AGFG1 27110

Name: AGFG1	Sequence: fasta or formatted (562aa)		NCBI GI: 38570132
Description: HIV-1 Rev binding protein isoform 2		Referenced in: Nucleus and Nucleolus
Other entries for this name: alt prot [584aa] HIV-1 Rev binding protein isoform 1 alt prot [560aa] HIV-1 Rev binding protein isoform 3 alt prot [522aa] HIV-1 Rev binding protein isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.8 72 3 C cysteine 0.9 5 1 D aspartate 3.6 20 2 E glutamate 2.1 12 2 F phenylalanine 7.7 43 1 G glycine 8.0 45 2 H histidine 2.0 11 1 I isoleucine 1.2 7 1 K lysine 4.6 26 2 L leucine 4.3 24 2 M methionine 1.4 8 1 N asparagine 5.0 28 1 P proline 7.7 43 2 Q glutamine 6.9 39 3 R arginine 2.0 11 1 S serine 14.6 82 3 T threonine 8.0 45 2 V valine 5.7 32 2 W tryptophan 0.4 2 1 Y tyrosine 1.2 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 HIV-1 Rev binding protein isoform 2 AGFG1 0.992 HIV-1 Rev binding protein isoform 3 AGFG1 0.977 HIV-1 Rev binding protein isoform 1 AGFG1 0.908 HIV-1 Rev binding protein isoform 4 AGFG2 0.246 ArfGAP with FG repeats 2 NUP214 0.047 nucleoporin 214kDa SMAP1 0.043 stromal membrane-associated GTPase-activating prote... SMAP1 0.042 stromal membrane-associated GTPase-activating protei... SMAP2 0.038 small ArfGAP2 ADAP1 0.037 centaurin, alpha 1 ARFGAP1 0.036 ADP-ribosylation factor GTPase activating protein 1 i... ARFGAP1 0.035 ADP-ribosylation factor GTPase activating protein 1 ... MUC21 0.034 mucin 21 AGAP1 0.031 centaurin, gamma 2 isoform 2 AGAP1 0.031 centaurin, gamma 2 isoform 1 NUP153 0.029 nucleoporin 153kDa POM121C 0.028 POM121 membrane glycoprotein (rat)-like AGAP9 0.027 PREDICTED: ArfGAP with GTPase domain, ankyrin repea... AGAP10 0.027 PREDICTED: ArfGAP with GTPase domain, ankyrin repea... AGAP7 0.027 ArfGAP with GTPase domain, ankyrin repeat and PH do... AGAP3 0.027 centaurin, gamma 3 isoform a LOC100288540 0.027 PREDICTED: hypothetical protein XP_002342775 AGAP11 0.027 ankyrin repeat and GTPase domain Arf GTPase activat... AGAP6 0.027 centaurin, gamma-like family, member 3 AGAP4 0.027 ArfGAP with GTPase domain, ankyrin repeat and PH do... RBM14 0.026 RNA binding motif protein 14 ARFGAP3 0.026 ADP-ribosylation factor GTPase activating protein 3... MUC4 0.026 mucin 4 isoform a AMOT 0.026 angiomotin isoform 2 AMOT 0.026 angiomotin isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.