCSRG--GERGPGGASNCGTPQLDTEAAAG 72
G AG D+ A + PS P P + + +G G +GP GA+ G P G
Sbjct: 852 GEAG-QKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT--GFP--GAAGRVG 906
Query: 73 PPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSR 132
PP G+ P PG GP G D + A R
Sbjct: 907 PP--------------GSNGNPGPPGPPGPSGK-----------DGPKGA---------R 932
Query: 133 GAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAA---AAASSPVYV 189
G P +P GP G PG S A A V +
Sbjct: 933 GDSGPPGRAGEP-------GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGL 985
Query: 190 PTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGP 249
P R PGLP G A A G PG + P G G GA GP
Sbjct: 986 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045
Query: 250 GGAGSAAAHVSAR-------FPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAA 302
G AA R P +P PP + G A G G GA G G A
Sbjct: 1046 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1105
Query: 303 MGGREPQ-------YSSLSAARPLNGTYHHHHHHHHHHPSPYSPY----VGAPLTPAWPA 351
G + PQ + R L G H P P P P P+ P
Sbjct: 1106 RGIQGPQGPRGDKGEAGEPGERGLKG--HRGFTGLQGLPGPPGPSGDQGASGPAGPSGPR 1163
Query: 352 GPFETPVLHSLQSRA-GAPLPV----PRGPSAD 379
GP PV S + A G P P+ PRG S +
Sbjct: 1164 GP-PGPVGPSGKDGANGIPGPIGPPGPRGRSGE 1195
Score = 50.1 bits (118), Expect = 6e-06
Identities = 77/305 (25%), Positives = 89/305 (29%), Gaps = 17/305 (5%)
Query: 10 LPKRFGAAG-ADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTE 68
+P GA G R FP S + G GP GAS P
Sbjct: 685 VPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPP---- 740
Query: 69 AAAGPPARSLLLSSYASHPFGAPHGPSAP-GVAGPGGNLSSWEDLLLFTDLDQ----AAT 123
A GPP + + P G G GP G L + A
Sbjct: 741 GAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGAN 800
Query: 124 ASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAA 183
K G S A P E +T GPA + G PG A A
Sbjct: 801 GEKGEVGPPGPAGSAGARGAPGERGET----GPPGPAGFAGPPGADGQPGAKGEQGEAGQ 856
Query: 184 SSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAG 243
P + S PG +G A A G G+P A+ P GS G
Sbjct: 857 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP 916
Query: 244 GGAAGPGGA-GSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSG--GGSSL 300
G GP G G A + P P G A PG G G G G G L
Sbjct: 917 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 976
Query: 301 AAMGG 305
A G
Sbjct: 977 AGQRG 981
Score = 49.7 bits (117), Expect = 8e-06
Identities = 74/297 (24%), Positives = 89/297 (29%), Gaps = 44/297 (14%)
Query: 32 PSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAP 91
P PP P + RG +RG G P+ + G P G P
Sbjct: 118 PKGPPGPQGPAGEQGPRG-DRGDKGEKGAPGPR-GRDGEPGTPGNP-----------GPP 164
Query: 92 HGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTL 151
P PG G GGN ++ + D+ A ++L G P P P
Sbjct: 165 GPPGPPGPPGLGGNFAAQ----MAGGFDEKAGGAQL-----GVMQGPMGPMGPRGPPGPA 215
Query: 152 AALSSQG------------------PAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTR 193
A QG P G PG A A P R
Sbjct: 216 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR 275
Query: 194 VGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGG-- 251
PGLP G + A G PG S GS G G G G
Sbjct: 276 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRT 335
Query: 252 --AGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGR 306
AG+A A + P PP G A PG A G+ G G +G A G R
Sbjct: 336 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR 392
Score = 48.5 bits (114), Expect = 2e-05
Identities = 79/309 (25%), Positives = 98/309 (31%), Gaps = 62/309 (20%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGAS----NCGTPQLDTEAA 70
G AGA + E +P P+ RG GP GA+ N G P
Sbjct: 300 GEAGAPGVKGESGSPGENGSP-GPMGPRGLPGERG-RTGPAGAAGARGNDGQP-----GP 352
Query: 71 AGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWS 130
AGPP P G P P APG G G T ++
Sbjct: 353 AGPPG--------PVGPAGGPGFPGAPGAKGEAG-----------------PTGARGPEG 387
Query: 131 SRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPG-GFVHSAAAAAAAAAAASSPVYV 189
++G + P P P GPA G PG + A +A A A +P
Sbjct: 388 AQGPRGEPGTPGSP-------------GPAGASGNPGTDGIPGAKGSAGAPGIAGAP--- 431
Query: 190 PTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGP 249
G P P QG+ +GP G G PG + P G G A GA P
Sbjct: 432 -----GFPGPRGPPGPQGA-TGPLGPKGQTG-EPGIAGFKGEQGPKGEPGPAGPQGA--P 482
Query: 250 GGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQ 309
G AG + P P G PG G G G G G P+
Sbjct: 483 GPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPK 542
Query: 310 YSSLSAARP 318
++ RP
Sbjct: 543 GANGDPGRP 551
Score = 45.1 bits (105), Expect = 2e-04
Identities = 75/285 (26%), Positives = 92/285 (32%), Gaps = 36/285 (12%)
Query: 32 PSTPPSP--ISSSSSSCSRGGERGPGGASNCGTPQ--LDTEAAAGPPARSLLLSSYASHP 87
P PP P + + ++ GG G + G Q + GPP +
Sbjct: 166 PPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ- 224
Query: 88 FGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEM 147
G P P PGV+GP G D +A K RG P P+
Sbjct: 225 -GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKA--GERG----PPGPQGARGF 277
Query: 148 YQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQG 207
T +G Y G G A A + SP GS P P L G
Sbjct: 278 PGTPGLPGVKGHRGYPGLDGA--KGEAGAPGVKGESGSP-----GENGSPGPMGPRGLPG 330
Query: 208 SG--SGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPG-----GAGSAAAHVS 260
+GPA AG G D P +G G A GPG GA A
Sbjct: 331 ERGRTGPAGAAGARGN---------DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG 381
Query: 261 ARFPYSPSPPMAN-GAAREPGGYAAAGSGGAGGVSGGGSSLAAMG 304
AR P P G PG A+G+ G G+ G S A G
Sbjct: 382 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPG 426
Score = 44.3 bits (103), Expect = 3e-04
Identities = 98/352 (27%), Positives = 111/352 (31%), Gaps = 68/352 (19%)
Query: 35 PPSPISSSSSSCSRG--GERGPGG-ASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAP 91
PP P S+ + + G GE GP G A G P D + A A P P
Sbjct: 808 PPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAP--GP 865
Query: 92 HGPS-APGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQT 150
GPS APG GP G T K +RGA+ P A P
Sbjct: 866 QGPSGAPGPQGPTG-----------------VTGPK---GARGAQGPPGATGFP------ 899
Query: 151 LAALSSQGPAAYDGAPG--GFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGS 208
A GP +G PG G + A S P R G PGL
Sbjct: 900 -GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSG---PPGRAGE--PGL------- 946
Query: 209 GSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAG-PGGAGSAAAHVSARFPYSP 267
GPA G G PG S P G G A G G PG G FP P
Sbjct: 947 -QGPAGPPGEKG-EPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERG------FPGLP 998
Query: 268 SPPMANGAAREPGGYAAAGSGGAGGVSG--GGSSLAAMGGREPQYSSLSAARPLNGTYHH 325
P + EPG A G+ G G G G L G + S A +G
Sbjct: 999 GP------SGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGA----DGPPGR 1048
Query: 326 HHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLHSLQSRAGAPLPVPRGPS 377
+ VGAP P P P R A P GPS
Sbjct: 1049 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS 1100
Score = 42.7 bits (99), Expect = 0.001
Identities = 77/278 (27%), Positives = 89/278 (32%), Gaps = 56/278 (20%)
Query: 50 GERGPGGASNCGTPQLDTEAAA-------GPPARSLLLSSYASHPFGAPHGPSAPGVAGP 102
G RGP G G P D EA GPP P GA P PG+ G
Sbjct: 240 GPRGPPGPP--GKPGDDGEAGKPGKAGERGPPG-----------PQGARGFPGTPGLPGV 286
Query: 103 GGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAY 162
G+ + LD A + + G K +P + S GP
Sbjct: 287 KGHRG-------YPGLDGAKGEA----GAPGVKGESGSPGEN----------GSPGPMGP 325
Query: 163 DGAPGGFVHSAAAAAAAAAAASS---PVYVPTTRVGSMLPGLPYHLQGSG-SGPANHAGG 218
G PG + A AA A P P + PG P G +GP G
Sbjct: 326 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGP 385
Query: 219 AGAHPGWPQASADSPPYGSGGGAAGGGAAG----PGGAGSAAAHVSA---RFPYSPSPPM 271
GA P+ +P GS G A G G PG GSA A A FP PP
Sbjct: 386 EGAQG--PRGEPGTP--GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 441
Query: 272 ANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQ 309
GA G G G G G G PQ
