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Search of human proteins with 38570081
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
(483 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 951 0.0
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 944 0.0
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 939 0.0
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 775 0.0
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 769 0.0
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 769 0.0
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 769 0.0
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 375 e-104
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 365 e-101
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 360 2e-99
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 359 3e-99
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 357 2e-98
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 357 2e-98
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 302 4e-82
gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s... 129 6e-30
gi|38201714 ELAV-like 1 [Homo sapiens] 84 4e-16
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 81 2e-15
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 81 2e-15
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 81 2e-15
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 81 2e-15
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 81 2e-15
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 80 3e-15
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 79 1e-14
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 76 6e-14
gi|33620747 myelin expression factor 2 [Homo sapiens] 74 4e-13
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 72 1e-12
gi|13899354 RNA binding motif protein 4B [Homo sapiens] 72 1e-12
gi|93277070 RNA binding motif protein 45 [Homo sapiens] 70 3e-12
gi|6678271 TAR DNA binding protein [Homo sapiens] 68 2e-11
gi|4505255 musashi 1 [Homo sapiens] 67 3e-11
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 951 bits (2457), Expect = 0.0
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
Query: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSS 300
NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSS
Sbjct: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSS 300
Query: 301 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 360
SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY
Sbjct: 301 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 360
Query: 361 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 420
SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP
Sbjct: 361 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 420
Query: 421 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 480
FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS
Sbjct: 421 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 480
Query: 481 KPY 483
KPY
Sbjct: 481 KPY 483
>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
[Homo sapiens]
Length = 482
Score = 944 bits (2441), Expect = 0.0
Identities = 482/483 (99%), Positives = 482/483 (99%), Gaps = 1/483 (0%)
Query: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
Query: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSS 300
NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSS GSSPSS
Sbjct: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSS-GSSPSS 299
Query: 301 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 360
SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY
Sbjct: 300 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 359
Query: 361 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 420
SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP
Sbjct: 360 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 419
Query: 421 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 480
FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS
Sbjct: 420 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 479
Query: 481 KPY 483
KPY
Sbjct: 480 KPY 482
>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
[Homo sapiens]
Length = 486
Score = 939 bits (2426), Expect = 0.0
Identities = 482/487 (98%), Positives = 482/487 (98%), Gaps = 5/487 (1%)
Query: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLA----LLQQTAS 236
MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLA LLQQTAS
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTAS 240
Query: 237 SGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSAGS 296
SGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSS GS
Sbjct: 241 SGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSS-GS 299
Query: 297 SPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEAL 356
SPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEAL
Sbjct: 300 SPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEAL 359
Query: 357 TQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQ 416
TQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQ
Sbjct: 360 TQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQ 419
Query: 417 MFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 476
MFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS
Sbjct: 420 MFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 479
Query: 477 KNDSKPY 483
KNDSKPY
Sbjct: 480 KNDSKPY 486
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 775 bits (2002), Expect = 0.0
Identities = 393/487 (80%), Positives = 435/487 (89%), Gaps = 7/487 (1%)
Query: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 25 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 84
Query: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 85 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 144
Query: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 145 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 204
Query: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 205 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 263
Query: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTSS-AGSS 297
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS A S+
Sbjct: 264 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 323
Query: 298 PSSSSSNSVNPIASLGALQTLAGATAGL-NVGSLAGMAALNGGLGSSGLSNGTGSTMEAL 356
P+S++ ++N + SLG LQ LAGAT GL N+ +LAGMAALNGGLG++GL+NGT TM+AL
Sbjct: 324 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDAL 383
Query: 357 TQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQ 416
TQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFGDQD+LQ
Sbjct: 384 TQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFGDQDILQ 441
Query: 417 MFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 476
MFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLKVQLKRS
Sbjct: 442 MFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRS 501
Query: 477 KNDSKPY 483
KNDSKPY
Sbjct: 502 KNDSKPY 508
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 770 bits (1987), Expect = 0.0
Identities = 391/491 (79%), Positives = 433/491 (88%), Gaps = 11/491 (2%)
Query: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
Query: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
Query: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 239
Query: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTSS-AGSS 297
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS A S+
Sbjct: 240 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 299
Query: 298 PSSSSSNSVNPIASLGALQTLAGATAGLN-----VGSLAGMAALNGGLGSSGLSNGTGST 352
P+S++ ++N + SLG LQ LAGAT GLN G++ MAALNGGLG++GL+NGT T
