Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C13orf34 Sequence: fasta or formatted (559aa) NCBI GI: 38505207
Description:

aurora borealis

Referenced in:

Centrosome

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         26           2
 C cysteine            2.3         13           1
 D aspartate           6.4         36           1
 E glutamate           6.6         37           2
 F phenylalanine       3.6         20           2
 G glycine             4.8         27           2
 H histidine           2.3         13           1
 I isoleucine          6.3         35           1
 K lysine              5.0         28           2
 L leucine             5.9         33           2
 M methionine          2.7         15           1
 N asparagine          4.5         25           2
 P proline             7.5         42           1
 Q glutamine           5.4         30           1
 R arginine            2.9         16           2
 S serine             15.2         85           4
 T threonine           6.6         37           2
 V valine              4.7         26           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aurora borealis 
MUC17                 0.015   mucin 17 
MAGEC1                0.011   melanoma antigen family C, 1 
NR3C2                 0.010   nuclear receptor subfamily 3, group C, member 2 [Ho...
DKFZP564O0823         0.010   DKFZP564O0823 protein 
DTL                   0.009   denticleless homolog 
MUC12                 0.009   PREDICTED: mucin 12 
LOC100133714          0.009   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.009   PREDICTED: mucin 12, cell surface associated 
MUC4                  0.009   mucin 4 isoform a 
BPTF                  0.009   bromodomain PHD finger transcription factor isoform ...
KIAA1430              0.009   hypothetical protein LOC57587 
POLR2A                0.008   DNA-directed RNA polymerase II A 
NACA                  0.008   nascent polypeptide-associated complex alpha subuni...
KIAA1967              0.008   p30 DBC protein 
KIAA1967              0.008   p30 DBC protein 
MUC12                 0.007   PREDICTED: mucin 12 
MLL2                  0.007   myeloid/lymphoid or mixed-lineage leukemia 2 
PKNOX1                0.007   PBX/knotted 1 homeobox 1 
FLJ32810              0.007   Rho-type GTPase-activating protein FLJ32810 
ADD1                  0.007   adducin 1 (alpha) isoform d 
ADD1                  0.007   adducin 1 (alpha) isoform c 
ADD1                  0.007   adducin 1 (alpha) isoform b 
ADD1                  0.007   adducin 1 (alpha) isoform a 
ANKS6                 0.007   ankyrin repeat and sterile alpha motif domain contai...
FAM186A               0.006   family with sequence similarity 186, member A [Homo...
MUC16                 0.006   mucin 16 
MUC5AC                0.006   mucin 5AC 
AKAP13                0.006   A-kinase anchor protein 13 isoform 1 
AKAP13                0.006   A-kinase anchor protein 13 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press