Sbjct: 442 PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479
Score = 42.0 bits (97), Expect = 0.002
Identities = 66/270 (24%), Positives = 78/270 (28%), Gaps = 55/270 (20%)
Query: 49 GGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSS 108
G + PG + + G P GPP + P G P +PG GP G
Sbjct: 1005 GKQGAPGASGDRGPP-----GPVGPPG--------LTGPAGEPGREGSPGADGPPGR--- 1048
Query: 109 WEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGG 168
A K GA +P AP P S GPA G G
Sbjct: 1049 -----------DGAAGVKGDRGETGAVGAPGAPGPP----------GSPGPAGPTGKQGD 1087
Query: 169 FVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPAN-----HAGGAGAH- 222
+ A + P G P P +G P H G G
Sbjct: 1088 RGEAGAQGPMGPSG-------PAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG 1140
Query: 223 -PGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMA----NGAAR 277
PG P S D G G + G GP G P P P G A
Sbjct: 1141 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG 1200
Query: 278 EPGGYAAAGSGGAGGVSGGGSSLAAMGGRE 307
PG G G G S+ A +G RE
Sbjct: 1201 PPGNPGPPGPPGPPGPGIDMSAFAGLGPRE 1230
Score = 36.6 bits (83), Expect = 0.067
Identities = 36/138 (26%), Positives = 42/138 (30%), Gaps = 9/138 (6%)
Query: 218 GAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAR 277
G PG + + P G G GA GP G P +P PP G
Sbjct: 117 GPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPG-----TPGNPGPPGPPGPPG 171
Query: 278 EP--GGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPS 335
P GG AA G GG+ L M G P + P
Sbjct: 172 PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 231
Query: 336 PYSPYVGAPLTPAWPAGP 353
P V P+ P P GP
Sbjct: 232 --EPGVSGPMGPRGPPGP 247
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 60.5 bits (145), Expect = 4e-09
Identities = 108/399 (27%), Positives = 128/399 (32%), Gaps = 76/399 (19%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCSRG-----------GERGPGGASNC--- 60
GAAGA +D + PA PP P+ + G G RGP GA
Sbjct: 270 GAAGARGNDGQPGPAG----PPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE 325
Query: 61 -GTPQLDTEA-AAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDL 118
GTP A A+G P + + S GAP APG GP G
Sbjct: 326 PGTPGSPGPAGASGNPGTDGIPGAKGSA--GAPGIAGAPGFPGPRGPPGP---------- 373
Query: 119 DQAATASKLLWSSRGAK-LSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAA 177
Q AT G ++ F EQ + GPA GAPG A
Sbjct: 374 -QGATGPLGPKGQTGEPGIAGFKGEQGPK--------GEPGPAGPQGAPGPAGEEGKRGA 424
Query: 178 AAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGS-------GPANHAGGAGAH-----PGW 225
P+ P R G P +G GP+ AG GA+ PG
Sbjct: 425 RGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 484
Query: 226 PQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAA 285
P G G A G GP GA P PP GA +PG
Sbjct: 485 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGR--------PGPPGPQGARGQPGVMGFP 536
Query: 286 GSGGAGGVSG--------GGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPY 337
G GA G G G L + G++ AA P P P
Sbjct: 537 GPKGANGEPGKAGEKGLPGAPGLRGLPGKD---GETGAAGPPGPAGPAGERGEQGAPGP- 592
Query: 338 SPYVGAPLTPAWPAGPFETPVLHSLQSRAGAP-LPVPRG 375
S + G P P P G P + AGAP L PRG
Sbjct: 593 SGFQGLP-GPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 630
Score = 57.0 bits (136), Expect = 5e-08
Identities = 83/319 (26%), Positives = 102/319 (31%), Gaps = 47/319 (14%)
Query: 13 RFGAAGADASDSRAFPAREPSTPPSP-------ISSSSSSCSRGGERG-PGGASNCGTPQ 64
+ G +GA D R P P ++ + GE+G PG G P
Sbjct: 505 KVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPG 564
Query: 65 LDTEA-AAGPPARSLLLSSYASHPFGAPHG----PSAPGVAGPGGNLSSWEDLLLFTDLD 119
D E AAGPP + P G P PG G GG +
Sbjct: 565 KDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD-------QGVP 617
Query: 120 QAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAA 179
A A L+ RG + P P A QGP G PG A+ A
Sbjct: 618 GEAGAPGLV-GPRGERGFPGERGSP-------GAQGLQGPRGLPGTPGTDGPKGASGPAG 669
Query: 180 AAAASSPVYVPTTRVGSMLPGLPYHLQGSG-SGPANHAGGAGAH-----PGWPQASADSP 233
A P L G+P +G +GP G G PG +
Sbjct: 670 PPGAQGP---------PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 720
Query: 234 PYGSGGGAAGGGAAG----PGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGG 289
P G G A G G PG AGSA A + PP G A PG G+ G
Sbjct: 721 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG 780
Query: 290 AGGVSGGGSSLAAMGGREP 308
G +G A G + P
Sbjct: 781 EQGEAGQKGDAGAPGPQGP 799
Score = 50.8 bits (120), Expect = 3e-06
Identities = 104/393 (26%), Positives = 124/393 (31%), Gaps = 77/393 (19%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCSRG--GERGPGGASNCGTPQLDTEAAAG 72
G AG D+ A + PS P P + + +G G +GP GA+ G P G
Sbjct: 783 GEAG-QKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT--GFP--GAAGRVG 837
Query: 73 PPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSR 132
PP G+ P PG GP G D + A R
Sbjct: 838 PP--------------GSNGNPGPPGPPGPSGK-----------DGPKGA---------R 863
Query: 133 GAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAA---AAASSPVYV 189
G P +P GP G PG S A A V +
Sbjct: 864 GDSGPPGRAGEP-------GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGL 916
Query: 190 PTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGP 249
P R PGLP G A A G PG + P G G GA GP
Sbjct: 917 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976
Query: 250 GGAGSAAAHVSAR-------FPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAA 302
G AA R P +P PP + G A G G GA G G A
Sbjct: 977 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1036
Query: 303 MGGREPQ-------YSSLSAARPLNGTYHHHHHHHHHHPSPYSPY----VGAPLTPAWPA 351
G + PQ + R L G H P P P P P+ P
Sbjct: 1037 RGIQGPQGPRGDKGEAGEPGERGLKG--HRGFTGLQGLPGPPGPSGDQGASGPAGPSGPR 1094
Query: 352 GPFETPVLHSLQSRA-GAPLPV----PRGPSAD 379
GP PV S + A G P P+ PRG S +
Sbjct: 1095 GP-PGPVGPSGKDGANGIPGPIGPPGPRGRSGE 1126
Score = 50.1 bits (118), Expect = 6e-06
Identities = 77/305 (25%), Positives = 89/305 (29%), Gaps = 17/305 (5%)
Query: 10 LPKRFGAAG-ADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTE 68
+P GA G R FP S + G GP GAS P
Sbjct: 616 VPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPP---- 671
Query: 69 AAAGPPARSLLLSSYASHPFGAPHGPSAP-GVAGPGGNLSSWEDLLLFTDLDQ----AAT 123
A GPP + + P G G GP G L + A
Sbjct: 672 GAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGAN 731
Query: 124 ASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAA 183
K G S A P E +T GPA + G PG A A
Sbjct: 732 GEKGEVGPPGPAGSAGARGAPGERGET----GPPGPAGFAGPPGADGQPGAKGEQGEAGQ 787
Query: 184 SSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAG 243
P + S PG +G A A G G+P A+ P GS G
Sbjct: 788 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP 847
Query: 244 GGAAGPGGA-GSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSG--GGSSL 300
G GP G G A + P P G A PG G G G G G L
Sbjct: 848 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 907
Query: 301 AAMGG 305
A G
Sbjct: 908 AGQRG 912
Score = 49.7 bits (117), Expect = 8e-06
Identities = 74/297 (24%), Positives = 89/297 (29%), Gaps = 44/297 (14%)
Query: 32 PSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAP 91
P PP P + RG +RG G P+ + G P G P
Sbjct: 49 PKGPPGPQGPAGEQGPRG-DRGDKGEKGAPGPR-GRDGEPGTPGNP-----------GPP 95
Query: 92 HGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTL 151
P PG G GGN ++ + D+ A ++L G P P P
Sbjct: 96 GPPGPPGPPGLGGNFAAQ----MAGGFDEKAGGAQL-----GVMQGPMGPMGPRGPPGPA 146
Query: 152 AALSSQG------------------PAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTR 193
A QG P G PG A A P R
Sbjct: 147 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR 206
Query: 194 VGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGG-- 251
PGLP G + A G PG S GS G G G G
Sbjct: 207 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRT 266
Query: 252 --AGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGR 306
AG+A A + P PP G A PG A G+ G G +G A G R
Sbjct: 267 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR 323
Score = 48.5 bits (114), Expect = 2e-05