Sbjct: 300 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGT 359
Query: 353 MEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQ 412
M+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFGDQ
Sbjct: 360 MDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFGDQ 417
Query: 413 DLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 472
D+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLKVQ
Sbjct: 418 DILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQ 477
Query: 473 LKRSKNDSKPY 483
LKRSKNDSKPY
Sbjct: 478 LKRSKNDSKPY 488
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 769 bits (1986), Expect = 0.0
Identities = 392/493 (79%), Positives = 433/493 (87%), Gaps = 13/493 (2%)
Query: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
Query: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
Query: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 239
Query: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTSS-AGSS 297
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS A S+
Sbjct: 240 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 299
Query: 298 PSSSSSNSVNPIASLGALQTLAGATAGLN-------VGSLAGMAALNGGLGSSGLSNGTG 350
P+S++ ++N + SLG LQ LAGAT GLN L+GMAALNGGLG++GL+NGT
Sbjct: 300 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTA 359
Query: 351 STMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFG 410
TM+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFG
Sbjct: 360 GTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFG 417
Query: 411 DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 470
DQD+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLK
Sbjct: 418 DQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK 477
Query: 471 VQLKRSKNDSKPY 483
VQLKRSKNDSKPY
Sbjct: 478 VQLKRSKNDSKPY 490
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 769 bits (1986), Expect = 0.0
Identities = 392/493 (79%), Positives = 433/493 (87%), Gaps = 13/493 (2%)
Query: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 32 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 91
Query: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 92 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 151
Query: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 152 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 211
Query: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 212 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 270
Query: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTSS-AGSS 297
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS A S+
Sbjct: 271 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 330
Query: 298 PSSSSSNSVNPIASLGALQTLAGATAGLN-------VGSLAGMAALNGGLGSSGLSNGTG 350
P+S++ ++N + SLG LQ LAGAT GLN L+GMAALNGGLG++GL+NGT
Sbjct: 331 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTA 390
Query: 351 STMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFG 410
TM+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFG
Sbjct: 391 GTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFG 448
Query: 411 DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 470
DQD+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLK
Sbjct: 449 DQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK 508
Query: 471 VQLKRSKNDSKPY 483
VQLKRSKNDSKPY
Sbjct: 509 VQLKRSKNDSKPY 521
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 375 bits (964), Expect = e-104
Identities = 216/492 (43%), Positives = 300/492 (60%), Gaps = 53/492 (10%)
Query: 14 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 73
DAIK+FVGQ+PR EKDL+ +FEQ+G ++E+ V++D+ KGC F+T+ R +AL
Sbjct: 5 DAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDSAL 62
Query: 74 EAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133
+AQ+ALH K LPGM+ PIQ+KPADSE EDRKLF+GM+ K+ T+ D+R MF FG
Sbjct: 63 KAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPFGT 120
Query: 134 IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKE 193
I+EC +LRGPDG S+GCAFV F T A AQ AI +H ++T+ G SS +VVKFADT+K++
Sbjct: 121 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 180
Query: 194 QKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLN 253
+RM QQ+ Q+ S ++ T AL+QQ A+ ++ + L PM +
Sbjct: 181 LRRM-QQVATQLGMFSPIALQFGAYSAYTQ-----ALMQQQAALVAAHS-AYLSPMATMA 233
Query: 254 AMQLQNLAALAA-AASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASL 312
A+Q+Q++AA+ A A TPS + +S+P ++ + + P++ N +P+ +
Sbjct: 234 AVQMQHMAAINANGLIATPITPS-----SGTSTPPAIAATPVSAIPAALGVNGYSPVPTQ 288
Query: 313 GALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALP 372
Q A V + + ++ L QAY+G+Q Y AA P
Sbjct: 289 PTGQPAPDALYPNGVHPYPAQSP--------------AAPVDPLQQAYAGMQHYTAA-YP 333
Query: 373 TLYN---------------------QNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGD 411
Y+ Q QQ Q+EGP+G N+FIYHLPQEF D
Sbjct: 334 AAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTD 393
Query: 412 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 471
++LQMF+PFG+V+SAKVF+D+ TN SKCFGFVS+DNP SAQAAIQ+MNGFQIGMKRLKV
Sbjct: 394 SEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 453
Query: 472 QLKRSKNDSKPY 483
QLKR K+ ++PY
Sbjct: 454 QLKRPKDANRPY 465
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 395 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY---DNPVS 451
P+ LF+ +P+ ++DL +F FG + V DK T L K F++Y D+ +
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 452 AQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 481
AQ+A+ GM R +Q+K + ++S+
Sbjct: 64 AQSALHEQKTLP-GMNR-PIQVKPADSESR 91
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 365 bits (938), Expect = e-101
Identities = 227/497 (45%), Positives = 289/497 (58%), Gaps = 58/497 (11%)
Query: 1 MNGTLDHPDQP--DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQS 58
M+G P P D DAIK+FVGQ+PR E+DL+ LFE++G +YE+ VL+DR
Sbjct: 29 MSGLNPGPAVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTG--LH 86
Query: 59 KGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKK 118
KGC F+T+ R +AL+AQ+ALH K LPGM+ PIQ+KPA SE EDRKLF+GM+ K+
Sbjct: 87 KGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRG--EDRKLFVGMLGKQ 144
Query: 119 CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS 178
E D+R +F FG IEEC +LR PDG S+GCAFV F ++ AQ AI+ +H ++TM G S
Sbjct: 145 QGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGAS 204
Query: 179 SPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAG-LNTLGPQYLALLQQTASS 237
S +VVK ADT +++ +RM Q +AG L P L L +
Sbjct: 205 SSLVVKLADTDRERALRRMQQ-----------------MAGHLGAFHPAPLPL----GAC 243
Query: 238 GNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSAGSS 297
G T H L A Q L +AA A+ Q+ A + ++PL L ++A +S
Sbjct: 244 GAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVA----AFSLVAAPL--LPAAAANS 297
Query: 298 PSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAA-LNGGLGSSGLSNGTGSTMEA- 355
P S TL G A + V + NG GS L N S A
Sbjct: 298 PPGSGPG------------TLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQ 345
Query: 356 -------LTQAYSGIQQYAAAALPTLYN--QNLLTQQSIGAAGSQKEGPEGANLFIYHLP 406
L QAY+G+ YAAA P+ Y QQ Q+EGPEG NLFIYHLP
Sbjct: 346 SPGVADPLQQAYAGMHHYAAA-YPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLP 404
Query: 407 QEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 466
QEFGD +L+Q F+PFG VVSAKVF+D+ TN SKCFGFVS+DNP SAQ AIQ+MNGFQIGM
Sbjct: 405 QEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGM 464
Query: 467 KRLKVQLKRSKNDSKPY 483
KRLKVQLKR K+ ++PY
Sbjct: 465 KRLKVQLKRPKDANRPY 481
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 360 bits (923), Expect = 2e-99
Identities = 221/502 (44%), Positives = 288/502 (57%), Gaps = 68/502 (13%)
Query: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
