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Search of human proteins with 38348322
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38348322 family with sequence similarity 174, member A [Homo
sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38348322 family with sequence similarity 174, member A [Homo ... 388 e-108
gi|150170694 hypothetical protein LOC400451 [Homo sapiens] 70 1e-12
gi|13994190 frizzled 8 [Homo sapiens] 43 2e-04
gi|82546824 forkhead box K1 [Homo sapiens] 41 7e-04
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 40 0.001
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 40 0.001
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 40 0.001
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 40 0.001
gi|23510368 homeobox D11 [Homo sapiens] 40 0.001
gi|39812378 RAN binding protein 9 [Homo sapiens] 40 0.001
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 40 0.001
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.002
gi|54873613 agrin [Homo sapiens] 40 0.002
gi|50428940 mediator complex subunit 25 [Homo sapiens] 40 0.002
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 40 0.002
gi|154816198 transcription elongation factor B polypeptide 3C-li... 40 0.002
gi|156938279 transcription elongation factor B polypeptide 3C [H... 40 0.002
gi|51479192 ring finger protein 1 [Homo sapiens] 39 0.002
gi|189339239 hypothetical protein LOC55009 [Homo sapiens] 39 0.002
gi|122937424 one cut homeobox 3 [Homo sapiens] 39 0.002
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 39 0.003
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 39 0.003
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 39 0.003
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap... 39 0.004
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 39 0.004
gi|31657109 zinc finger protein 282 [Homo sapiens] 39 0.004
gi|23510333 pygopus homolog 2 [Homo sapiens] 39 0.004
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 38 0.005
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 38 0.005
gi|118498339 EMI domain containing 2 [Homo sapiens] 38 0.005
>gi|38348322 family with sequence similarity 174, member A [Homo
sapiens]
Length = 190
Score = 388 bits (997), Expect = e-108
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MKASQCCCCLSHLLASVLLLLLLPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGP 60
MKASQCCCCLSHLLASVLLLLLLPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGP
Sbjct: 1 MKASQCCCCLSHLLASVLLLLLLPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGP 60
Query: 61 TPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPGDKPM 120
TPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPGDKPM
Sbjct: 61 TPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPGDKPM 120
Query: 121 TQRALTVLMVVSGAVLVYFVVRTVRMRRRNRKTRRYGVLDTNIENMELTPLEQDDEDDDN 180
TQRALTVLMVVSGAVLVYFVVRTVRMRRRNRKTRRYGVLDTNIENMELTPLEQDDEDDDN
Sbjct: 121 TQRALTVLMVVSGAVLVYFVVRTVRMRRRNRKTRRYGVLDTNIENMELTPLEQDDEDDDN 180
Query: 181 TLFDANHPRR 190
TLFDANHPRR
Sbjct: 181 TLFDANHPRR 190
>gi|150170694 hypothetical protein LOC400451 [Homo sapiens]
Length = 159
Score = 70.1 bits (170), Expect = 1e-12
Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 24/176 (13%)
Query: 13 LLASVLLLLLLPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAE 72
L A +L LLLL L+ P A A A + P P P PPGP P G +
Sbjct: 6 LPAPLLPLLLLALLAAPAA----RASRAESVSAPWPEPERESRPPPGPGPGNTTRFG-SG 60
Query: 73 AAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPGDKPMTQRALTVLMVVS 132
AAG GS N S G+ V +S D P + A+ V +
Sbjct: 61 AAGGSGSSSSNSS---------------GDALV---TRISILLRDLPTLKAAVIVAFAFT 102
Query: 133 GAVLVYFVVRTVRMRRRNRKTRRYGVLDTNIENMELTPL-EQDDEDDDNTLFDANH 187
++ ++R R +R +KTR+Y ++ T E +E+ PL E+DDED+D+T+FD +
Sbjct: 103 TLLIACLLLRVFRSGKRLKKTRKYDIITTPAERVEMAPLNEEDDEDEDSTVFDIKY 158
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 42.7 bits (99), Expect = 2e-04
Identities = 31/97 (31%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 23 LPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGG 82
LPE P + + P P PR LPP PPG P G G A P GG
Sbjct: 138 LPEQGNPDTLCMDYNRTDLTTAAPSP-PRRLPPPPPGEQPPSGSGHGRPPGARPPHRGGG 196
Query: 83 NGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPGDKP 119
G D G GGG A P G P
Sbjct: 197 RGGG------GGDAAAPPARGGGGGGKARPPGGGAAP 227
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 40.8 bits (94), Expect = 7e-04
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 19 LLLLLPELSGPLAVLLQAAEAAPGLGPPD-PRPRTLPPLPPGPTPAQQPGRGLAEAAGPR 77