Identities = 79/309 (25%), Positives = 98/309 (31%), Gaps = 62/309 (20%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGAS----NCGTPQLDTEAA 70
G AGA + E +P P+ RG GP GA+ N G P
Sbjct: 231 GEAGAPGVKGESGSPGENGSP-GPMGPRGLPGERG-RTGPAGAAGARGNDGQP-----GP 283
Query: 71 AGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWS 130
AGPP P G P P APG G G T ++
Sbjct: 284 AGPPG--------PVGPAGGPGFPGAPGAKGEAG-----------------PTGARGPEG 318
Query: 131 SRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPG-GFVHSAAAAAAAAAAASSPVYV 189
++G + P P P GPA G PG + A +A A A +P
Sbjct: 319 AQGPRGEPGTPGSP-------------GPAGASGNPGTDGIPGAKGSAGAPGIAGAP--- 362
Query: 190 PTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGP 249
G P P QG+ +GP G G PG + P G G A GA P
Sbjct: 363 -----GFPGPRGPPGPQGA-TGPLGPKGQTG-EPGIAGFKGEQGPKGEPGPAGPQGA--P 413
Query: 250 GGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQ 309
G AG + P P G PG G G G G G P+
Sbjct: 414 GPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPK 473
Query: 310 YSSLSAARP 318
++ RP
Sbjct: 474 GANGDPGRP 482
Score = 45.1 bits (105), Expect = 2e-04
Identities = 75/285 (26%), Positives = 92/285 (32%), Gaps = 36/285 (12%)
Query: 32 PSTPPSP--ISSSSSSCSRGGERGPGGASNCGTPQ--LDTEAAAGPPARSLLLSSYASHP 87
P PP P + + ++ GG G + G Q + GPP +
Sbjct: 97 PPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ- 155
Query: 88 FGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEM 147
G P P PGV+GP G D +A K RG P P+
Sbjct: 156 -GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKA--GERG----PPGPQGARGF 208
Query: 148 YQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQG 207
T +G Y G G A A + SP GS P P L G
Sbjct: 209 PGTPGLPGVKGHRGYPGLDGA--KGEAGAPGVKGESGSP-----GENGSPGPMGPRGLPG 261
Query: 208 SG--SGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPG-----GAGSAAAHVS 260
+GPA AG G D P +G G A GPG GA A
Sbjct: 262 ERGRTGPAGAAGARGN---------DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG 312
Query: 261 ARFPYSPSPPMAN-GAAREPGGYAAAGSGGAGGVSGGGSSLAAMG 304
AR P P G PG A+G+ G G+ G S A G
Sbjct: 313 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPG 357
Score = 44.3 bits (103), Expect = 3e-04
Identities = 98/352 (27%), Positives = 111/352 (31%), Gaps = 68/352 (19%)
Query: 35 PPSPISSSSSSCSRG--GERGPGG-ASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAP 91
PP P S+ + + G GE GP G A G P D + A A P P
Sbjct: 739 PPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAP--GP 796
Query: 92 HGPS-APGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQT 150
GPS APG GP G T K +RGA+ P A P
Sbjct: 797 QGPSGAPGPQGPTG-----------------VTGPK---GARGAQGPPGATGFP------ 830
Query: 151 LAALSSQGPAAYDGAPG--GFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGS 208
A GP +G PG G + A S P R G PGL
Sbjct: 831 -GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSG---PPGRAGE--PGL------- 877
Query: 209 GSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAG-PGGAGSAAAHVSARFPYSP 267
GPA G G PG S P G G A G G PG G FP P
Sbjct: 878 -QGPAGPPGEKG-EPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERG------FPGLP 929
Query: 268 SPPMANGAAREPGGYAAAGSGGAGGVSG--GGSSLAAMGGREPQYSSLSAARPLNGTYHH 325
P + EPG A G+ G G G G L G + S A +G
Sbjct: 930 GP------SGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGA----DGPPGR 979
Query: 326 HHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLHSLQSRAGAPLPVPRGPS 377
+ VGAP P P P R A P GPS
Sbjct: 980 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS 1031
Score = 42.7 bits (99), Expect = 0.001
Identities = 77/278 (27%), Positives = 89/278 (32%), Gaps = 56/278 (20%)
Query: 50 GERGPGGASNCGTPQLDTEAAA-------GPPARSLLLSSYASHPFGAPHGPSAPGVAGP 102
G RGP G G P D EA GPP P GA P PG+ G
Sbjct: 171 GPRGPPGPP--GKPGDDGEAGKPGKAGERGPPG-----------PQGARGFPGTPGLPGV 217
Query: 103 GGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAY 162
G+ + LD A + + G K +P + S GP
Sbjct: 218 KGHRG-------YPGLDGAKGEA----GAPGVKGESGSPGEN----------GSPGPMGP 256
Query: 163 DGAPGGFVHSAAAAAAAAAAASS---PVYVPTTRVGSMLPGLPYHLQGSG-SGPANHAGG 218
G PG + A AA A P P + PG P G +GP G
Sbjct: 257 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGP 316
Query: 219 AGAHPGWPQASADSPPYGSGGGAAGGGAAG----PGGAGSAAAHVSA---RFPYSPSPPM 271
GA P+ +P GS G A G G PG GSA A A FP PP
Sbjct: 317 EGAQG--PRGEPGTP--GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 372
Query: 272 ANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQ 309
GA G G G G G G PQ
Sbjct: 373 PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410
Score = 42.0 bits (97), Expect = 0.002
Identities = 66/270 (24%), Positives = 78/270 (28%), Gaps = 55/270 (20%)
Query: 49 GGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSS 108
G + PG + + G P GPP + P G P +PG GP G
Sbjct: 936 GKQGAPGASGDRGPP-----GPVGPPG--------LTGPAGEPGREGSPGADGPPGR--- 979
Query: 109 WEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGG 168
A K GA +P AP P S GPA G G
Sbjct: 980 -----------DGAAGVKGDRGETGAVGAPGAPGPP----------GSPGPAGPTGKQGD 1018
Query: 169 FVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPAN-----HAGGAGAH- 222
+ A + P G P P +G P H G G
Sbjct: 1019 RGEAGAQGPMGPSG-------PAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG 1071
Query: 223 -PGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMA----NGAAR 277
PG P S D G G + G GP G P P P G A
Sbjct: 1072 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG 1131
Query: 278 EPGGYAAAGSGGAGGVSGGGSSLAAMGGRE 307
PG G G G S+ A +G RE
Sbjct: 1132 PPGNPGPPGPPGPPGPGIDMSAFAGLGPRE 1161
Score = 36.6 bits (83), Expect = 0.067
Identities = 36/138 (26%), Positives = 42/138 (30%), Gaps = 9/138 (6%)
Query: 218 GAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAR 277
G PG + + P G G GA GP G P +P PP G
Sbjct: 48 GPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPG-----TPGNPGPPGPPGPPG 102
Query: 278 EP--GGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPS 335
P GG AA G GG+ L M G P + P
Sbjct: 103 PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 162
Query: 336 PYSPYVGAPLTPAWPAGP 353
P V P+ P P GP
Sbjct: 163 --EPGVSGPMGPRGPPGP 178
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 59.7 bits (143), Expect = 7e-09
Identities = 102/384 (26%), Positives = 122/384 (31%), Gaps = 71/384 (18%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCSRG--GERGPGGASNCGTPQLDTEAAAG 72
G AGA PA P+ PP PI + + ++G G GP GA+ G P G
Sbjct: 830 GDAGAKGDAGPPGPAG-PAGPPGPIGNVGAPGAKGARGSAGPPGAT--GFP--GAAGRVG 884
Query: 73 PPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSR 132
PP P G P PG AG G + T + R
Sbjct: 885 PPG-----------PSGNAGPPGPPGPAGKEGGKGP-----------RGETGP----AGR 918
Query: 133 GAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTT 192
++ P P P + A GPA G PG A V +P
Sbjct: 919 PGEVGPPGPPGPAGEKGSPGA---DGPAGAPGTPG---------PQGIAGQRGVVGLPGQ 966
Query: 193 RVGSMLPGLPYHLQGSG-SGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGG 251
R PGLP G GP+ +G G PP SG A G PG
Sbjct: 967 RGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR 1026
Query: 252 AGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSG---GAGGVSGGGSSLAAMGGREP 308
GS A PP A GA PG AG G G +G + +G R P
Sbjct: 1027 DGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGP 1086
Query: 309 Q-------YSSLSAARPLNGTYHHHHHHHHHHP--SPYSPYVGAPLTPAWPAGPFETPVL 359
+ + G H P P SP P + PAGP P
Sbjct: 1087 AGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP-- 1144
Query: 360 HSLQSRAGAP-------LPVPRGP 376
AGAP LP P GP
Sbjct: 1145 ----GSAGAPGKDGLNGLPGPIGP 1164
Score = 55.8 bits (133), Expect = 1e-07
Identities = 79/302 (26%), Positives = 102/302 (33%), Gaps = 30/302 (9%)
Query: 10 LPKRFGAAG-ADASDSRAFPA-REPSTPPSPISSSSSSCSRG-----GERG-PGGASNCG 61
+P GA G + A R FP R PP P ++ + G G+ G PG + G
Sbjct: 663 VPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG 722
Query: 62 TPQLD----TEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTD 117
P L AAG P + P GA P GV G G + D