Query: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAV--------E 106
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE +
Sbjct: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQ 150
Query: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 166
DRKLF+GM++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI
Sbjct: 151 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 210
Query: 167 AMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV-WGNLAGLNTLGP 225
A+H +QTM G SS +VVKFADT K++ +RM QQ+ QM + ++ +G
Sbjct: 211 ALHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIPFGAYGAYAQAMQ 269
Query: 226 QYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTTSS 284
Q AL+ A G LN PM A Q+Q +AAL +AA TP
Sbjct: 270 QQAALMASVAQGGYLN------PMAAFAAAQMQQMAALNMNGLAAAPMTP---------- 313
Query: 285 SPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSG 344
+S GS+P ++ +V I S + G N G A A G+
Sbjct: 314 -------TSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPYP 365
Query: 345 LSNGTGSTMEALTQAYSGIQQYAA-AALPTLYNQ--NLLTQQSIGAAGSQKEGPEGANLF 401
+ T + + L QAY+G+QQYA AA P Y Q Q Q+EGPEG NLF
Sbjct: 366 AQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLF 423
Query: 402 IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 461
IYHLPQEFGD +L+QMF+P FGFVS+DNP SAQ AIQ+MNG
Sbjct: 424 IYHLPQEFGDAELMQMFLP--------------------FGFVSFDNPASAQTAIQAMNG 463
Query: 462 FQIGMKRLKVQLKRSKNDSKPY 483
FQIGMKRLKVQLKR K+ ++PY
Sbjct: 464 FQIGMKRLKVQLKRPKDANRPY 485
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 359 bits (922), Expect = 3e-99
Identities = 222/503 (44%), Positives = 288/503 (57%), Gaps = 69/503 (13%)
Query: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
Query: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAV--------E 106
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE +
Sbjct: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQ 150
Query: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 166
DRKLF+GM++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI
Sbjct: 151 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 210
Query: 167 AMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAG--LNTLG 224
A+H +QTM G SS +VVKFADT K++ +RM QQ+ QM + ++ G L
Sbjct: 211 ALHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIPFGAYGAYAQALM 269
Query: 225 PQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTTS 283
Q AL+ A G LN PM A Q+Q +AAL +AA TP
Sbjct: 270 QQQAALMASVAQGGYLN------PMAAFAAAQMQQMAALNMNGLAAAPMTP--------- 314
Query: 284 SSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSS 343
+S GS+P ++ +V I S + G N G A A G+
Sbjct: 315 --------TSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPY 365
Query: 344 GLSNGTGSTMEALTQAYSGIQQYAA-AALPTLYNQ--NLLTQQSIGAAGSQKEGPEGANL 400
+ T + + L QAY+G+QQYA AA P Y Q Q Q+EGPEG NL
Sbjct: 366 PAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNL 423
Query: 401 FIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 460
FIYHLPQEFGD +L+QMF+P FGFVS+DNP SAQ AIQ+MN
Sbjct: 424 FIYHLPQEFGDAELMQMFLP--------------------FGFVSFDNPASAQTAIQAMN 463
Query: 461 GFQIGMKRLKVQLKRSKNDSKPY 483
GFQIGMKRLKVQLKR K+ ++PY
Sbjct: 464 GFQIGMKRLKVQLKRPKDANRPY 486
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 357 bits (915), Expect = 2e-98
Identities = 220/501 (43%), Positives = 286/501 (57%), Gaps = 67/501 (13%)
Query: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
Query: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVE-------D 107
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE
Sbjct: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSH 150
Query: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 167
RKLF+GM++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI A
Sbjct: 151 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINA 210
Query: 168 MHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV-WGNLAGLNTLGPQ 226
+H +QTM G SS +VVKFADT K++ +RM QQ+ QM + ++ +G Q
Sbjct: 211 LHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIPFGAYGAYAQAMQQ 269
Query: 227 YLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTTSSS 285
AL+ A G LN PM A Q+Q +AAL +AA TP
Sbjct: 270 QAALMASVAQGGYLN------PMAAFAAAQMQQMAALNMNGLAAAPMTP----------- 312
Query: 286 PLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGL 345
+S GS+P ++ +V I S + G N G A A G+
Sbjct: 313 ------TSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPYPA 365
Query: 346 SNGTGSTMEALTQAYSGIQQYAA-AALPTLYNQ--NLLTQQSIGAAGSQKEGPEGANLFI 402
+ T + + L QAY+G+QQYA AA P Y Q Q Q+EGPEG NLFI
Sbjct: 366 QSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFI 423
Query: 403 YHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF 462
YHLPQEFGD +L+QMF+P FGFVS+DNP SAQ AIQ+MNGF
Sbjct: 424 YHLPQEFGDAELMQMFLP--------------------FGFVSFDNPASAQTAIQAMNGF 463
Query: 463 QIGMKRLKVQLKRSKNDSKPY 483
QIGMKRLKVQLKR K+ ++PY
Sbjct: 464 QIGMKRLKVQLKRPKDANRPY 484
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 357 bits (915), Expect = 2e-98
Identities = 215/489 (43%), Positives = 285/489 (58%), Gaps = 61/489 (12%)
Query: 12 DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKA 71
DLDAIK+FVGQ+PR EKDL+ LFEQ+G +YE+ VL+D KGC F+T+ R +
Sbjct: 41 DLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTG--MHKGCAFLTYCARDS 98
Query: 72 ALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSF 131
A++AQ ALH K LPGM PIQ+KPADSE DRKLF+GM++K+ +E D+ +F F
Sbjct: 99 AIKAQTALHEQKTLPGMARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPF 157
Query: 132 GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
G I+EC +LRGPDG S+GCAFV F++ AQ AI A+H +QTM G SS +VVKFADT K+
Sbjct: 158 GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 217
Query: 192 KEQKRMAQQLQQQMQQISAASVWGNL------AGLNTLGPQYLALLQQTASSGNLNTLSS 245
+ +RM QQ + Q+ + L A L Q +L + S + S
Sbjct: 218 RTLRRM----QQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFS 273
Query: 246 LHPMGGLNAMQLQNLAALAAAASAAQNTPS--GTNALTTSSSPLSVLTSSAGSSPSSSSS 303
+ + A+ L L A A ++ ++P GT A+ +P++ AG P
Sbjct: 274 PCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPIT--NGFAGVVPFPGGH 331
Query: 304 NSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGI 363
++ + + G + A + + E L A+SG+
Sbjct: 332 PALETVYANGLVPYPAQSP----------------------------TVAETLHPAFSGV 363
Query: 364 QQY-----AAAALPTLYN----QNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDL 414
QQY AA P ++ LL QQ Q+EGPEG NLFIYHLPQEFGD +L
Sbjct: 364 QQYTAMYPTAAITPIAHSVPQPPPLLQQQ-------QREGPEGCNLFIYHLPQEFGDTEL 416
Query: 415 LQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 474
QMF+PFGN++S+KVF+D+ TN SKCFGFVS+DNP SAQAAIQ+MNGFQIGMKRLKVQLK
Sbjct: 417 TQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 476
Query: 475 RSKNDSKPY 483
R K+ PY
Sbjct: 477 RPKDPGHPY 485
Score = 41.6 bits (96), Expect = 0.002
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 385 IGAAGSQKEG--PEGAN------LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN 436
+G++G + G P+G LF+ +P+ ++DL +F FG + V D T
Sbjct: 24 VGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTG 83
Query: 437 LSKCFGFVSY---DNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 481
+ K F++Y D+ + AQ A+ GM R +Q+K + ++S+
Sbjct: 84 MHKGCAFLTYCARDSAIKAQTALHEQKTLP-GMAR-PIQVKPADSESR 129
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 302 bits (774), Expect = 4e-82
Identities = 202/493 (40%), Positives = 266/493 (53%), Gaps = 87/493 (17%)
Query: 1 MNGTLDHPDQP------DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN 54
MNG P P D DAIK+F+GQ+PR EKDL+ LFE++G +YE+ VL+DR
Sbjct: 33 MNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG 92
Query: 55 PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGM 114