LL L P+ AA A P PP P PP PP P P P +A A
Sbjct: 13 LLALRSAPCSPVLCAAAAAAAFPAAAPPPAPAQPQPPPGPPPPPPPPLPPGAIAGAGSSG 72
Query: 78 GSEGGNGSNPVAG 90
GS G +G + VAG
Sbjct: 73 GSSGVSGDSAVAG 85
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/129 (35%), Positives = 54/129 (41%), Gaps = 30/129 (23%)
Query: 13 LLASVLLLLLLP---------ELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPG---- 59
LL+ L L LLP E S PLA LLQ+ + + P P LPP P
Sbjct: 768 LLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSLQ----IPPEQPEAPCLPPESPASALE 823
Query: 60 PTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGL-----AVSPN 114
P PA+ P L+ A P GS PV L T GK G GGGL P
Sbjct: 824 PEPARPP---LSALAPPHGSP----DPPVPELLTGRGSGKRGRRG-GGGLRGINGEARPA 875
Query: 115 PGDKPMTQR 123
G KP ++R
Sbjct: 876 RGRKPGSRR 884
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 20/111 (18%)
Query: 23 LPELSGPLAVL----LQAAEAAPGL----GPPDPRPRTLPPLPPGPTPAQQ--PG----R 68
LP +GP +L A PG+ GPP P+ P PGP P QQ PG
Sbjct: 656 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGP-PGQQGNPGPQGLP 714
Query: 69 GLAEAAGPRGSEGGNGSNPVAGLETDD----HGGKAGEGSVGGGLAVSPNP 115
G GP G +G G +AGL D H GK G+ G L P P
Sbjct: 715 GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALG-PPGP 764
Score = 35.4 bits (80), Expect = 0.030
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 44 GPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEG 103
GPP P PP PPG RG AAG G +G G+ AG E G G
Sbjct: 1357 GPPGPSGEAGPPGPPGK-------RGPPGAAGAEGRQGEKGAKGEAGAE----GPPGKTG 1405
Query: 104 SVG-GGLAVSPNP 115
VG G A P P
Sbjct: 1406 PVGPQGPAGKPGP 1418
Score = 31.2 bits (69), Expect = 0.56
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 43 LGPPDPRPRTLP------PLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAG 90
+GP P T P P PPGP P +Q GL AAG G++G G ++G
Sbjct: 981 VGPQGPTGETGPIGERGHPGPPGP-PGEQ---GLPGAAGKEGAKGDPGPQGISG 1030
Score = 30.8 bits (68), Expect = 0.73
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 25/90 (27%)
Query: 38 EAAPGL-GPPDPRPRTLPPLPPGPT-------PAQQPGRGLAEAAGPRGSEGGNGSNPVA 89
E A G GPP P P PPG P PG GPRG +G NG++
Sbjct: 1197 EGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG-----PPGPRGPQGPNGAD--- 1248
Query: 90 GLETDDHGGKAGEGSVG--GGLAVSPNPGD 117
G + GSVG GG+ PG+
Sbjct: 1249 -------GPQGPPGSVGSVGGVGEKGEPGE 1271
Score = 30.0 bits (66), Expect = 1.3
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 41 PGL----GPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDH 96
PGL G P+ T P PG ++ RG+A GPRG G G G
Sbjct: 852 PGLPGYPGRQGPKGSTGFPGFPGAN-GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPT- 909
Query: 97 GGKAGEGSVGGGLAVSPNPGDK 118
GK G GG PG++
Sbjct: 910 -GKPGPKGTSGGDGPPGPPGER 930
Score = 28.5 bits (62), Expect = 3.6
Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 26/113 (23%)
Query: 25 ELSGPLAVLLQAAEAAPGLGPP--DPRPRTLP--PLPPG-PTPAQQPG------------ 67
E P A A+ PG P +P P P P PPG P PA Q G
Sbjct: 1295 EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPG 1354
Query: 68 ----RGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPG 116
G + AGP G G G AG E G+ GE G PG
Sbjct: 1355 QPGPPGPSGEAGPPGPPGKRGPPGAAGAE-----GRQGEKGAKGEAGAEGPPG 1402
Score = 28.1 bits (61), Expect = 4.8
Identities = 33/96 (34%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 23 LPELSGPLAVLLQAAE-AAPG-LGPPDPRPRTLPPLP---PGPT-PAQQPG----RGLAE 72
LP GP A E APG GP P R P PGP PA PG +G
Sbjct: 1085 LPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG 1144
Query: 73 AAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGG 108
G +GS+G G N G G G + GG
Sbjct: 1145 EPGQKGSKGDKGENGPPG--PPGLQGPVGAPGIAGG 1178
Score = 27.3 bits (59), Expect = 8.1
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 68 RGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPG 116
RG GPRG +G G AG D G +G+ G L V PG
Sbjct: 810 RGEVGQIGPRGEDGPEGPKGRAGPTGDP--GPSGQAGEKGKLGVPGLPG 856
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 20/111 (18%)
Query: 23 LPELSGPLAVL----LQAAEAAPGL----GPPDPRPRTLPPLPPGPTPAQQ--PG----R 68
LP +GP +L A PG+ GPP P+ P PGP P QQ PG
Sbjct: 605 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGP-PGQQGNPGPQGLP 663
Query: 69 GLAEAAGPRGSEGGNGSNPVAGLETDD----HGGKAGEGSVGGGLAVSPNP 115
G GP G +G G +AGL D H GK G+ G L P P
Sbjct: 664 GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALG-PPGP 713
Score = 35.4 bits (80), Expect = 0.030
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 44 GPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEG 103
GPP P PP PPG RG AAG G +G G+ AG E G G