Sbjct: 723 APGLQGMPGERGAAGLPGPKGDRGD--AGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGD 780
Query: 118 LDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAA 177
++ + GA+ +P +P GPA + G PG A
Sbjct: 781 KGESGPSGPA--GPTGARGAPGDRGEP----------GPPGPAGFAGPPGADGQPGAKGE 828
Query: 178 AAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGS 237
A A P + PG ++ G+ A + G G+P A+ P G
Sbjct: 829 PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888
Query: 238 GGGAAGGGAAGP----GGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGV 293
G A G GP GG G A P PP G A E G A G GA G
Sbjct: 889 SGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGT 948
Query: 294 SG 295
G
Sbjct: 949 PG 950
Score = 54.3 bits (129), Expect = 3e-07
Identities = 89/323 (27%), Positives = 109/323 (33%), Gaps = 45/323 (13%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCS--RG--GERG-PGGASNCGTPQLD-TE 68
G +G D + A PA P SP + + RG GERG PG G D
Sbjct: 269 GFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAT 328
Query: 69 AAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLL 128
AAGPP + + P G P A G AGP G S + + A
Sbjct: 329 GAAGPPG-----PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAG--- 380
Query: 129 WSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVY 188
+ G +P A QP A + G GAPG A + P
Sbjct: 381 --AAGPAGNPGADGQP-------GAKGANGAPGIAGAPG------FPGARGPSGPQGPGG 425
Query: 189 VPTTRVGSMLPGLPYHLQGSGS-------------GPANHAGGAGAHPGWPQASADSPPY 235
P + S PG P +G+ GPA G GA G P + P
Sbjct: 426 PPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR-GEPGPTGLPGPP 484
Query: 236 GSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSG 295
G GG G PG G A A SP P G+ E G AG GA G++G
Sbjct: 485 GERGGPGSRGF--PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 542
Query: 296 GGSSLAAMGGREPQYSSLSAARP 318
S G P + RP
Sbjct: 543 SPGSPGPDGKTGPPGPAGQDGRP 565
Score = 51.6 bits (122), Expect = 2e-06
Identities = 98/368 (26%), Positives = 118/368 (32%), Gaps = 66/368 (17%)
Query: 15 GAAGADASDSRAFPAREPSTP--------PSPISSSSSSCSRGGERG-PGGASNCGTPQL 65
G G D R P P P P ++ + GERG PG G
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQAGVMGFPGP-KGAAGEPGKAGERGVPGPPGAVGPAGK 612
Query: 66 DTEAAA-GPPARSLLLSSYASH-PFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLD---- 119
D EA A GPP + P G+P PG AGP G + + DL
Sbjct: 613 DGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGP 672
Query: 120 QAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPG--------GFVH 171
A + RG + P P P ++G A GAPG G
Sbjct: 673 SGARGERGFPGERGVQ-GPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPG 731
Query: 172 SAAAA-----------AAAAAAASSP----VYVPTTRVGSMLP-GLPYHLQGSG-SGPAN 214
AA A A SP V T +G P G P SG SGPA
Sbjct: 732 ERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAG 791
Query: 215 HAGGAGA-----HPGWPQASADSPPYGSGG-----------GAAG--------GGAAGPG 250
G GA PG P + + P G+ G GA G G A PG
Sbjct: 792 PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPG 851
Query: 251 GAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQY 310
G+ A + S PP A G G G G G G GG+ P+
Sbjct: 852 PIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG 911
Query: 311 SSLSAARP 318
+ A RP
Sbjct: 912 ETGPAGRP 919
Score = 50.4 bits (119), Expect = 4e-06
Identities = 79/303 (26%), Positives = 94/303 (31%), Gaps = 56/303 (18%)
Query: 15 GAAGADASDSRAFPAREPST-----PPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEA 69
G GA S EP PP P +RG E GP G G P
Sbjct: 434 GEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARG-EPGPTGLP--GPPG----E 486
Query: 70 AAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLW 129
GP +R + + P G +PG AGP G+ + L
Sbjct: 487 RGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG-----------EAGRPGEAGLP 535
Query: 130 SSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYV 189
++G SP +P + GPA DG PG P
Sbjct: 536 GAKGLTGSPGSPGPDGKT-------GPPGPAGQDGRPG------------------PPGP 570
Query: 190 PTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAH--PGWPQASADSPPYGSGGGAAGGGAA 247
P R + + G P G A G AG PG P A + G G G A
Sbjct: 571 PGARGQAGVMGFP-----GPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 625
Query: 248 GPGGA-GSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGR 306
GP G G S F P P G A +PG G GA G SG G R
Sbjct: 626 GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGER 685
Query: 307 EPQ 309
Q
Sbjct: 686 GVQ 688
Score = 50.1 bits (118), Expect = 6e-06
Identities = 96/379 (25%), Positives = 113/379 (29%), Gaps = 57/379 (15%)
Query: 15 GAAGADASDSRAFP--------AREPSTPPSPISSSSSSCSRG--GERGPGGASN-CGTP 63
GAAG A P A+ + P P S RG G GP GA+ G P
Sbjct: 329 GAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP 388
Query: 64 QLDTEAAAGPPARSLLLSSYASHPFG-APHGPSAPG-VAGPGGNLSSWEDLLLFTDLDQA 121
D + A + ++ P P GP PG GP GN +
Sbjct: 389 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSG-----------EPG 437
Query: 122 ATASKLLWSSRGAKLSPF-----APEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAA 176
A SK GAK P P P A GP G PG +
Sbjct: 438 APGSK---GDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRG 494
Query: 177 AAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANH----AGGAGAHPGWPQASADS 232
A + P P GS P P G P A G PG P +
Sbjct: 495 FPGADGVAGPKG-PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT 553
Query: 233 PPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGG 292
P G G G GP GA A + P P A G + G G GA G
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQAGVMGF-----PGPKGAAGEPGKAGERGVPGPPGAVG 608
Query: 293 VSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAG 352
+G A G P A P P+ + G P PA P G
Sbjct: 609 PAGKDGEAGAQGPPGP-------AGPAG-------ERGEQGPAGSPGFQGLP-GPAGPPG 653
Query: 353 PFETPVLHSLQSRAGAPLP 371
P + GAP P
Sbjct: 654 EAGKPGEQGVPGDLGAPGP 672
Score = 48.9 bits (115), Expect = 1e-05
Identities = 91/346 (26%), Positives = 108/346 (31%), Gaps = 50/346 (14%)
Query: 40 SSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGV 99
S S + G GP G + P+ AGPP R + G P P PG
Sbjct: 99 SESPTDQETTGVEGPKGDTGPRGPR----GPAGPPGRDGIPGQPGLP--GPPGPPGPPGP 152
Query: 100 AGPGGNLSSWEDLLLFTDLDQAATASKLL------WSSRGAKLSPFAP-----EQPEEMY 148
G GGN + L D+ +T + RG P AP + P
Sbjct: 153 PGLGGNFAP----QLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEP 208
Query: 149 QTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTR---VGSMLPGLPYHL 205
A GP G PG A P R + LPG+ H
Sbjct: 209 GEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHR 268
Query: 206 QGSG-------SGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAH 258
SG +GPA G G+ PG A P G G GA GP GA
Sbjct: 269 GFSGLDGAKGDAGPAGPKGEPGS-PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGA 327
Query: 259 VSARFPYSPSPPM-------ANGAAREPGGYAAAGSGGAGGVSG----GGSSLAAMGGRE 307
A P P+ P A GA E G GS G GV G G + AA
Sbjct: 328 TGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGN 387
Query: 308 PQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGP 353
P A+ NG +P P P P P GP
Sbjct: 388 PGADGQPGAKGANGA-------PGIAGAPGFPGARGPSGPQGPGGP 426
Score = 47.4 bits (111), Expect = 4e-05
Identities = 78/301 (25%), Positives = 97/301 (32%), Gaps = 51/301 (16%)
Query: 15 GAAGADASDSRAFPAREPSTP-PSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGP 73
G AG S PA P TP P I+ G+RG G P +G
Sbjct: 929 GPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGP-------SGE 981
Query: 74 PARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRG 133
P + S AS G P PG+AGP G + A ++ S G
Sbjct: 982 PGKQG--PSGASGERGPPGPMGPPGLAGPPGESGR-----------EGAPGAE---GSPG 1025
Query: 134 AKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPG-----GFVHSAAAAAAAAAAASSPVY 188
SP A E GPA GAPG G V A + +
Sbjct: 1026 RDGSPGAKGDRGET----------GPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPA 1075
Query: 189 VPTTRVGSMLPGLPYHLQGSGS--------GPANHAGGAGAH--PGWPQASADSPPYGSG 238
P VG+ P P +G G H G +G PG P + + P G+