KGC F+T+ R++AL+AQ+ALH K LPGM+ PIQ+KPADSE EDRKLF+GM
Sbjct: 93 --MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGM 148
Query: 115 ISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 174
++K+ +E+D+R +F +FG IEEC ILRGPDG S+GCAFV +++ A AQ AI A+H +QTM
Sbjct: 149 LNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTM 208
Query: 175 EGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAG--LNTLGPQYLALLQ 232
G SS +VVKFADT K++ +RM QQ+ QM + ++ G L Q AL+
Sbjct: 209 PGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMA 267
Query: 233 QTASSGNLNTLSSLHPMGGLNAMQLQNLAAL-AAAASAAQNTPSGTNALTTSSSPLSVLT 291
A G LN PM A Q+Q +AAL +AA TP
Sbjct: 268 SVAQGGYLN------PMAAFAAAQMQQMAALNMNGLAAAPMTP----------------- 304
Query: 292 SSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGS 351
+S GS+P ++ +V I S + G N G A A G+ + T +
Sbjct: 305 TSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQAN-GQPAAEAVFANGIHPYPAQSPTAA 363
Query: 352 TMEALTQAYSGIQQYAA-AALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFG 410
+ L QAY+G+QQYA AA P Y Q I A Q +PQ+
Sbjct: 364 --DPLQQAYAGVQQYAGPAAYPAAYGQ-------ISQAFPQPPP---------MIPQQQR 405
Query: 411 DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 470
+ GFVS+DNP SAQ AIQ+MNGFQIGMKRLK
Sbjct: 406 E------------------------------GFVSFDNPASAQTAIQAMNGFQIGMKRLK 435
Query: 471 VQLKRSKNDSKPY 483
VQLKR K+ ++PY
Sbjct: 436 VQLKRPKDANRPY 448
>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
Length = 320
Score = 129 bits (324), Expect = 6e-30
Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147
M PIQ+KPADSE DRKLF+GM++K+ +E D+ +F FG I+EC +LRGPDG S
Sbjct: 1 MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
Query: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQ 203
+GCAFV F++ AQ AI A+H +QTM G SS +VVKFADT K++ +RM Q + Q
Sbjct: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
Score = 62.0 bits (149), Expect = 1e-09
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
K+FVG + + SE+D+ LF+ +G + E VLR + SKGC FV F + A A
Sbjct: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
Query: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115
+ALH + +PG + +K AD++K + + +G +
Sbjct: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
Score = 42.4 bits (98), Expect = 0.001
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 388 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 447
A S+ G LF+ L ++ ++D+L++F PFG V+ + SK FV +
Sbjct: 10 ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68
Query: 448 NPVSAQAAIQSMNGFQ 463
+ AQAAI +++G Q
Sbjct: 69 SHTEAQAAIHALHGSQ 84
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 83.6 bits (205), Expect = 4e-16
Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 11/204 (5%)
Query: 2 NGTLDHPDQP---DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQS 58
NG DH + D+ + V +P+ ++ +LR LF G V ++RD+ S
Sbjct: 3 NGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG--HS 60
Query: 59 KGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKK 118
G FV + T K A A N L+ +++ +P+ + ++D L+I + +
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS----SEVIKDANLYISGLPRT 116
Query: 119 CTENDIRVMFSSFGQIEECRIL-RGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC 177
T+ D+ MFS FG+I R+L GLSRG AF+ F R+ A+ AI + + G
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN-GHKPPGS 175
Query: 178 SSPMVVKFADTQKDKEQKRMAQQL 201
S P+ VKFA + + QL
Sbjct: 176 SEPITVKFAANPNQNKNVALLSQL 199
Score = 65.9 bits (159), Expect = 8e-11
Identities = 36/79 (45%), Positives = 49/79 (62%)
Query: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459
+FIY+L Q+ + L QMF PFG V + KV D TN K FGFV+ N A AI S+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 460 NGFQIGMKRLKVQLKRSKN 478
NG+++G K L+V K +K+
Sbjct: 306 NGYRLGDKILQVSFKTNKS 324
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 399 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 458
NL + +LPQ +L +F G V SAK+ DK S +GFV+Y A+ AI +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 459 MNGFQIGMKRLKVQLKRSKND 479
+NG ++ K +KV R ++
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 367 AAAALPTLYNQNLLTQQ-SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV 425
A A+ TL L ++ + A E + ANL+I LP+ +D+ MF FG ++
Sbjct: 74 AERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRII 133
Query: 426 SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 461
+++V +D+ T LS+ F+ +D A+ AI S NG
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 80.9 bits (198), Expect = 2e-15
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+ V +P+ ++++ R LF G + ++RD+ QS G FV + K A +A N
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAIN 105
Query: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
L+ +++ +P+ + ++ D L++ + K T+ ++ +FS +G+I
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 138 RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKR 196
RIL G+SRG F+ F R A+ AIK ++ Q G + P+ VKFA+ K +
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQA 220
Query: 197 MAQQLQQ 203
+ QL Q
Sbjct: 221 LLSQLYQ 227
Score = 62.0 bits (149), Expect = 1e-09
Identities = 87/399 (21%), Positives = 150/399 (37%), Gaps = 71/399 (17%)
Query: 96 PADSEKNNAVEDRK--LFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAF 152
P+ + +D K L + + + T+ + R +F S G+IE C+++R G S G F
Sbjct: 32 PSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 91
Query: 153 VTFTTRAMAQTAIKAMH----QAQTME-GCSSPMVVKFADTQ-------KDKEQKRMAQQ 200
V + A+ AI ++ Q +T++ + P D K QK + Q
Sbjct: 92 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 151
Query: 201 LQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNL 260
Q + I++ + + G++ G ++ ++ + + L+ P G + ++
Sbjct: 152 FSQYGRIITSRILVDQVTGVSR-GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK-- 208
Query: 261 AALAAAASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAG 320
N PS ++ L S SP+ ++ A L L
Sbjct: 209 ---------FANNPSQKSS--------QALLSQLYQSPNRRYPGPLHHQAQRFRLDNL-- 249
Query: 321 ATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLL 380
LN G L +G +A P ++ +
Sbjct: 250 ---------------LNMAYGVKRLMSG----------------PVPPSACPPRFSP-IT 277
Query: 381 TQQSIGAAGSQKEGPEGANLFIY--HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLS 438
G G G I+ +L + + L Q+F PFG V + KV D TN
Sbjct: 278 IDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKC 337
Query: 439 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 477
K FGFV+ N A AI S+NG+++G + L+V K +K
Sbjct: 338 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 58.5 bits (140), Expect = 1e-08
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 372 PTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI 431
P+ N+N + GA + NL + +LPQ ++ +F G + S K+
Sbjct: 24 PSSNNRNCPSPMQTGATTDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR 79
Query: 432 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 480
DK T S +GFV+Y +P A+ AI ++NG ++ K +KV R + S
Sbjct: 80 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Score = 56.6 bits (135), Expect = 5e-08
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 367 AAAALPTLYNQNLLTQQ-SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV 425
A A+ TL L T+ + A ANL++ LP+ ++L Q+F +G ++
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 426 SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 481
++++ +D+ T +S+ GF+ +D + A+ AI+ +NG + + +K + N S+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQ 215
Score = 43.9 bits (102), Expect = 3e-04
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY 67
P + ++V +P+T ++K+L +LF QYG + +L D Q S+G F+ F
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD--QVTGVSRGVGFIRFD 181
Query: 68 TRKAALEAQNALHNMKVLPGMHHPIQMKPADS 99