Sbjct: 1306 GPPGPSGEAGPPGPPGK-------RGPPGAAGAEGRQGEKGAKGEAGAE----GPPGKTG 1354
Query: 104 SVG-GGLAVSPNP 115
VG G A P P
Sbjct: 1355 PVGPQGPAGKPGP 1367
Score = 31.2 bits (69), Expect = 0.56
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 43 LGPPDPRPRTLP------PLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAG 90
+GP P T P P PPGP P +Q GL AAG G++G G ++G
Sbjct: 930 VGPQGPTGETGPIGERGHPGPPGP-PGEQ---GLPGAAGKEGAKGDPGPQGISG 979
Score = 30.8 bits (68), Expect = 0.73
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 25/90 (27%)
Query: 38 EAAPGL-GPPDPRPRTLPPLPPGPT-------PAQQPGRGLAEAAGPRGSEGGNGSNPVA 89
E A G GPP P P PPG P PG GPRG +G NG++
Sbjct: 1146 EGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG-----PPGPRGPQGPNGAD--- 1197
Query: 90 GLETDDHGGKAGEGSVG--GGLAVSPNPGD 117
G + GSVG GG+ PG+
Sbjct: 1198 -------GPQGPPGSVGSVGGVGEKGEPGE 1220
Score = 30.0 bits (66), Expect = 1.3
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 41 PGL----GPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDH 96
PGL G P+ T P PG ++ RG+A GPRG G G G
Sbjct: 801 PGLPGYPGRQGPKGSTGFPGFPGAN-GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPT- 858
Query: 97 GGKAGEGSVGGGLAVSPNPGDK 118
GK G GG PG++
Sbjct: 859 -GKPGPKGTSGGDGPPGPPGER 879
Score = 28.5 bits (62), Expect = 3.6
Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 26/113 (23%)
Query: 25 ELSGPLAVLLQAAEAAPGLGPP--DPRPRTLP--PLPPG-PTPAQQPG------------ 67
E P A A+ PG P +P P P P PPG P PA Q G
Sbjct: 1244 EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPG 1303
Query: 68 ----RGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPG 116
G + AGP G G G AG E G+ GE G PG
Sbjct: 1304 QPGPPGPSGEAGPPGPPGKRGPPGAAGAE-----GRQGEKGAKGEAGAEGPPG 1351
Score = 28.1 bits (61), Expect = 4.8
Identities = 33/96 (34%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 23 LPELSGPLAVLLQAAE-AAPG-LGPPDPRPRTLPPLP---PGPT-PAQQPG----RGLAE 72
LP GP A E APG GP P R P PGP PA PG +G
Sbjct: 1034 LPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG 1093
Query: 73 AAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGG 108
G +GS+G G N G G G + GG
Sbjct: 1094 EPGQKGSKGDKGENGPPG--PPGLQGPVGAPGIAGG 1127
Score = 27.3 bits (59), Expect = 8.1
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 68 RGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPG 116
RG GPRG +G G AG D G +G+ G L V PG
Sbjct: 759 RGEVGQIGPRGEDGPEGPKGRAGPTGDP--GPSGQAGEKGKLGVPGLPG 805
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 20/111 (18%)
Query: 23 LPELSGPLAVL----LQAAEAAPGL----GPPDPRPRTLPPLPPGPTPAQQ--PG----R 68
LP +GP +L A PG+ GPP P+ P PGP P QQ PG
Sbjct: 644 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGP-PGQQGNPGPQGLP 702
Query: 69 GLAEAAGPRGSEGGNGSNPVAGLETDD----HGGKAGEGSVGGGLAVSPNP 115
G GP G +G G +AGL D H GK G+ G L P P
Sbjct: 703 GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALG-PPGP 752
Score = 35.4 bits (80), Expect = 0.030
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 44 GPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEG 103
GPP P PP PPG RG AAG G +G G+ AG E G G
Sbjct: 1345 GPPGPSGEAGPPGPPGK-------RGPPGAAGAEGRQGEKGAKGEAGAE----GPPGKTG 1393
Query: 104 SVG-GGLAVSPNP 115
VG G A P P
Sbjct: 1394 PVGPQGPAGKPGP 1406
Score = 31.2 bits (69), Expect = 0.56
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 43 LGPPDPRPRTLP------PLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAG 90
+GP P T P P PPGP P +Q GL AAG G++G G ++G
Sbjct: 969 VGPQGPTGETGPIGERGHPGPPGP-PGEQ---GLPGAAGKEGAKGDPGPQGISG 1018
Score = 30.8 bits (68), Expect = 0.73
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 25/90 (27%)
Query: 38 EAAPGL-GPPDPRPRTLPPLPPGPT-------PAQQPGRGLAEAAGPRGSEGGNGSNPVA 89
E A G GPP P P PPG P PG GPRG +G NG++
Sbjct: 1185 EGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG-----PPGPRGPQGPNGAD--- 1236
Query: 90 GLETDDHGGKAGEGSVG--GGLAVSPNPGD 117
G + GSVG GG+ PG+
Sbjct: 1237 -------GPQGPPGSVGSVGGVGEKGEPGE 1259
Score = 30.0 bits (66), Expect = 1.3
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 41 PGL----GPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDH 96
PGL G P+ T P PG ++ RG+A GPRG G G G
Sbjct: 840 PGLPGYPGRQGPKGSTGFPGFPGAN-GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPT- 897
Query: 97 GGKAGEGSVGGGLAVSPNPGDK 118
GK G GG PG++
Sbjct: 898 -GKPGPKGTSGGDGPPGPPGER 918
Score = 28.5 bits (62), Expect = 3.6
Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 26/113 (23%)
Query: 25 ELSGPLAVLLQAAEAAPGLGPP--DPRPRTLP--PLPPG-PTPAQQPG------------ 67