Sbjct: 1076 GPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGAS 1135
Query: 239 GGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGS 298
G A G PG AG+ P PP G + G G G G G S
Sbjct: 1136 GPAGPRGP--PGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPS 1193
Query: 299 S 299
+
Sbjct: 1194 A 1194
Score = 43.5 bits (101), Expect = 5e-04
Identities = 81/317 (25%), Positives = 101/317 (31%), Gaps = 45/317 (14%)
Query: 15 GAAGADASDSRAFPARE-----PSTPPSPISSSSSSCSRGGERGPGGA-SNCGTPQLDTE 68
GA G + R P P PP P RG E GP G G P
Sbjct: 872 GATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG-ETGPAGRPGEVGPP----- 925
Query: 69 AAAGPPARSLLLSSY-ASHPFGAPHGPSAPGVAGPGG--NLSSWEDLLLFTDLD-QAATA 124
GPP + S A P GAP P G+AG G L F L +
Sbjct: 926 ---GPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEP 982
Query: 125 SKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAAS 184
K S + P P P + +G +G+PG A +
Sbjct: 983 GKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPA 1042
Query: 185 SPVYVPTTRVGSMLPGLPYHLQGSG----------SGPANHAGGAGAH-PGWPQASADSP 233
P P PG P + +G +GPA G GA P PQ
Sbjct: 1043 GPPGAPGA------PGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG----- 1091
Query: 234 PYGSGGGAAGGGAAG-PGGAGSAAAHVSARFPYSPS---PPMANGAAREPGGYAAAGSGG 289
P G G G G G G + P SP P A+G A G +AG+ G
Sbjct: 1092 PRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPG 1151
Query: 290 AGGVSGGGSSLAAMGGR 306
G++G + G R
Sbjct: 1152 KDGLNGLPGPIGPPGPR 1168
Score = 42.4 bits (98), Expect = 0.001
Identities = 71/283 (25%), Positives = 87/283 (30%), Gaps = 54/283 (19%)
Query: 11 PKRFGAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAA 70
P + G +GA R P P P + G E PG G+P D
Sbjct: 982 PGKQGPSGASGE-------RGPPGPMGPPGLAGPPGESGREGAPGAE---GSPGRD---- 1027
Query: 71 AGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWS 130
P A+ + + P GAP P APG GP G S
Sbjct: 1028 GSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGK------------------------S 1063
Query: 131 SRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPG--GFVHSAAAAAAAAAAASSPVY 188
+ P P P + + ++GPA G G G S +
Sbjct: 1064 GDRGETGPAGPAGP------VGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQ 1117
Query: 189 VPTTRVGSMLPGLPYHLQGSG-SGPANHAGGAGAH-----PGWPQASADSPPYGSGGGAA 242
P GS PG SG +GP G AGA G P P G G A
Sbjct: 1118 GPPGPPGS--PGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAG 1175
Query: 243 GGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAA 285
G GP G SA F +S P A + G Y A
Sbjct: 1176 PVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRYYRA 1218
Score = 41.6 bits (96), Expect = 0.002
Identities = 76/286 (26%), Positives = 92/286 (32%), Gaps = 62/286 (21%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASN----CGTPQLDTEAA 70
G GA P EP P +S G GP G + G P E
Sbjct: 191 GPPGAPGPQGFQGPPGEPGEP-----GASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER- 244
Query: 71 AGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWS 130
GPP P GA P G+ G G+ F+ LD A +
Sbjct: 245 -GPPG-----------PQGARGLPGTAGLPGMKGHRG-------FSGLDGAKGDA----G 281
Query: 131 SRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVP 190
G K P +P + Q + +G G PG + A A A+ P
Sbjct: 282 PAGPKGEPGSPGENGAPGQ----MGPRGLPGERGRPGAPGPAGARGNDGATGAAGP---- 333
Query: 191 TTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAG-P 249
PG +GPA G PG A ++ P G G G G P
Sbjct: 334 --------PG--------PTGPAGPPG----FPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373
Query: 250 GGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSG 295
G G A A A P + P A GA PG A G GA G SG
Sbjct: 374 GPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG 419
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 59.3 bits (142), Expect = 1e-08
Identities = 105/404 (25%), Positives = 148/404 (36%), Gaps = 98/404 (24%)
Query: 15 GAAGADASDSRAFPAREP-------STPPSPISSSSSSCSRGGERGPGGASNCGTPQLDT 67
G G + S P EP + P P +++ + GG G G + G P
Sbjct: 81 GGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGG-GSSDGVGAPPHSA 139
Query: 68 EAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKL 127
AA PPA + FG P+G S VA + + Q +
Sbjct: 140 AAALPPPA----------YGFGQPYGRSPSAVAAAAAAVFHQQ------HGGQQSPGLAA 183
Query: 128 LWSSRGAKLSPFA-PEQ-------PEEMYQTL----AALSSQGPA-AYDGAPGGFVHSAA 174
L S G L P+A P+Q P Y + +A PA A GG S A
Sbjct: 184 LQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGA 243
Query: 175 AAAA--------AAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWP 226
AAAA +A+A+SS R G+M G GP+ GG P
Sbjct: 244 AAAAGSKPPPSSSASASSSSSSFAQQRFGAM----------GGGGPSAAGGGTPQPTATP 293
Query: 227 Q----ASADSPPYGSGGGAAGGGAAGP--GGAGSAAAHVSAR----FPYSPSPPMANGAA 276
++ S G G G + GP GGAG A ++++ + + A+G A
Sbjct: 294 TLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGA 353
Query: 277 REPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSS------LSAARPLNGTYHHHHHHH 330
++ +A G +G GGG LA R PQ SS +P GT
Sbjct: 354 QQRSHHAPMSPGSSG---GGGQPLA----RTPQPSSPMDQMGKMRPQPYGGT-------- 398
Query: 331 HHHPSPYSPYVGAPLTP----AWPAGPF--ETPVLH--SLQSRA 366
+PYS G P P +P P+ +TP + ++Q RA
Sbjct: 399 ----NPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRA 438
Score = 58.2 bits (139), Expect = 2e-08
Identities = 59/199 (29%), Positives = 79/199 (39%), Gaps = 30/199 (15%)
Query: 167 GGFVHSAAAA------AAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAG 220
GG +AAAA AAA + P P +G L G G G A GG G
Sbjct: 36 GGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPG 95
Query: 221 AHPGWPQASADS------------PPYGSGGGAAGGGAAGPGGAGSAAAHVSARF--PYS 266
A P ++ ++ PP G GGG++ G A P A +A + F PY
Sbjct: 96 AEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYG 155
Query: 267 PSPPMANGAA-----REPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNG 321
SP AA ++ GG + G A SGGG L G PQ +S P N
Sbjct: 156 RSPSAVAAAAAAVFHQQHGGQQSPGL--AALQSGGGGGLEPYAG--PQQNSHDHGFP-NH 210
Query: 322 TYHHHHHHHHHHPSPYSPY 340
Y+ ++ + +P P Y
Sbjct: 211 QYNSYYPNRSAYPPPAPAY 229
Score = 45.1 bits (105), Expect = 2e-04
Identities = 50/186 (26%), Positives = 64/186 (34%), Gaps = 34/186 (18%)
Query: 175 AAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGG-----AGAHPGWPQAS 229
AA A AAASS +G+ P P L+ + AGG A A G +A+
Sbjct: 2 AAQVAPAAASS--------LGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAA 53
Query: 230 A----DSPPYG--------------SGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPM 271
A + P G S GG GGGA GG G+ ++ P P +
Sbjct: 54 AGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPAL 113
Query: 272 ANGAAREPGGYAAAGSGGAGGVSGGGSSL---AAMGGREPQYSSLSAARPLNGTYHHHHH 328
N PGG S G G ++ A G +P S SA H H
Sbjct: 114 NNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQH 173
Query: 329 HHHHHP 334
P
Sbjct: 174 GGQQSP 179
Score = 44.7 bits (104), Expect = 2e-04
Identities = 83/301 (27%), Positives = 111/301 (36%), Gaps = 54/301 (17%)
Query: 27 FPAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASH 86
+P R PP+P + SS RGG G G A+ G+ + +A+ S SS+A
Sbjct: 216 YPNRSAYPPPAPAYALSSP--RGGTPGSGAAAAAGSKPPPSSSASA----SSSSSSFAQQ 269
Query: 87 PFGA--PHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQ- 143
FGA GPSA G P + L+Q T+ S+RG + P
Sbjct: 270 RFGAMGGGGPSAAGGGTPQPTAT--------PTLNQLLTSPS---SARGYQGYPGGDYSG 318
Query: 144 -PEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPV-----YVPTTRVGSM 197
P++ + +GPA G AAAAAAAAAAAS + P + S
Sbjct: 319 GPQD------GGAGKGPADMASQCWG----AAAAAAAAAAASGGAQQRSHHAPMSPGSSG 368
Query: 198 LPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSA-A 256
G P S P + G PQ + PY G G G G G
Sbjct: 369 GGGQPLARTPQPSSPMDQMGKMR-----PQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYG 423
Query: 257 AHVSARFPYSPSPPMANGAAREPGGYAAAGS---GGAGGVSGGGSSLAAMGGREPQYSSL 313
+ R+P + M A GG + G G SG G G+ P Y+
Sbjct: 424 SQTPQRYPMT----MQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQ-----GQTPYYNQQ 474
Query: 314 S 314
S
Sbjct: 475 S 475
Score = 37.4 bits (85), Expect = 0.039