R A EA L+ K G PI +K A++
Sbjct: 182 KRIEAEEAIKGLNGQKP-SGATEPITVKFANN 212
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 80.9 bits (198), Expect = 2e-15
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+ V +P+ ++++ R LF G + ++RD+ QS G FV + K A +A N
Sbjct: 51 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAIN 108
Query: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
L+ +++ +P+ + ++ D L++ + K T+ ++ +FS +G+I
Sbjct: 109 TLNGLRLQTKTIKVSYARPSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 164
Query: 138 RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKR 196
RIL G+SRG F+ F R A+ AIK ++ Q G + P+ VKFA+ K +
Sbjct: 165 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQA 223
Query: 197 MAQQLQQ 203
+ QL Q
Sbjct: 224 LLSQLYQ 230
Score = 60.1 bits (144), Expect = 4e-09
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459
+F+Y+L + + L Q+F PFG V + KV D TN K FGFV+ N A AI S+
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 460 NGFQIGMKRLKVQLKRSK 477
NG+++G + L+V K +K
Sbjct: 348 NGYRLGDRVLQVSFKTNK 365
Score = 58.5 bits (140), Expect = 1e-08
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 372 PTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI 431
P+ N+N + GA + NL + +LPQ ++ +F G + S K+
Sbjct: 27 PSSNNRNCPSPMQTGATTDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR 82
Query: 432 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 480
DK T S +GFV+Y +P A+ AI ++NG ++ K +KV R + S
Sbjct: 83 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 131
Score = 56.6 bits (135), Expect = 5e-08
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 367 AAAALPTLYNQNLLTQQ-SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV 425
A A+ TL L T+ + A ANL++ LP+ ++L Q+F +G ++
Sbjct: 103 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 162
Query: 426 SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 481
++++ +D+ T +S+ GF+ +D + A+ AI+ +NG + + +K + N S+
Sbjct: 163 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQ 218
Score = 43.9 bits (102), Expect = 3e-04
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY 67
P + ++V +P+T ++K+L +LF QYG + +L D Q S+G F+ F
Sbjct: 127 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD--QVTGVSRGVGFIRFD 184
Query: 68 TRKAALEAQNALHNMKVLPGMHHPIQMKPADS 99
R A EA L+ K G PI +K A++
Sbjct: 185 KRIEAEEAIKGLNGQKP-SGATEPITVKFANN 215
Score = 38.1 bits (87), Expect = 0.018
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 96 PADSEKNNAVEDRK--LFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAF 152
P+ + +D K L + + + T+ + R +F S G+IE C+++R G S G F
Sbjct: 35 PSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 94
Query: 153 VTFTTRAMAQTAIKAMH 169
V + A+ AI ++
Sbjct: 95 VNYIDPKDAEKAINTLN 111
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 80.9 bits (198), Expect = 2e-15
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+ V +P+ ++++ R LF G + ++RD+ QS G FV + K A +A N
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAIN 105
Query: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
L+ +++ +P+ + ++ D L++ + K T+ ++ +FS +G+I
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 138 RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKR 196
RIL G+SRG F+ F R A+ AIK ++ Q G + P+ VKFA+ K +
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQA 220
Query: 197 MAQQLQQ 203
+ QL Q
Sbjct: 221 LLSQLYQ 227
Score = 60.1 bits (144), Expect = 4e-09
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459
+F+Y+L + + L Q+F PFG V + KV D TN K FGFV+ N A AI S+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 460 NGFQIGMKRLKVQLKRSK 477
NG+++G + L+V K +K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 58.5 bits (140), Expect = 1e-08
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 372 PTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI 431
P+ N+N + GA + NL + +LPQ ++ +F G + S K+
Sbjct: 24 PSSNNRNCPSPMQTGATTDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR 79
Query: 432 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 480
DK T S +GFV+Y +P A+ AI ++NG ++ K +KV R + S
Sbjct: 80 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Score = 56.6 bits (135), Expect = 5e-08
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 367 AAAALPTLYNQNLLTQQ-SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV 425
A A+ TL L T+ + A ANL++ LP+ ++L Q+F +G ++
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 426 SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 481
++++ +D+ T +S+ GF+ +D + A+ AI+ +NG + + +K + N S+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQ 215
Score = 43.9 bits (102), Expect = 3e-04
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY 67
P + ++V +P+T ++K+L +LF QYG + +L D Q S+G F+ F
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD--QVTGVSRGVGFIRFD 181
Query: 68 TRKAALEAQNALHNMKVLPGMHHPIQMKPADS 99
R A EA L+ K G PI +K A++
Sbjct: 182 KRIEAEEAIKGLNGQKP-SGATEPITVKFANN 212
Score = 38.1 bits (87), Expect = 0.018
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 96 PADSEKNNAVEDRK--LFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAF 152
P+ + +D K L + + + T+ + R +F S G+IE C+++R G S G F
Sbjct: 32 PSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 91
Query: 153 VTFTTRAMAQTAIKAMH 169
V + A+ AI ++
Sbjct: 92 VNYIDPKDAEKAINTLN 108
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 80.9 bits (198), Expect = 2e-15
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+ V +P+ ++++ R LF G + ++RD+ QS G FV + K A +A N
Sbjct: 65 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAIN 122
Query: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
L+ +++ +P+ + ++ D L++ + K T+ ++ +FS +G+I
Sbjct: 123 TLNGLRLQTKTIKVSYARPSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 178
Query: 138 RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKR 196
RIL G+SRG F+ F R A+ AIK ++ Q G + P+ VKFA+ K +
Sbjct: 179 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQA 237
Query: 197 MAQQLQQ 203
+ QL Q
Sbjct: 238 LLSQLYQ 244
Score = 60.1 bits (144), Expect = 4e-09
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459
+F+Y+L + + L Q+F PFG V + KV D TN K FGFV+ N A AI S+
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 460 NGFQIGMKRLKVQLKRSK 477
NG+++G + L+V K +K
Sbjct: 362 NGYRLGDRVLQVSFKTNK 379
Score = 58.5 bits (140), Expect = 1e-08
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 372 PTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI 431
P+ N+N + GA + NL + +LPQ ++ +F G + S K+
Sbjct: 41 PSSNNRNCPSPMQTGATTDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR 96
Query: 432 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 480
DK T S +GFV+Y +P A+ AI ++NG ++ K +KV R + S
Sbjct: 97 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 145
Score = 56.6 bits (135), Expect = 5e-08
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 367 AAAALPTLYNQNLLTQQ-SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV 425
A A+ TL L T+ + A ANL++ LP+ ++L Q+F +G ++
Sbjct: 117 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 176
Query: 426 SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 481
++++ +D+ T +S+ GF+ +D + A+ AI+ +NG + + +K + N S+
Sbjct: 177 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQ 232
Score = 43.9 bits (102), Expect = 3e-04
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY 67
P + ++V +P+T ++K+L +LF QYG + +L D Q S+G F+ F
Sbjct: 141 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD--QVTGVSRGVGFIRFD 198
Query: 68 TRKAALEAQNALHNMKVLPGMHHPIQMKPADS 99
R A EA L+ K G PI +K A++
Sbjct: 199 KRIEAEEAIKGLNGQKP-SGATEPITVKFANN 229
Score = 38.1 bits (87), Expect = 0.018