E P A A+ PG P +P P P P PPG P PA Q G
Sbjct: 1283 EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPG 1342
Query: 68 ----RGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPG 116
G + AGP G G G AG E G+ GE G PG
Sbjct: 1343 QPGPPGPSGEAGPPGPPGKRGPPGAAGAE-----GRQGEKGAKGEAGAEGPPG 1390
Score = 28.1 bits (61), Expect = 4.8
Identities = 33/96 (34%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 23 LPELSGPLAVLLQAAE-AAPG-LGPPDPRPRTLPPLP---PGPT-PAQQPG----RGLAE 72
LP GP A E APG GP P R P PGP PA PG +G
Sbjct: 1073 LPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG 1132
Query: 73 AAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGG 108
G +GS+G G N G G G + GG
Sbjct: 1133 EPGQKGSKGDKGENGPPG--PPGLQGPVGAPGIAGG 1166
Score = 27.3 bits (59), Expect = 8.1
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 68 RGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPG 116
RG GPRG +G G AG D G +G+ G L V PG
Sbjct: 798 RGEVGQIGPRGEDGPEGPKGRAGPTGDP--GPSGQAGEKGKLGVPGLPG 844
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 40.0 bits (92), Expect = 0.001
Identities = 30/74 (40%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 35 QAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETD 94
Q EAAPG PP P+ PP PP P QP G A+ PR GG G +P
Sbjct: 180 QFYEAAPG--PPFAGPQ--PPPPPAPP---QP-EGAADKGDPRTGAGGGGGSPCTKATPG 231
Query: 95 DHGGKAGEGSVGGG 108
A EGS G G
Sbjct: 232 SEPKGAAEGSGGDG 245
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 34 LQAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEG-GNGSNPVAGLE 92
L AA AA L PP P P PP P P P A A+GP G G P G
Sbjct: 60 LGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAP 119
Query: 93 TDDHGGKAGEGSVGGGLAVSPNP-GDKPMTQR 123
T V G A +P P GD + ++
Sbjct: 120 T--------PALVAGSSAAAPFPHGDSALNEQ 143
Score = 28.5 bits (62), Expect = 3.6
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 45 PPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGS 104
PP + + L P P A P G+ A P S G + + G G G G+
Sbjct: 8 PPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGG-----GAGGEGLGA 62
Query: 105 VGGGLAVSPNPGDKPMT 121
L + P P P T
Sbjct: 63 AAAALLLHPPPPPPPAT 79
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 23 LPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLP----PGPTPAQQPGRGLAEAAGPRG 78
L +A L Q A AAPG P P P P PGP P G+ E
Sbjct: 1624 LTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQPGPDPPPGTDSGIEEVDSRSS 1683
Query: 79 S----EGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSP 113
S E + ++ ++ L + G G G G G+A P
Sbjct: 1684 SDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASGP 1722
Score = 35.4 bits (80), Expect = 0.030
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 46 PDPRPRTLPPLPPGPTPAQQPGRGLAEAAG-PRGSEGGNGSNPVAGLETDDHGGKAGEGS 104
P PRP +LP LP GP GL + G P G GG+ ++P A + H G + G
Sbjct: 2013 PAPRPSSLPILPSGPLYP-----GLFDIRGSPTGGAGGS-ADPFAPVFVPPHPGIS--GG 2064
Query: 105 VGGGL-----AVSPN-----PGDKPMTQRAL 125
+GG L ++SP P DKP + L
Sbjct: 2065 LGGALSGASRSLSPTRLLSLPPDKPFGAKPL 2095
Score = 32.7 bits (73), Expect = 0.19
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 46 PDPRPR---TLPPLPP----GPTPAQQPGR-GLAEAAGPRGSEGGNGSNPVAGLETDDHG 97
P P+P PP PP G +P P R L RG GG G +P G + H
Sbjct: 1009 PPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGG-GPSPTPGAPSPSHH 1067
Query: 98 GKAGEGSVGGGLAVSPNPGDKPMTQRALTVLMVV 131
G AG GGG + P + RA + M V
Sbjct: 1068 GSAGG---GGGSSQGPALRYFQLPPRAASAAMYV 1098
Score = 31.6 bits (70), Expect = 0.43
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 37 AEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGS 79
+E PG+ PP PR R++PP P P +++ G L P S
Sbjct: 1512 SEDGPGVPPPSPR-RSVPPSPTSPRASEENGLPLLVLPPPAPS 1553
Score = 30.8 bits (68), Expect = 0.73
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 45 PPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGG----NGSNPVAGLETDDHGGKA 100
PP P P P P GP + A G EGG L TD
Sbjct: 1208 PPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDEDG 1267
Query: 101 GEGSVGGGLAVSP 113
G+G +G G A P
Sbjct: 1268 GDGGLGTGAAPGP 1280
Score = 28.5 bits (62), Expect = 3.6
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 29 PLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGS 85
P A+ + + PG P P T PP PP TP G PRG GS
Sbjct: 903 PPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPVPSSSGRL-TPSPRGGPFNPGS 958
Score = 28.5 bits (62), Expect = 3.6
Identities = 29/108 (26%), Positives = 35/108 (32%), Gaps = 30/108 (27%)
Query: 38 EAAPGLGPPDPRPR-TLPPLPP-----GPTPAQQPGRGLAEAAGPRGSEGGNGSNPV--- 88