Identities = 72/296 (24%), Positives = 97/296 (32%), Gaps = 29/296 (9%)
Query: 73 PPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLS------SWEDLLLFTDLDQAATASK 126
PP + L S+ S AP S+ G NLS S DL D T
Sbjct: 598 PPPQELSQDSFGSQASSAPSMTSSKG-GQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGA 656
Query: 127 LLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSP 186
L S G S + Q E+ + S G G + A+ A + S P
Sbjct: 657 L---SPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGP 713
Query: 187 VYVPTTRVGSMLPGLP--------YHLQGSGSGPANHAGGAGAHPGWPQ------ASADS 232
+ P G+ +P P H + S A G +P PQ SA S
Sbjct: 714 L-SPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALS 772
Query: 233 PPYGSGGGA-AGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAG 291
P SGG G G+ GS P P N A Y +AG G
Sbjct: 773 PRQPSGGQIHTGMGSYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGI 832
Query: 292 GVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTP 347
G G + G P Y +L R + + + + + P P VG+ + P
Sbjct: 833 NPMGAGGQMHGQPG-IPPYGTLPPGRMSHASMGNRPYGPNMANMP--PQVGSGMCP 885
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 59.3 bits (142), Expect = 1e-08
Identities = 105/404 (25%), Positives = 148/404 (36%), Gaps = 98/404 (24%)
Query: 15 GAAGADASDSRAFPAREP-------STPPSPISSSSSSCSRGGERGPGGASNCGTPQLDT 67
G G + S P EP + P P +++ + GG G G + G P
Sbjct: 81 GGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGG-GSSDGVGAPPHSA 139
Query: 68 EAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKL 127
AA PPA + FG P+G S VA + + Q +
Sbjct: 140 AAALPPPA----------YGFGQPYGRSPSAVAAAAAAVFHQQ------HGGQQSPGLAA 183
Query: 128 LWSSRGAKLSPFA-PEQ-------PEEMYQTL----AALSSQGPA-AYDGAPGGFVHSAA 174
L S G L P+A P+Q P Y + +A PA A GG S A
Sbjct: 184 LQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGA 243
Query: 175 AAAA--------AAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWP 226
AAAA +A+A+SS R G+M G GP+ GG P
Sbjct: 244 AAAAGSKPPPSSSASASSSSSSFAQQRFGAM----------GGGGPSAAGGGTPQPTATP 293
Query: 227 Q----ASADSPPYGSGGGAAGGGAAGP--GGAGSAAAHVSAR----FPYSPSPPMANGAA 276
++ S G G G + GP GGAG A ++++ + + A+G A
Sbjct: 294 TLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGA 353
Query: 277 REPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSS------LSAARPLNGTYHHHHHHH 330
++ +A G +G GGG LA R PQ SS +P GT
Sbjct: 354 QQRSHHAPMSPGSSG---GGGQPLA----RTPQPSSPMDQMGKMRPQPYGGT-------- 398
Query: 331 HHHPSPYSPYVGAPLTP----AWPAGPF--ETPVLH--SLQSRA 366
+PYS G P P +P P+ +TP + ++Q RA
Sbjct: 399 ----NPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRA 438
Score = 58.2 bits (139), Expect = 2e-08
Identities = 59/199 (29%), Positives = 79/199 (39%), Gaps = 30/199 (15%)
Query: 167 GGFVHSAAAA------AAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAG 220
GG +AAAA AAA + P P +G L G G G A GG G
Sbjct: 36 GGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPG 95
Query: 221 AHPGWPQASADS------------PPYGSGGGAAGGGAAGPGGAGSAAAHVSARF--PYS 266
A P ++ ++ PP G GGG++ G A P A +A + F PY
Sbjct: 96 AEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYG 155
Query: 267 PSPPMANGAA-----REPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNG 321
SP AA ++ GG + G A SGGG L G PQ +S P N
Sbjct: 156 RSPSAVAAAAAAVFHQQHGGQQSPGL--AALQSGGGGGLEPYAG--PQQNSHDHGFP-NH 210
Query: 322 TYHHHHHHHHHHPSPYSPY 340
Y+ ++ + +P P Y
Sbjct: 211 QYNSYYPNRSAYPPPAPAY 229
Score = 45.1 bits (105), Expect = 2e-04
Identities = 50/186 (26%), Positives = 64/186 (34%), Gaps = 34/186 (18%)
Query: 175 AAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGG-----AGAHPGWPQAS 229
AA A AAASS +G+ P P L+ + AGG A A G +A+
Sbjct: 2 AAQVAPAAASS--------LGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAA 53
Query: 230 A----DSPPYG--------------SGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPM 271
A + P G S GG GGGA GG G+ ++ P P +
Sbjct: 54 AGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPAL 113
Query: 272 ANGAAREPGGYAAAGSGGAGGVSGGGSSL---AAMGGREPQYSSLSAARPLNGTYHHHHH 328
N PGG S G G ++ A G +P S SA H H
Sbjct: 114 NNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQH 173
Query: 329 HHHHHP 334
P
Sbjct: 174 GGQQSP 179
Score = 44.7 bits (104), Expect = 2e-04
Identities = 83/301 (27%), Positives = 111/301 (36%), Gaps = 54/301 (17%)
Query: 27 FPAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASH 86
+P R PP+P + SS RGG G G A+ G+ + +A+ S SS+A
Sbjct: 216 YPNRSAYPPPAPAYALSSP--RGGTPGSGAAAAAGSKPPPSSSASA----SSSSSSFAQQ 269
Query: 87 PFGA--PHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQ- 143
FGA GPSA G P + L+Q T+ S+RG + P
Sbjct: 270 RFGAMGGGGPSAAGGGTPQPTAT--------PTLNQLLTSPS---SARGYQGYPGGDYSG 318
Query: 144 -PEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPV-----YVPTTRVGSM 197
P++ + +GPA G AAAAAAAAAAAS + P + S
Sbjct: 319 GPQD------GGAGKGPADMASQCWG----AAAAAAAAAAASGGAQQRSHHAPMSPGSSG 368
Query: 198 LPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSA-A 256
G P S P + G PQ + PY G G G G G
Sbjct: 369 GGGQPLARTPQPSSPMDQMGKMR-----PQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYG 423
Query: 257 AHVSARFPYSPSPPMANGAAREPGGYAAAGS---GGAGGVSGGGSSLAAMGGREPQYSSL 313
+ R+P + M A GG + G G SG G G+ P Y+
Sbjct: 424 SQTPQRYPMT----MQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQ-----GQTPYYNQQ 474
Query: 314 S 314
S
Sbjct: 475 S 475
Score = 37.4 bits (85), Expect = 0.039
Identities = 72/296 (24%), Positives = 97/296 (32%), Gaps = 29/296 (9%)
Query: 73 PPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLS------SWEDLLLFTDLDQAATASK 126
PP + L S+ S AP S+ G NLS S DL D T
Sbjct: 598 PPPQELSQDSFGSQASSAPSMTSSKG-GQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGA 656
Query: 127 LLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSP 186
L S G S + Q E+ + S G G + A+ A + S P
Sbjct: 657 L---SPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGP 713
Query: 187 VYVPTTRVGSMLPGLP--------YHLQGSGSGPANHAGGAGAHPGWPQ------ASADS 232
+ P G+ +P P H + S A G +P PQ SA S
Sbjct: 714 L-SPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALS 772
Query: 233 PPYGSGGGA-AGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAG 291
P SGG G G+ GS P P N A Y +AG G
Sbjct: 773 PRQPSGGQIHTGMGSYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGI 832
Query: 292 GVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTP 347
G G + G P Y +L R + + + + + P P VG+ + P
Sbjct: 833 NPMGAGGQMHGQPG-IPPYGTLPPGRMSHASMGNRPYGPNMANMP--PQVGSGMCP 885
Score = 32.7 bits (73), Expect = 0.97
Identities = 42/190 (22%), Positives = 59/190 (31%), Gaps = 21/190 (11%)
Query: 185 SPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGG 244
+P Y P+ M+ + Y G A G+ P S+ P G G G
Sbjct: 1208 NPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSD-----PFMSSGQGPNG-GMGDPYS 1261
Query: 245 GAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMG 304
AAGPG G+ A +PY G Y + G G S+ A
Sbjct: 1262 RAAGPG-LGNVAMGPRQHYPYG-------------GPYDRVRTEPGIGPEGNMSTGAPQP 1307
Query: 305 GREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLHSLQS 364
P P H S Y TP+ P + ++ Q
Sbjct: 1308 NLMPSNPDSGMYSPSRYPPQQQQQQQQRHDS-YGNQFSTQGTPSGSPFPSQQTTMYQQQQ 1366
Query: 365 RAGAPLPVPR 374
+ +P P+PR
Sbjct: 1367 QVSSPAPLPR 1376
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 58.2 bits (139), Expect = 2e-08
Identities = 52/156 (33%), Positives = 62/156 (39%), Gaps = 41/156 (26%)
Query: 198 LPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAA 257
L G Y G GS A AGGAGA YG+GG GG GP G G A +
Sbjct: 50 LVGGAYTYGGGGSAAATGAGGAGA-------------YGTGGP---GGPGGPAGGGGACS 93
Query: 258 HVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAAR 317
Y+ + +A G G GG GG SGG +L+A G + A R
Sbjct: 94 MGPLTGSYNVNMALAGG----------PGPGGGGGSSGGAGALSAAG-----VIRVPAHR 138
Query: 318 PLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGP 353
PL G HP P + G P P+ PA P
Sbjct: 139 PLAGAV--------AHPQPLA--TGLPTVPSVPAMP 164
Score = 37.7 bits (86), Expect = 0.030