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 96 PADSEKNNAVEDRK--LFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAF 152
P+ + +D K L + + + T+ + R +F S G+IE C+++R G S G F
Sbjct: 49 PSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 108
Query: 153 VTFTTRAMAQTAIKAMH 169
V + A+ AI ++
Sbjct: 109 VNYIDPKDAEKAINTLN 125
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 80.9 bits (198), Expect = 2e-15
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+ V +P+ ++++ R LF G + ++RD+ QS G FV + K A +A N
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAIN 105
Query: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
L+ +++ +P+ + ++ D L++ + K T+ ++ +FS +G+I
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 138 RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKR 196
RIL G+SRG F+ F R A+ AIK ++ Q G + P+ VKFA+ K +
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQA 220
Query: 197 MAQQLQQ 203
+ QL Q
Sbjct: 221 LLSQLYQ 227
Score = 60.1 bits (144), Expect = 4e-09
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459
+F+Y+L + + L Q+F PFG V + KV D TN K FGFV+ N A AI S+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 460 NGFQIGMKRLKVQLKRSK 477
NG+++G + L+V K +K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 58.5 bits (140), Expect = 1e-08
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 372 PTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI 431
P+ N+N + GA + NL + +LPQ ++ +F G + S K+
Sbjct: 24 PSSNNRNCPSPMQTGATTDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR 79
Query: 432 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 480
DK T S +GFV+Y +P A+ AI ++NG ++ K +KV R + S
Sbjct: 80 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Score = 56.6 bits (135), Expect = 5e-08
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 367 AAAALPTLYNQNLLTQQ-SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV 425
A A+ TL L T+ + A ANL++ LP+ ++L Q+F +G ++
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 426 SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 481
++++ +D+ T +S+ GF+ +D + A+ AI+ +NG + + +K + N S+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQ 215
Score = 43.9 bits (102), Expect = 3e-04
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY 67
P + ++V +P+T ++K+L +LF QYG + +L D Q S+G F+ F
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD--QVTGVSRGVGFIRFD 181
Query: 68 TRKAALEAQNALHNMKVLPGMHHPIQMKPADS 99
R A EA L+ K G PI +K A++
Sbjct: 182 KRIEAEEAIKGLNGQKP-SGATEPITVKFANN 212
Score = 38.1 bits (87), Expect = 0.018
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 96 PADSEKNNAVEDRK--LFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAF 152
P+ + +D K L + + + T+ + R +F S G+IE C+++R G S G F
Sbjct: 32 PSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 91
Query: 153 VTFTTRAMAQTAIKAMH 169
V + A+ AI ++
Sbjct: 92 VNYIDPKDAEKAINTLN 108
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 80.5 bits (197), Expect = 3e-15
Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 8/187 (4%)
Query: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+ V +P+ ++++L+ LF G + ++RD+ QS G FV + K A +A N
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAIN 98
Query: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
L+ +++ +P+ + ++ D L++ + K T+ ++ +FS +G+I
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 138 RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKR 196
RIL G+SRG F+ F R A+ AIK ++ Q G + P+ VKFA+ K +
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN-GQKPPGATEPITVKFANNPSQKTNQA 213
Query: 197 MAQQLQQ 203
+ QL Q
Sbjct: 214 ILSQLYQ 220
Score = 62.4 bits (150), Expect = 9e-10
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459
+F+Y+L + + L QMF PFG V + KV D TN K FGFV+ N A AI S+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 460 NGFQIGMKRLKVQLKRSK 477
NG+++G + L+V K +K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 60.5 bits (145), Expect = 3e-09
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 357 TQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQ 416
TQ +G A PT N N + G K NL + +LPQ ++L
Sbjct: 3 TQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSK-----TNLIVNYLPQNMTQEELKS 57
Query: 417 MFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 476
+F G + S K+ DK T S +GFV+Y +P A+ AI ++NG ++ K +KV R
Sbjct: 58 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 117
Query: 477 KNDS 480
+ S
Sbjct: 118 SSAS 121
Score = 56.2 bits (134), Expect = 6e-08
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 367 AAAALPTLYNQNLLTQQ-SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV 425
A A+ TL L T+ + A ANL++ LP+ ++L Q+F +G ++
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 426 SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 461
++++ +D+ T +S+ GF+ +D + A+ AI+ +NG
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 47.8 bits (112), Expect = 2e-05
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY 67
P + ++V +P+T ++K+L +LF QYG + +L D Q S+G F+ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD--QVTGISRGVGFIRFD 174
Query: 68 TRKAALEAQNALHNMKVLPGMHHPIQMKPAD--SEKNN 103
R A EA L+ K PG PI +K A+ S+K N
Sbjct: 175 KRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTN 211
Score = 37.4 bits (85), Expect = 0.031
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 96 PADSEKNNAVEDRK--LFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAF 152
P DS ED K L + + + T+ +++ +F S G+IE C+++R G S G F
Sbjct: 28 PVDSGNT---EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 153 VTFTTRAMAQTAIKAMH 169
V + A+ AI ++
Sbjct: 85 VNYIDPKDAEKAINTLN 101
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 78.6 bits (192), Expect = 1e-14
Identities = 93/393 (23%), Positives = 156/393 (39%), Gaps = 77/393 (19%)
Query: 102 NNAVEDRK--LFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTR 158
N A +D K L + + + T+++ + +F S G IE C+++R G S G FV ++
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 159 AMAQTAIKAMH----QAQTME-GCSSPMVVKFADTQ-------KDKEQKRMAQQLQQQMQ 206
A AI ++ Q +T++ + P D K QK M Q Q +
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 207 QISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAA 266
I++ + + G++ G ++ ++ + + L+ P+G + ++
Sbjct: 151 IITSRILVDQVTGVSR-GVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVK-------- 201
Query: 267 ASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLN 326
N PS T + L+ L S+ + + L G + L+
Sbjct: 202 ---FANNPSQK----TGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLS 254
Query: 327 VGSLAGMAALNG--GLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQS 384
+ + A++G GL GLS G
Sbjct: 255 LIARFSPIAIDGMSGLAGVGLSGG------------------------------------ 278
Query: 385 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 444
AAG+ G +F+Y+L E + L Q+F PFG V + KV D TN K FGFV
Sbjct: 279 --AAGA------GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
Query: 445 SYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 477
+ N A AI S+NG+++G + L+V K SK
Sbjct: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 70.5 bits (171), Expect = 3e-12
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 8/187 (4%)
Query: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+ V +P+ ++ + + LF G + ++RD+ QS G FV + A +A N
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG--QSLGYGFVNYSDPNDADKAIN 98
Query: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
L+ +K+ +P+ + ++ D L++ + K ++ ++ +FS +G+I
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSA----SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 138 RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKR 196