E G P DP PR L P P G P+ PG G G GG+ P
Sbjct: 1025 EMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSSQGPALRY 1084
Query: 89 ---------AGLETDDHGGKA------------GEGSVGGGLAVSPNP 115
A + G+ GE GGGL +P+P
Sbjct: 1085 FQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSP 1132
Score = 27.7 bits (60), Expect = 6.2
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 54 PPLPPG-PTPAQQPGRGLAEAAGPRGSEGGNGSNP---------VAGLETDD------HG 97
PP PP TP++ GR L + G R G +P V G TD
Sbjct: 1745 PPYPPQLMTPSKLRGRALGASGGLRPGPSGGLRDPVTPTSPTVSVTGAGTDGLLALRACS 1804
Query: 98 GKAGEGSVGGGLAVSPNPGDKPM 120
G G GG +AV P P+
Sbjct: 1805 GPPTAGVAGGPVAVEPEVPPVPL 1827
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.7 bits (91), Expect = 0.002
Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 23/107 (21%)
Query: 39 AAPGLGPPDPRPRTLPPLPPGPT-------------PAQQPGR-GLAEAAGPRGSEGGNG 84
AA +GPP P PP PPGP PA +PG G GP G +G G
Sbjct: 879 AAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG 938
Query: 85 SNPVAGLE-TDDHGGKAGEGSVGG--------GLAVSPNPGDKPMTQ 122
++ AG T G AG+ V G G P P +P Q
Sbjct: 939 ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ 985
Score = 35.4 bits (80), Expect = 0.030
Identities = 29/80 (36%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 39 AAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGG 98
A GPP P T P PPG P +G A GPRGSEG G G G
Sbjct: 327 ATGAAGPPGP---TGPAGPPG-FPGAVGAKGEAGPQGPRGSEGPQGVRGEPG-----PPG 377
Query: 99 KAGEGSVGGGLAVSPNPGDK 118
AG G PG K
Sbjct: 378 PAGAAGPAGNPGADGQPGAK 397
Score = 34.7 bits (78), Expect = 0.051
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 39 AAPG-LGPPDPRPRTLPPLPPGPT----PAQQPGR-GLAEAAGPRGSEGGNGSNPVAGLE 92
+ PG +GP PR PP PGP P +PG G + GPRG G G N
Sbjct: 176 SVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKN-----G 230
Query: 93 TDDHGGKAG 101
D GK G
Sbjct: 231 DDGEAGKPG 239
Score = 33.1 bits (74), Expect = 0.15
Identities = 27/72 (37%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 54 PPLPPGPT-------PAQQPG-RGLAEAAGPRGSEGGNGSNPVAG-LETDDHGGKAGEGS 104
PP P GP PA PG +GL AGP G G G V G L G GE
Sbjct: 621 PPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 680
Query: 105 VGGGLAVSPNPG 116
G V PG
Sbjct: 681 FPGERGVQGPPG 692
Score = 32.3 bits (72), Expect = 0.25
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 19/83 (22%)
Query: 29 PLAVLLQAAEAAPG----LGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNG 84
P A L + +PG GPP P + P PPGP P + G+ GP+G+ G
Sbjct: 535 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGP-PGARGQAGVMGFPGPKGAAG--- 590
Query: 85 SNPVAGLETDDHGGKAGEGSVGG 107
GKAGE V G
Sbjct: 591 -----------EPGKAGERGVPG 602
Score = 31.2 bits (69), Expect = 0.56
Identities = 33/93 (35%), Positives = 34/93 (36%), Gaps = 17/93 (18%)
Query: 37 AEAAPGL-GPPDP------RPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVA 89
A APG GP P R T P P GP RG A GPRG +G G
Sbjct: 1047 APGAPGAPGPVGPAGKSGDRGETGPAGPAGPV-GPVGARGPAGPQGPRGDKGETG----- 1100
Query: 90 GLETDDHGGKAGEGSVGGGLAVSPNPGDKPMTQ 122
E D G K G GL P P P Q
Sbjct: 1101 --EQGDRGIKGHRGF--SGLQGPPGPPGSPGEQ 1129
Score = 27.7 bits (60), Expect = 6.2
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 41 PG-LGPPDPRPRT------LPPLPPGPT-PAQQPGRG 69
PG +GPP PR RT PP PPGP P P G
Sbjct: 1159 PGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 27.3 bits (59), Expect = 8.1
Identities = 29/80 (36%), Positives = 30/80 (37%), Gaps = 14/80 (17%)
Query: 44 GPPD----PRPRTLPPLPPGPTPAQQPG-RGLAEAAGPRGSEGGNGSNPVAGLETDDHGG 98
GPP P R P P G RG AGP+GS G G AGL G
Sbjct: 482 GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLP----GA 537
Query: 99 KAGEGSVGGGLAVSPNPGDK 118
K GS G SP P K
Sbjct: 538 KGLTGSPG-----SPGPDGK 552
Score = 27.3 bits (59), Expect = 8.1
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 58 PGPTPAQQ----PG-RGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVS 112
PGP+ A+ PG RG+ GP G G NG+ G + D G G G +
Sbjct: 670 PGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGD--AGAPGAPGSQGAPGLQ 727
Query: 113 PNPGDK 118
PG++
Sbjct: 728 GMPGER 733
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 19/113 (16%)
Query: 17 VLLLLLLPELSGPLAVLLQAAEAAPGLGPPDPRPRT--------------LPPLPPGPTP 62
+LL LP G L + + + PP RPRT +PP P P P
Sbjct: 991 LLLSQALPAPPGALPLAPSSTAHSQTTPPPSSRPRTTASVPRTTVWPVLTVPPTAPSPAP 1050
Query: 63 AQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNP 115
+ +A A G GS G+ ++G + GG G + G +P P
Sbjct: 1051 SL-----VASAFGESGSTDGSSDEELSGDQEASGGGSGGLEPLEGSSVATPGP 1098