Identities = 37/137 (27%), Positives = 47/137 (34%), Gaps = 25/137 (18%)
Query: 167 GGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWP 226
G + + +AAA A + Y G+ PG GP AGG GA P
Sbjct: 53 GAYTYGGGGSAAATGAGGAGAY------GTGGPG----------GPGGPAGGGGACSMGP 96
Query: 227 --------QASADSP-PYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAR 277
A A P P G GG + G GA G AH + P+A G
Sbjct: 97 LTGSYNVNMALAGGPGPGGGGGSSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPT 156
Query: 278 EPGGYAAAGSGGAGGVS 294
P A G G++
Sbjct: 157 VPSVPAMPGVNNLTGLT 173
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 57.8 bits (138), Expect = 3e-08
Identities = 54/146 (36%), Positives = 66/146 (45%), Gaps = 28/146 (19%)
Query: 215 HAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANG 274
H+GG P Q P Y GG AA +AAA++ + PS P A G
Sbjct: 20 HSGGLNLAP---QNFVSPPQYPDYGGYHVAAAA------AAAANLDSAQSPGPSWPAAYG 70
Query: 275 AA-RE------PGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHH 327
A RE PGG AAA + A G++GG S AAMG YSS + P HHH
Sbjct: 71 APLREDWNGYAPGGAAAAANAVAHGLNGG-SPAAAMG-----YSSPADYHP-----HHHP 119
Query: 328 HHHHHHPSPYSPYVGAPLTPAWPAGP 353
HHH HHP+ +P + L GP
Sbjct: 120 HHHPHHPAA-APSCASGLLQTLNPGP 144
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 57.8 bits (138), Expect = 3e-08
Identities = 67/255 (26%), Positives = 91/255 (35%), Gaps = 46/255 (18%)
Query: 65 LDTEAAAGPPARSLLLSSYASHPFGAPHG--PSAPGVAGPGGNLSSWEDLLLFTDLDQAA 122
++T+ R + S +S P P P +P + P S +Q A
Sbjct: 37 VETDRIISQCGRLIAGGSLSSTPMSTPCSSVPPSPSFSAPSPGSGS----------EQKA 86
Query: 123 TASKLLW-SSRGAKLSPFAPE-QPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAA 180
W + +L+P A PE+ + L + S Q +DG G AAAA A A
Sbjct: 87 HLEDYYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGA 146
Query: 181 AAA---SSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGS 237
A+ S P V S + G+G +H A H P A A
Sbjct: 147 GASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAP------ 200
Query: 238 GGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGG 297
GAAG AA GGAG A G +A G GG GG GGG
Sbjct: 201 --GAAGSAAASAGGAGGAGGG---------------------GPASAGGGGGGGGGGGGG 237
Query: 298 SSLAAMGGREPQYSS 312
+ A G P +++
Sbjct: 238 GAAGAGGALHPHHAA 252
Score = 47.4 bits (111), Expect = 4e-05
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 283 AAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHH----HHHHPSPYS 338
AAAG+G + G G + + +AA+ G ++HHHHH HHHHP+ +
Sbjct: 140 AAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGA 199
Query: 339 PYVGAPLTPAWPAG 352
P GA + A AG
Sbjct: 200 P--GAAGSAAASAG 211
Score = 42.4 bits (98), Expect = 0.001
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 273 NGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHH 332
+G AR AAA GAG GG MG S++ AA H+HHHHH
Sbjct: 129 DGYARGAQQLAAAAGAGAGASLGGSGE--EMGPAAAVVSAVIAAAAAQSGAGPHYHHHHH 186
Query: 333 HPS--PYSPYVGAP 344
H + + P GAP
Sbjct: 187 HAAGHHHHPTAGAP 200
Score = 40.0 bits (92), Expect = 0.006
Identities = 43/129 (33%), Positives = 50/129 (38%), Gaps = 17/129 (13%)
Query: 149 QTLAALSSQGPAAYDGA------PGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLP 202
Q LAA + G A G P V SA AAAAA + + P Y + G
Sbjct: 136 QQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAA---GHH 192
Query: 203 YH----LQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGG----AAGGGAAGPGGAGS 254
+H G+ A AGGAG G ASA G GGG AAG G A +
Sbjct: 193 HHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAA 252
Query: 255 AAAHVSARF 263
H RF
Sbjct: 253 GGLHFDDRF 261
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 57.8 bits (138), Expect = 3e-08
Identities = 67/255 (26%), Positives = 91/255 (35%), Gaps = 46/255 (18%)
Query: 65 LDTEAAAGPPARSLLLSSYASHPFGAPHG--PSAPGVAGPGGNLSSWEDLLLFTDLDQAA 122
++T+ R + S +S P P P +P + P S +Q A
Sbjct: 37 VETDRIISQCGRLIAGGSLSSTPMSTPCSSVPPSPSFSAPSPGSGS----------EQKA 86
Query: 123 TASKLLW-SSRGAKLSPFAPE-QPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAA 180
W + +L+P A PE+ + L + S Q +DG G AAAA A A
Sbjct: 87 HLEDYYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGA 146
Query: 181 AAA---SSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPYGS 237
A+ S P V S + G+G +H A H P A A
Sbjct: 147 GASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAP------ 200
Query: 238 GGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGG 297
GAAG AA GGAG A G +A G GG GG GGG
Sbjct: 201 --GAAGSAAASAGGAGGAGGG---------------------GPASAGGGGGGGGGGGGG 237
Query: 298 SSLAAMGGREPQYSS 312
+ A G P +++
Sbjct: 238 GAAGAGGALHPHHAA 252
Score = 47.4 bits (111), Expect = 4e-05
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 283 AAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHH----HHHHPSPYS 338
AAAG+G + G G + + +AA+ G ++HHHHH HHHHP+ +
Sbjct: 140 AAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGA 199
Query: 339 PYVGAPLTPAWPAG 352
P GA + A AG
Sbjct: 200 P--GAAGSAAASAG 211
Score = 42.4 bits (98), Expect = 0.001
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 273 NGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHH 332
+G AR AAA GAG GG MG S++ AA H+HHHHH
Sbjct: 129 DGYARGAQQLAAAAGAGAGASLGGSGE--EMGPAAAVVSAVIAAAAAQSGAGPHYHHHHH 186
Query: 333 HPS--PYSPYVGAP 344
H + + P GAP
Sbjct: 187 HAAGHHHHPTAGAP 200
Score = 40.0 bits (92), Expect = 0.006
Identities = 43/129 (33%), Positives = 50/129 (38%), Gaps = 17/129 (13%)
Query: 149 QTLAALSSQGPAAYDGA------PGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLP 202
Q LAA + G A G P V SA AAAAA + + P Y + G
Sbjct: 136 QQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAA---GHH 192
Query: 203 YH----LQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGG----AAGGGAAGPGGAGS 254
+H G+ A AGGAG G ASA G GGG AAG G A +
Sbjct: 193 HHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAA 252
Query: 255 AAAHVSARF 263
H RF
Sbjct: 253 GGLHFDDRF 261
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 57.4 bits (137), Expect = 4e-08
Identities = 85/315 (26%), Positives = 106/315 (33%), Gaps = 44/315 (13%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCSRG--GERGPGGASNC-------GTPQL 65
GAAGA +D +P PP P ++ S G GE GP G+ G P
Sbjct: 315 GAAGARGNDGARGSDGQPG-PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP 373
Query: 66 DTEAAA-GPPARSLLLSSYASHPFGAPHG-PSAPGVAG----PGGNLSSWEDLLLFTDLD 119
A A GPP + S P G P APG+ G PG ++ L +
Sbjct: 374 QGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGE 433
Query: 120 QAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAA 179
+K RG + P P ++G DG+PG A A
Sbjct: 434 PGKNGAKGEPGPRGERGEAGIPGVP----------GAKGEDGKDGSPGE--PGANGLPGA 481
Query: 180 AAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSP-----P 234
A +P G P P + G GPA G G P P+ +A P P
Sbjct: 482 AGERGAP--------GFRGPAGPNGIPGE-KGPAGERGAPG--PAGPRGAAGEPGRDGVP 530
Query: 235 YGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVS 294
G G G GPG G S P PP +G +PG G G G
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAP 590
Query: 295 GGGSSLAAMGGREPQ 309
G GG PQ
Sbjct: 591 GKNGERGGPGGPGPQ 605
Score = 54.3 bits (129), Expect = 3e-07
Identities = 101/380 (26%), Positives = 126/380 (33%), Gaps = 79/380 (20%)
Query: 32 PSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLD----TEAAAGPPARSLLLSSYASH- 86
P+ PP P RG GPG A G L + GPP S
Sbjct: 850 PAGPPGPQGVKGE---RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPG 906
Query: 87 PFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEE 146
P G P +PGV+GP G+ G K SP
Sbjct: 907 PAGNTGAPGSPGVSGPKGDA-----------------------GQPGEKGSP-------- 935
Query: 147 MYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQ 206
+QGP GAPG A A + P +P R GS PG P ++
Sbjct: 936 --------GAQGP---PGAPGPL---GIAGITGARGLAGPPGMPGPR-GS--PG-PQGVK 977
Query: 207 G-SGSGPANHAGGAGAHPGWPQ------ASADSPPYGSGGGAAG--GGAAGPGGAGSAAA 257
G SG AN G PG PQ +A P G+ G G PGG G