RIL G+SRG F+ F R A+ AIK ++ Q G + P+ VKFA+ K +
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPLGAAEPITVKFANNPSQKTGQA 213
Query: 197 MAQQLQQ 203
+ L Q
Sbjct: 214 LLTHLYQ 220
Score = 55.8 bits (133), Expect = 8e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 399 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 458
NL + +LPQ + +F G++ S K+ DK T S +GFV+Y +P A AI +
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 459 MNGFQIGMKRLKVQLKRSKNDS 480
+NG ++ K +KV R + S
Sbjct: 100 LNGLKLQTKTIKVSYARPSSAS 121
Score = 46.2 bits (108), Expect = 7e-05
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY 67
P + ++V +P+T S+K++ +LF QYG + +L D Q S+G F+ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD--QVTGVSRGVGFIRFD 174
Query: 68 TRKAALEAQNALHNMKVLPGMHHPIQMKPADS 99
R A EA L+ K L G PI +K A++
Sbjct: 175 KRIEAEEAIKGLNGQKPL-GAAEPITVKFANN 205
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 76.3 bits (186), Expect = 6e-14
Identities = 93/391 (23%), Positives = 156/391 (39%), Gaps = 80/391 (20%)
Query: 102 NNAVEDRK--LFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTR 158
N A +D K L + + + T+++ + +F S G IE C+++R G S G FV ++
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 159 AMAQTAIKAMH----QAQTME-GCSSPMVVKFADTQ-------KDKEQKRMAQQLQQQMQ 206
A AI ++ Q +T++ + P D K QK M Q Q +
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 207 QISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAA 266
I++ + + G++ G ++ ++ + + L+ P+G + ++
Sbjct: 151 IITSRILVDQVTGVSR-GVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVK-------- 201
Query: 267 ASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLN 326
N PS T + L+ L S+ + + L L +A +
Sbjct: 202 ---FANNPSQK----TGQALLTHLYQSSARRYAGPLHHQTQRFR-LDNLLNMAYGVKRFS 253
Query: 327 VGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIG 386
++ GM+ L G+G SG G
Sbjct: 254 PIAIDGMSGL-AGVGLSG-----------------------------------------G 271
Query: 387 AAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 446
AAG+ G +F+Y+L E + L Q+F PFG V + KV D TN K FGFV+
Sbjct: 272 AAGA------GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTM 325
Query: 447 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 477
N A AI S+NG+++G + L+V K SK
Sbjct: 326 TNYDEAAMAIASLNGYRLGERVLQVSFKTSK 356
Score = 70.5 bits (171), Expect = 3e-12
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 8/187 (4%)
Query: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+ V +P+ ++ + + LF G + ++RD+ QS G FV + A +A N
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG--QSLGYGFVNYSDPNDADKAIN 98
Query: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
L+ +K+ +P+ + ++ D L++ + K ++ ++ +FS +G+I
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSA----SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 138 RILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKR 196
RIL G+SRG F+ F R A+ AIK ++ Q G + P+ VKFA+ K +
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPLGAAEPITVKFANNPSQKTGQA 213
Query: 197 MAQQLQQ 203
+ L Q
Sbjct: 214 LLTHLYQ 220
Score = 55.8 bits (133), Expect = 8e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 399 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 458
NL + +LPQ + +F G++ S K+ DK T S +GFV+Y +P A AI +
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 459 MNGFQIGMKRLKVQLKRSKNDS 480
+NG ++ K +KV R + S
Sbjct: 100 LNGLKLQTKTIKVSYARPSSAS 121
Score = 46.2 bits (108), Expect = 7e-05
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY 67
P + ++V +P+T S+K++ +LF QYG + +L D Q S+G F+ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD--QVTGVSRGVGFIRFD 174
Query: 68 TRKAALEAQNALHNMKVLPGMHHPIQMKPADS 99
R A EA L+ K L G PI +K A++
Sbjct: 175 KRIEAEEAIKGLNGQKPL-GAAEPITVKFANN 205
>gi|33620747 myelin expression factor 2 [Homo sapiens]
Length = 600
Score = 73.6 bits (179), Expect = 4e-13
Identities = 90/387 (23%), Positives = 160/387 (41%), Gaps = 42/387 (10%)
Query: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
+F+ + K ++ +FS G ++ I DG SRG VTF A AI +M
Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI-SMF 293
Query: 170 QAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQM---------------QQISAASVW 214
Q + PM VK D E+ R Q+ Q ISA+ +
Sbjct: 294 NGQFL--FDRPMHVKMDDKSVPHEEYRSHDGKTPQLPRGLGGIGMGLGPGGQPISASQL- 350
Query: 215 GNLAG-LNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNT 273
N+ G + LGP + + G +N + GGL AM ++ +
Sbjct: 351 -NIGGVMGNLGPGGMGM--DGPGFGGMNRIGGGIGFGGLEAMN-----SMGGFGGVGRMG 402
Query: 274 PSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQT--LAGATAGLNVGSLA 331
A+T+S + G + + LG+ AG N+G +
Sbjct: 403 ELYRGAMTSS------MERDFGRGDIGINRGFGDSFGRLGSAMIGGFAGRIGSSNMGPVG 456
Query: 332 GMAALNGGLGS-SGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNL-LTQQSIGAAG 389
+ ++GG+GS + ++ G G ++ ++ ++ + A L + + +G+
Sbjct: 457 --SGISGGMGSMNSVTGGMGMGLDRMSSSFDRMGPGIGAILERSIDMDRGFLSGPMGSGM 514
Query: 390 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 449
++ G +G +F+ +LP + Q L + F G+V+ A+ I + SK G V +D+P
Sbjct: 515 RERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAE--IKMENGKSKGCGTVRFDSP 572
Query: 450 VSAQAAIQSMNGFQIGMKRLKVQLKRS 476
SA+ A + MNG +I + + V+L R+
Sbjct: 573 ESAEKACRIMNGIKISGREIDVRLDRN 599
Score = 30.8 bits (68), Expect = 2.9
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 53 QNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRK--- 109
Q P S V ++A E ++ L G + P +KN+ ++K
Sbjct: 41 QQPQHSSSSNGVKMENDESAKEEKSDLKEKST--GSKKANRFHPYSKDKNSGTGEKKGPN 98
Query: 110 ---LFIGMISKKCTENDIR-VMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 165
+FI I I+ +M G++ + + +G SRGC V F + A+
Sbjct: 99 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 158
Query: 166 KAMHQ 170
+ M++
Sbjct: 159 ETMNK 163
Score = 30.8 bits (68), Expect = 2.9
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 394 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQ 453
G G+ +F+ +L + G + L ++F G V A + DK S+ G V+++ + A
Sbjct: 229 GRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAV 287
Query: 454 AAIQSMNG 461
AI NG
Sbjct: 288 QAISMFNG 295
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 71.6 bits (174), Expect = 1e-12
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Query: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
+K+F+G +PR +E+++R LFEQYG V E +++++ FV + AA +A
Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51
Query: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
LH+ K+ H + + ++ KN + KL +G IS CT ++R F +G +
Sbjct: 52 IRNLHHYKL-----HGVNIN-VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105
Query: 136 ECRILR 141
EC I++
Sbjct: 106 ECDIVK 111
Score = 39.7 bits (91), Expect = 0.006
Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 10/82 (12%)
Query: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459
LFI +LP+E +Q++ +F +G V+ + ++ K +GFV ++ +A+ AI+++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55
Query: 460 NGFQIGMKRLKVQLKRSKNDSK 481
+ ++ + + + ++ SKN SK
Sbjct: 56 HHYK--LHGVNINVEASKNKSK 75
Score = 35.0 bits (79), Expect = 0.15
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
K+ VG + T + K+LR FE+YG V E ++++D + FV + A+EA
Sbjct: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA----------FVHMERAEDAVEAI 128
Query: 77 NALHN 81
L N
Sbjct: 129 RGLDN 133
>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
Length = 359
Score = 71.6 bits (174), Expect = 1e-12
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Query: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
+K+F+G +PR +E+++R LFEQYG V E +++++ FV + AA +A
Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 51
Query: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