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/76 (39%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 38 EAAPGLGPP---DPRPRTLPPLPPG---PTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGL 91
+AAPG+GPP P P+ LPP PPG P PA QP L P G+G P A
Sbjct: 311 QAAPGVGPPFSQAPAPQ-LPPGPPGAPKPPPASQP--SLVSTVAP-----GSGLAPTAQP 362
Query: 92 ETDDHGGKAGEGSVGG 107
G G V G
Sbjct: 363 GAPSMAGTVAPGGVSG 378
Score = 28.1 bits (61), Expect = 4.8
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 42 GLGPPDPRPRTLPPLPPGPTPAQQPGRG-----LAEAAGPRGSEGGNGSNP 87
GLG P P L P P PAQ P R + + GPRG G P
Sbjct: 685 GLGQPQLGPPLLHPPPAQSWPAQLPPRAPLPGQMLLSGGPRGPVPQPGLQP 735
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 39.7 bits (91), Expect = 0.002
Identities = 31/88 (35%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 37 AEAAPG-LGP---PDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLE 92
AE PG +GP P P PP PPG QPG A G +G G G +AGL
Sbjct: 1274 AEGEPGAMGPQGRPGPPGHVGPPGPPG-----QPGPAGISAVGLKGDRGATGERGLAGLP 1328
Query: 93 ----TDDHGGKAGEGSVGGGLAVSPNPG 116
H G GE G PG
Sbjct: 1329 GQPGPPGHPGPPGEPGTDGAAGKEGPPG 1356
Score = 33.5 bits (75), Expect = 0.11
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 41 PG-LGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGK 99
PG +GP PP PGP PG + GP G +G GS+ + G E GGK
Sbjct: 437 PGFVGPEGLAGEPGPPGLPGPPGIGLPGTP-GDPGGPPGPKGDKGSSGIPGKE--GPGGK 493
Query: 100 AGEGSVGG 107
G+ V G
Sbjct: 494 PGKPGVKG 501
Score = 30.4 bits (67), Expect = 0.96
Identities = 28/89 (31%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 35 QAAEAAPGL----GPPDPRPRTLPPLPPGPTPAQ--QPGRGLAEAAGPRGSEGGNGSNPV 88
Q APGL G P PR PPGPT + Q G+ A GP G G + S P
Sbjct: 793 QGEPGAPGLPGIQGLPGPRG------PPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPP 846
Query: 89 AGLETDDHGGKAGEGSVGGGLAVSPNPGD 117
G G G PG+
Sbjct: 847 GRDGQQGQTGLRGTPGEKGPRGEKGEPGE 875
Score = 29.6 bits (65), Expect = 1.6
Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 23 LPELSGPLAVL-LQAAEAAPGLGPPDPRPRTLPPLPPG----PTPAQQPGRGLAEAAGPR 77
LP + GP + +Q PG G P+ P PG P P PG G +
Sbjct: 766 LPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGP--TGEKGAQ 823
Query: 78 GSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPGDK 118
GS G G+ G G G G + PG+K
Sbjct: 824 GSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEK 864
Score = 27.3 bits (59), Expect = 8.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 66 PGRGLAEAAGPRGSEGGNGSNPVAGLE-TDDHGGKAGEGSVGGGLAVSPNPG 116
P L A GP+G +G +G+ +GL + G+ GE GG V PG
Sbjct: 366 PDAPLQCAEGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPG 417
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 47 DPRPRTLP-PLPPGPTPA---QQPGRGLAEAA--GPRGSEGGNGSNPVAGLETDDHGGKA 100
DP RT P P+P GP PA +QPGRG A AA GP +G G + + G K+
Sbjct: 170 DPPTRTAPLPMPEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS 229
Query: 101 GEGS 104
G+
Sbjct: 230 SRGA 233
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 47 DPRPRTLP-PLPPGPTPA---QQPGRGLAEAA--GPRGSEGGNGSNPVAGLETDDHGGKA 100
DP RT P P+P GP PA +QPGRG A AA GP +G G + + G K+
Sbjct: 170 DPPTRTAPLPMPEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS 229
Query: 101 GEGS 104
G+
Sbjct: 230 SRGA 233
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 39.3 bits (90), Expect = 0.002
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 34 LQAAEAAPGLGPPDPRP---RTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAG 90
+ E PG G D + P PGP P + G G A G GG G+ V G
Sbjct: 169 MSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGG---AGGSSVGTGGGGTGGVGG 225
Query: 91 LETDDHGGKAGEGSVGGGLAVSPNPGDKP 119
+ G G G++GGG P+P P
Sbjct: 226 GAGSEDSGDRG-GTLGGGTLGPPSPPGAP 253
>gi|189339239 hypothetical protein LOC55009 [Homo sapiens]
Length = 132
Score = 39.3 bits (90), Expect = 0.002
Identities = 51/177 (28%), Positives = 72/177 (40%), Gaps = 49/177 (27%)
Query: 13 LLASVLLLLLLPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAE 72
+L LLLLLL L LA L AE A P P TL P PP T QPG
Sbjct: 5 VLQPPLLLLLLALL---LAALPCGAEEA---SPLRPAQVTLSP-PPAVTNGSQPG----- 52
Query: 73 AAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPGDKPMTQRALTVLMVVS 132
P S + P G+ G L R+ V++
Sbjct: 53 --APHNS---THTRP--------------PGASGSALT------------RSFYVILGFC 81
Query: 133 GAVLVYFVVRTVRMRRRNRKTRRYGVLDTNIENMELTPLEQDDEDDDNTLFDANHPR 189
G +YF++R R+++ R RRYG+L + E+ L+ D+E T+F++ + R
Sbjct: 82 GLTALYFLIRAFRLKKPQR--RRYGLLANTEDPTEMASLDSDEE----TVFESRNLR 132
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/121 (33%), Positives = 43/121 (35%), Gaps = 36/121 (29%)