Sbjct: 978 GESGKPGANGLSGERGPPG-PQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGE 1036
Query: 258 HVSARFPYS---PSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLS 314
+ S P + P PP G A + G +G G G G S A G + P+
Sbjct: 1037 NGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGE 1096
Query: 315 AARPLNGTYHHHHHHHHHHPSPYSP-------YVGAPLTPAWPAGPFETPVLHSLQSRAG 367
H + +P SP +G+P PA P GP +G
Sbjct: 1097 TGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSP-GPAGPRGPVGPSGPPGKDGTSG 1155
Query: 368 APLPV-PRGPSADLLEDLSE 386
P P+ P GP + E SE
Sbjct: 1156 HPGPIGPPGPRGNRGERGSE 1175
Score = 53.5 bits (127), Expect = 5e-07
Identities = 82/312 (26%), Positives = 105/312 (33%), Gaps = 64/312 (20%)
Query: 15 GAAGADASDSRAFP--AREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEAAA- 71
G+ G SD + P ++ S P P S G PG N G P + E
Sbjct: 540 GSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP 599
Query: 72 ------GPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATAS 125
GPP ++ P GP PG GPGG D+ T
Sbjct: 600 GGPGPQGPPGKN---------GETGPQGP--PGPTGPGG--------------DKGDTG- 633
Query: 126 KLLWSSRGAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASS 185
P P+ + + GP +G PG A A A
Sbjct: 634 ---------------PPGPQGLQ---GLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKG 675
Query: 186 PVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGA--HPGWPQASADSPPYGSGGGAAG 243
P R L G P L+G G+GP GG GA PG P A+ G G G
Sbjct: 676 DAGAPGERGPPGLAGAP-GLRG-GAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGG 733
Query: 244 GGAAGPGG-----AGSAAAHVSAR-FPYSPSPPMA-NGAAREPGGYAAAGSGGAGGVSGG 296
G+ GP G G A V + P P+ P+ G A +PG G+ G G++G
Sbjct: 734 LGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGP 793
Query: 297 GSSLAAMGGREP 308
S G P
Sbjct: 794 RGSPGERGETGP 805
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/358 (24%), Positives = 108/358 (30%), Gaps = 66/358 (18%)
Query: 10 LPKRFGAAGADASDSRAFPAREPSTPPSPISSSSSSCSRGGERGPGGASNCGTPQLDTEA 69
LP G G + P + P +P GERGP G + G P L A
Sbjct: 643 LPGTGGPPGENGKPGEPGPKGDAGAPGAP--GGKGDAGAPGERGPPGLA--GAPGLRGGA 698
Query: 70 ----------AAGPPA----------------RSLLLSSYASHPFGAPHGPSAPGVAGPG 103
AAGPP R L S G P GP A GV G
Sbjct: 699 GPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKD 758
Query: 104 GNLSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPE------QPEEMYQTLAALSSQ 157
G + Q +G +P P P E +T
Sbjct: 759 GPRGPTGPIGPPGPAGQPG--------DKGEGGAPGLPGIAGPRGSPGERGET----GPP 806
Query: 158 GPAAYDGAPG-----GFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGS---- 208
GPA + GAPG G A V P G P P ++G
Sbjct: 807 GPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSP 866
Query: 209 -GSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGG-------AGSAAAHVS 260
G G A G G PG P ++ + P G G G GP G G +
Sbjct: 867 GGPGAAGFPGARGL-PGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGD 925
Query: 261 ARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSAARP 318
A P P A G PG AG GA G++G G PQ + +P
Sbjct: 926 AGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKP 983
Score = 47.4 bits (111), Expect = 4e-05
Identities = 73/305 (23%), Positives = 87/305 (28%), Gaps = 60/305 (19%)
Query: 28 PAREPSTPPSPISSSSSSCSRGGERG----PGGASNCGTPQLDTEAAAGPPARSLLLSSY 83
P +P P P R G+ G PG + G P + GP S SY
Sbjct: 107 PKGDPGPPGIP--------GRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSY 158
Query: 84 ASH-------------PFGAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAATASKLLWS 130
P G P P PG +G G+ S
Sbjct: 159 DVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGS---------------------- 196
Query: 131 SRGAKLSPFAPEQ--PEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVY 188
G + P P Q P A+ GPA DG G P
Sbjct: 197 -PGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAG 255
Query: 189 VPTTRVGSMLPGLPYHLQGSG-SGPANHAGGAG--AHPGWPQASADSPPYGSGGGAAGGG 245
+P PG+ H G +G G G G P + P G G G
Sbjct: 256 IPG------FPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERG 309
Query: 246 AAGPGGAGSAAAHVSAR-FPYSPSPPMANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMG 304
G GA A + AR P PP G A PG A G G G G + G
Sbjct: 310 RPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRG 369
Query: 305 GREPQ 309
PQ
Sbjct: 370 EPGPQ 374
Score = 47.4 bits (111), Expect = 4e-05
Identities = 80/320 (25%), Positives = 96/320 (30%), Gaps = 67/320 (20%)
Query: 15 GAAGADASDSRAFPAREPSTPPSPISSSSSSCS--RG--------GERGPGGASNCGTPQ 64
G GA D + EP P ++ RG GE+GP G P
Sbjct: 456 GVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPA 515
Query: 65 LDTEAAAGPPARSLLLSSYASHPF-GAPHGPSAPGVAGPGGNLSSWEDLLLFTDLDQAAT 123
AAG P R + G+P GP + G GP G+
Sbjct: 516 -GPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGE--------------- 559
Query: 124 ASKLLWSSRGAKLSPFAPE-QPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAA 182
S R P P QP + GP DGAPG
Sbjct: 560 ------SGRPGPPGPSGPRGQP-------GVMGFPGPKGNDGAPGKNGERGGPGGPGPQG 606
Query: 183 ASSPVYVPTTRVGSMLPGLPYHLQGSG-----SGPANHAGGAGAHPGWPQASADSPPYGS 237
P + G P P G G +GP G G PG ++ G
Sbjct: 607 -------PPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGL-PGTGGPPGENGKPGE 658
Query: 238 GGGAAGGGAAG-PGGAGSAAAHVSARFP------------YSPSPPMANGAAREPGGYAA 284
G GA G PGG G A A P P P GAA PG A
Sbjct: 659 PGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGA 718
Query: 285 AGSGGAGGVSGGGSSLAAMG 304
AG+ G G+ G L + G
Sbjct: 719 AGTPGLQGMPGERGGLGSPG 738
Score = 46.2 bits (108), Expect = 8e-05
Identities = 86/333 (25%), Positives = 103/333 (30%), Gaps = 41/333 (12%)
Query: 15 GAAGADASDSRAFPAREPSTPPSP-ISSSSSSCSRGGERG-PGGASNCGTPQ-------L 65
G +G+ D PA P SP +S + GE+G PG G P
Sbjct: 894 GPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGIT 953
Query: 66 DTEAAAGPPARSLLLSSYA----------------SHPFGAPHGPSAPGVAG----PGGN 105
AGPP S S G P PG+AG PG +
Sbjct: 954 GARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRD 1013
Query: 106 LSSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTLAA--LSSQGPAAYD 163
+ D L D + S GA +P P P + + GPA
Sbjct: 1014 GNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPA 1073
Query: 164 GAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPYHLQGSGS-GPANHAGGAGAH 222
GAPG A G P + GS GPA G G+
Sbjct: 1074 GAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSP 1133
Query: 223 -PGWPQASAD-SPPYGSGGGAAGGGAAGP-GGAGSAAAHVSARFPYSPSPPMANGAAREP 279
P P+ S P G G + G GP G G+ S P P P G P
Sbjct: 1134 GPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAP 1193
Query: 280 ----GGYAAAGSGGAGGVSGGGSSLAAMGGREP 308
GG AA G GG GG A G EP
Sbjct: 1194 GPCCGGVGAAAIAGIGGEKAGG--FAPYYGDEP 1224
Score = 36.2 bits (82), Expect = 0.088
Identities = 52/182 (28%), Positives = 60/182 (32%), Gaps = 29/182 (15%)
Query: 144 PEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPY 203
PE + A+ Q P A P G P +P +PG P
Sbjct: 77 PEIPFGECCAVCPQPPTAPTRPPNG------QGPQGPKGDPGPPGIPGRNGDPGIPGQP- 129
Query: 204 HLQGSGSGPANHAGGAGAHPGWPQASADSPPYGS----GGGAAGGGAAGPGGAGSAAAHV 259
GS P G + P PQ SP Y S G A GG A PG AG
Sbjct: 130 ---GSPGSPGP-PGICESCPTGPQNY--SPQYDSYDVKSGVAVGGLAGYPGPAGP----- 178
Query: 260 SARFPYSPSPPMANGAAREPG--GYAAA-GSGGAGGVSGGGSSLAAMGGREPQYSSLSAA 316
P P PP +G PG GY G G G SG A+G P +
Sbjct: 179 ----PGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG 234
Query: 317 RP 318
RP
Sbjct: 235 RP 236
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,847,413
Number of Sequences: 37866
Number of extensions: 1978544
Number of successful extensions: 31343
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 1067
Number of HSP's that attempted gapping in prelim test: 13268
Number of HSP's gapped (non-prelim): 9469
length of query: 595
length of database: 18,247,518
effective HSP length: 108
effective length of query: 487
effective length of database: 14,157,990
effective search space: 6894941130
effective search space used: 6894941130
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.