LH+ K+ H + + ++ KN + KL +G IS CT ++R F +G +
Sbjct: 52 IRNLHHYKL-----HGVNIN-VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVI 105
Query: 136 ECRILR 141
EC I++
Sbjct: 106 ECDIVK 111
Score = 39.7 bits (91), Expect = 0.006
Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 10/82 (12%)
Query: 400 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 459
LFI +LP+E +Q++ +F +G V+ + ++ K +GFV ++ +A+ AI+++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVL--------ECDIIKNYGFVHIEDKTAAEDAIRNL 55
Query: 460 NGFQIGMKRLKVQLKRSKNDSK 481
+ ++ + + + ++ SKN SK
Sbjct: 56 HHYK--LHGVNINVEASKNKSK 75
Score = 33.5 bits (75), Expect = 0.44
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
K+ VG + T + ++LR FE+YG V E ++++D + FV + A+EA
Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA----------FVHMERAEDAVEAI 128
Query: 77 NALHN 81
L N
Sbjct: 129 RGLDN 133
Score = 30.0 bits (66), Expect = 4.9
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 384 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 443
+I S+ + L + ++ +Q+L F +G V+ + D + F
Sbjct: 64 NINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAF 115
Query: 444 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP 482
V + A AI+ ++ + KR+ VQL S+ + P
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 154
>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
Length = 474
Score = 70.5 bits (171), Expect = 3e-12
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 21/209 (10%)
Query: 5 LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 64
+D D+P I + + + E LRE F +G + +I V+RD+ + +SKG FV
Sbjct: 17 VDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK--HTKESKGIAFV 71
Query: 65 TFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNA---VEDRKL--FIGMISKKC 119
F A A +H + P PI++ A S + + VED +L MI K
Sbjct: 72 KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSY 131
Query: 120 TENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS 178
TE D+R F +G IE C I++ G S+G +V + +K AQ +E C
Sbjct: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKPSQAAQAIENCD 182
Query: 179 SPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207
A+ K+K + Q M+Q
Sbjct: 183 RSFRAILAE-PKNKASESSEQDYYSNMRQ 210
Score = 37.0 bits (84), Expect = 0.040
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 387 AAGSQK--EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 444
++GS + E E +F+ +P+ + ++DL + F +G++ + +K T SK G+V
Sbjct: 108 SSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYV 166
Query: 445 SYDNPVSAQAAIQS 458
Y P A AI++
Sbjct: 167 RYLKPSQAAQAIEN 180
Score = 34.7 bits (78), Expect = 0.20
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 414 LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MKRLK 470
L + F PFG++ V DK T SK FV + A A++ M+G +G K +K
Sbjct: 41 LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100
Query: 471 VQLKRSKN 478
V + +S++
Sbjct: 101 VFIAQSRS 108
Score = 33.9 bits (76), Expect = 0.34
Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 31/161 (19%)
Query: 340 LGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSI---GAAGSQ----- 391
+G S + +G+ +T A Q AA L ++ N QQ + G++GSQ
Sbjct: 315 IGVSFIDDGSNATDLLRKMA----TQMVAAQLASMVWNNPSQQQFMQFGGSSGSQLPQIQ 370
Query: 392 -------------KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLS 438
E P LFI P L +F FGN++ + K
Sbjct: 371 TDVVLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV--- 427
Query: 439 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 479
G+ Y + +SA AI +++G + RLKV L S +
Sbjct: 428 ---GYAKYADRISANDAIATLHGKILNGVRLKVMLADSPRE 465
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 67.8 bits (164), Expect = 2e-11
Identities = 75/343 (21%), Positives = 135/343 (39%), Gaps = 46/343 (13%)
Query: 23 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
+P +E+DL+E F +G V + V +D SKG FV F + ++ + H
Sbjct: 111 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG--HSKGFGFVRFTEYETQVKVMSQRH-- 166
Query: 83 KVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG 142
++ G ++ + ++ + RK+F+G ++ TE+++R FS +G + + I +
Sbjct: 167 -MIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP 225
Query: 143 PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQ 202
R AFVTF +AQ+ C +++K + + Q
Sbjct: 226 ----FRAFAFVTFADDQIAQSL------------CGEDLIIKGISVHISNAEPKHNSNRQ 269
Query: 203 QQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAA 262
+ + GN G G L + GG+N A
Sbjct: 270 LE----RSGRFGGNPGGFGNQG----GFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPA 321
Query: 263 LAAAASAAQNTPSGTNALTTSSSPLSVLTSSAG-SSPSSSSSNSVN----PIASLGALQT 317
+ AAA A AL +S + +L S S PS ++ N N P + G+
Sbjct: 322 MMAAAQA---------ALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGN- 371
Query: 318 LAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 360
+ +G N G+ G + + SG + G GS+M++ + +
Sbjct: 372 --NSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGW 412
Score = 37.0 bits (84), Expect = 0.040
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 398 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 446
++L + LP + +QDL + F FG V+ +V D +T SK FGFV +
Sbjct: 104 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF 152
Score = 35.0 bits (79), Expect = 0.15
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 9 DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
D+P L + K+FVG+ +E +LRE F QYG V ++ + P + FVTF
Sbjct: 185 DEP-LRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-------PKPFRAFAFVTF 234
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 67.4 bits (163), Expect = 3e-11
Identities = 90/368 (24%), Positives = 152/368 (41%), Gaps = 64/368 (17%)
Query: 5 LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 64
L PD P D KMF+G + +++ LRE F Q+G V E V+RD +S+G FV
Sbjct: 10 LASPDSPH-DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK--RSRGFGFV 66
Query: 65 TFYTR----KAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
TF + K ++++ L + + P + P + +P +K+F+G +S T
Sbjct: 67 TFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQP-----KMVTRTKKIFVGGLSVNTT 121
Query: 121 ENDIRVMFSSFGQIEECRIL-RGPDGLSRGCAFVTFTTRAMAQTAIKA-MHQAQTMEGCS 178
D++ F FG++++ ++ RG FVTF + + + + H+
Sbjct: 122 VEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN----- 176
Query: 179 SPMVVKFADTQKDKEQKRMAQQ-LQQQMQQISAASVWGNLAGLNTLG-PQYLALLQQTAS 236
K + +K + ++ M+ + ++ + + G+ LG P + A + S
Sbjct: 177 -----KMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRS 231
Query: 237 SGNL---------------NTLSSLHPMGGLNAMQLQNLAALAAAASAAQ---------- 271
L L S + L A+ L +AAAA+AA
Sbjct: 232 YTGLAPGYTYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPW 291
Query: 272 -------NTPSGTNAL--TTSSSPLSVLTSSAG-SSPSSSSSNSVNPIASLGALQTLAG- 320
+TPS T TTS P++ L +A S SS ++ +P S G +L G
Sbjct: 292 TMAPPPGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGP 351
Query: 321 --ATAGLN 326
ATA N
Sbjct: 352 LIATAFTN 359
Score = 34.3 bits (77), Expect = 0.26
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 412 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 448
+D+ Q F FG V A + DK TN + FGFV++++
Sbjct: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.127 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,561,550
Number of Sequences: 37866
Number of extensions: 676169
Number of successful extensions: 6701
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 4541
Number of HSP's gapped (non-prelim): 1806
length of query: 483
length of database: 18,247,518
effective HSP length: 106
effective length of query: 377
effective length of database: 14,233,722
effective search space: 5366113194
effective search space used: 5366113194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.