Query: 23 LPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPL----PPG--------PTPAQQP---- 66
LP + PL+ L A A P P P PPL PPG P A +P
Sbjct: 192 LPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAAL 251
Query: 67 --------GRGLAEAAGPRGSEGGNGSNPVAGL-----------ETDDHGGKAGEGSVGG 107
RGL G GS GG GS AGL HGG G G GG
Sbjct: 252 LGRAEDALARGLPGGGGGTGS-GGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGG 310
Query: 108 G 108
G
Sbjct: 311 G 311
Score = 27.7 bits (60), Expect = 6.2
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 25 ELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGN 83
EL+GPL + A APGLG L LPP A + + A AA G+ GG+
Sbjct: 83 ELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQH-AAAAAVAGAHGGH 140
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 38.9 bits (89), Expect = 0.003
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 33 LLQAAEAAPGLGPPDPRPRTLPPLPPGP--TPAQQPGRGLAEAAGPRGSEGGNGSN---- 86
L+ A G PPD P LP + P TPAQ+ G+ AGP+G +G G
Sbjct: 518 LITAGGEESGSPPPDGPPLPLPTVAPERWITPAQREHVGMKGQAGPKGEKGDAGEELPGP 577
Query: 87 PVAGLETDDHGGKAGEGS-VGGGLAVSPNPGD 117
P G EGS +G G V GD
Sbjct: 578 PEPSGPVGPTAGAEAEGSGLGWGSDVGSGSGD 609
Score = 33.5 bits (75), Expect = 0.11
Identities = 27/89 (30%), Positives = 30/89 (33%), Gaps = 18/89 (20%)
Query: 44 GPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNG---------SNPVAGL--- 91
GPP PP PPGP PG G G +EG S P A +
Sbjct: 712 GPPGVMGPPGPPGPPGP-----PGPGCTMGLGFEDTEGSGSTQLLNEPKLSRPTAAIGLK 766
Query: 92 -ETDDHGGKAGEGSVGGGLAVSPNPGDKP 119
E D G K G G + P P P
Sbjct: 767 GEKGDRGPKGERGMDGASIVGPPGPRGPP 795
Score = 31.6 bits (70), Expect = 0.43
Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 38/132 (28%)
Query: 24 PELSGPLAVLLQAAEAAPGLG----------------------PPDPRPRTLPPLPPGP- 60
PE SGP+ A GLG P P P LP +P P
Sbjct: 578 PEPSGPVGPTAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGPPGLPGIPGKPG 637
Query: 61 ---------TPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVG----- 106
+P + G GP G G +G+ + G++ + G + GSVG
Sbjct: 638 TDVFMGPPGSPGEDGPAGEPGPPGPEGQPGVDGATGLPGMK-GEKGARGPNGSVGEKGDP 696
Query: 107 GGLAVSPNPGDK 118
G + PG K
Sbjct: 697 GNRGLPGPPGKK 708
Score = 31.2 bits (69), Expect = 0.56
Identities = 26/65 (40%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 28 GPLAVLLQAAEAAPGL-GPP------DPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSE 80
G V Q APGL GPP DP P PP PPGP L GP G
Sbjct: 1068 GETVVGPQGPPGAPGLPGPPGFGRPGDPGPPG-PPGPPGPPAILGAAVALPGPPGPPGQP 1126
Query: 81 GGNGS 85
G GS
Sbjct: 1127 GLPGS 1131
Score = 27.7 bits (60), Expect = 6.2
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 54 PPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHG-----GKAGEGSVGGG 108
P LP P PA Q G + GP G+ G G P D G G G ++ G
Sbjct: 1055 PGLPGNPGPAGQKGETVVGPQGPPGAPGLPG--PPGFGRPGDPGPPGPPGPPGPPAILGA 1112
Query: 109 LAVSPNPGDKP 119
P P P
Sbjct: 1113 AVALPGPPGPP 1123
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 38.9 bits (89), Expect = 0.003
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 30/102 (29%)
Query: 44 GPP--DPRPRTLPPLP-------------PGPTPA---QQPGRGLAEAAGPRGSEGGNGS 85
GPP P P TLPP P PGP P + P GL RG EGG S
Sbjct: 284 GPPAGSPPPLTLPPTPSPATAVTAASAQPPGPAPPITLEPPAPGLK-----RGREGGRAS 338
Query: 86 NP-------VAGLETDDHGGKAGEGSVGGGLAVSPNPGDKPM 120
++G+ T GG G G + G ++S G + +
Sbjct: 339 TRDRKMLKFISGIFTKSTGGPPGSGPLPGPPSLSSGSGSREL 380
Score = 35.0 bits (79), Expect = 0.039
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 34 LQAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGS--EGGNGSNPVAG- 90
L + ++ G G +P + P P + PGR L+ A P G GG +P G
Sbjct: 76 LWISTSSAGTGGAEPPALSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGG 135
Query: 91 ---------LETDDHGGKAGEGSVGGGL--AVSPNPG 116
L + GG EG GGG+ + SP+PG
Sbjct: 136 APTSSRRPLLSSPSWGGPEPEGRAGGGIPGSSSPHPG 172
Score = 30.4 bits (67), Expect = 0.96
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 52 TLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNP 87
TL L P P P A AAG RGSE G+ +P
Sbjct: 20 TLVKLESVPPPPPSPSAAAAGAAGARGSETGDPGSP 55
Score = 28.5 bits (62), Expect = 3.6
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 18/99 (18%)
Query: 35 QAAEAAPGLGPPDP-----RPRTLPPLPPGPTPAQQPGRGLAEAAGPRG---------SE 80
+A PG P P R + PP PP P P + A+A G +G SE
Sbjct: 158 RAGGGIPGSSSPHPGTGSRRLKVAPP-PPAPKPCKTVTTSGAKAGGGKGAGSRLSWPESE 216
Query: 81 GG---NGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPG 116
G GS AG + GGG S + G
Sbjct: 217 GKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGG 255
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 45 PPDPRPRTLPPLPPGP--TPAQQPGRGLAEAAGPRGSEG--------GNGSNPVAGLETD 94
PP P P P P P TPA PG G +A PR S G G S AGL +
Sbjct: 129 PPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSR 188
Query: 95 DHGGKAGEGSVGGGLAVSPNPGD 117
D +V + P+P D
Sbjct: 189 DTPSPVDPDTVEVLMTFEPDPAD 211
>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sapiens]
Length = 1258
Score = 38.5 bits (88), Expect = 0.004
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 15 ASVLLLLLLPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGPTPA 63
+++ L L L GP+ AEA GPP P+ PPLPPGP+PA
Sbjct: 1061 SAIFLPPSLDPLPGPVVRGRGGAEAR---GPPPPKAHPRPPLPPGPSPA 1106
Score = 27.7 bits (60), Expect = 6.2
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 25 ELSGPLAVLLQAAEAAPGLGPPDPRPRTLP---PLPPGPTPAQQPGRGLAEAAGPRGS 79
E S PL+ L + E P G P PR P PL P P P A P+ S
Sbjct: 923 EASCPLSRLFEEPEKPPPTGRPPAPPRAAPREEPLTPRLKPEGAPEPEGVAAPPPKNS 980
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 39 AAPGLGPPDPRPRTLPPLPP---GPTPAQQ----PGRGLAEAAGPRGSEGG---NGSNPV 88
A PG PP P +P PP GP P PG G + GP G +GG G P
Sbjct: 160 APPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPG 219
Query: 89 AGLETDDHGGKAGEGSVGGG 108
G GG GGG
Sbjct: 220 GGPGLSTPGGHPKPPHRGGG 239
Score = 33.1 bits (74), Expect = 0.15
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 39 AAPGLGP-PDPRPR-TLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDH 96
A PG GP P P P + PPG P P G+ + G P A +
Sbjct: 141 APPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTP----PQAGGPPPPPAAVPGPGP 196
Query: 97 GGKAGE---GSVGGGLAVSPNPGDKP 119
G K G G GG + P PG P
Sbjct: 197 GPKQGPGPGGPKGGKMPGGPKPGGGP 222
Score = 28.5 bits (62), Expect = 3.6
Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 35 QAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEG-----GNGSNPVA 89
Q + P PP P PP P P QQP +++ P ++G G GS P A
Sbjct: 68 QQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPA 127
Query: 90 GLETDDHGGKAGEGSVGGGLAVSPNP 115
G G +P P
Sbjct: 128 SSSAPPATPPTSGAPPGSGPGPTPTP 153
>gi|31657109 zinc finger protein 282 [Homo sapiens]
Length = 671
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 20/98 (20%)
Query: 27 SGPLAVLLQAAEAAPGLGPPDPRPRTLPPLP---PGPTPAQQPGRGLAEAAGPRGSEG-- 81
SGP LL P PP P+P+ PP P P P P +AE G S G
Sbjct: 391 SGPSDSLLMVKNPPPA--PPQPQPQPQPPQPQLQSQPQPQSLPPIAVAENPGGPPSRGLL 448
Query: 82 -----------GNGSNPVAGLETDDHGGKAGEGSVGGG 108
G+G P G + GG G+G GGG
Sbjct: 449 DDGFQVLPGERGSGEAPPGGDRST--GGGGGDGGGGGG 484
>gi|23510333 pygopus homolog 2 [Homo sapiens]
Length = 406
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 17/104 (16%)
Query: 28 GPLAVLLQAAEAAPGLGPPDPRPRTLPPLPP-GPTPAQQPGRGLAEA------------- 73
GP+ LGPP R P P GP+P Q+PG+GL
Sbjct: 191 GPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPG 250
Query: 74 -AGPRGSEGGNGSNPVA--GLETDDHGGKAGEGSVGGGLAVSPN 114
GP G +GG NP A + H G G + PN
Sbjct: 251 FPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPN 294
Score = 31.2 bits (69), Expect = 0.56
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 26 LSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGPT-PA-QQPGRGLAEAAGPRGSEGGN 83
+ G +A + + G G P P R PP PP P PA P +G +
Sbjct: 106 VQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQ 165
Query: 84 GSNPVAGLETDDHGGKAGEGSVGG-GLAVSPNPGDKPMTQ 122
N G G+ G VGG G +SP G P +
Sbjct: 166 PFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAE 205
>gi|87239981 tankyrase, TRF1-interacting ankyrin-related
ADP-ribose polymerase [Homo sapiens]
Length = 1327
Score = 38.1 bits (87), Expect = 0.005
Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 35 QAAEAAPGLG--PPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPR 77
Q + APG PP P P P L PG TPA GLA A PR
Sbjct: 16 QQLQPAPGASAPPPPPPPPLSPGLAPGTTPASPTASGLAPFASPR 60
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 38.1 bits (87), Expect = 0.005
Identities = 31/73 (42%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 37 AEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRG-LAEAAGPRGSEGGNGSNPVAGLETDD 95
A+A PG P R R P PP P PA P RG L PRG PVAG
Sbjct: 25 ADARPGAKAPSRRRRDCRPPPPPPPPA-GPSRGPLPPPPPPRGL-----GPPVAG----- 73
Query: 96 HGGKAGEGSVGGG 108
G AG G GGG
Sbjct: 74 -GAAAGAGMPGGG 85
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 38.1 bits (87), Expect = 0.005
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 44 GPPDPRPRTLPPLPPGPT-PAQQPGR-GLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAG 101
G P PR PP PPGP P PG G AG RG+ G +G V G E + G
Sbjct: 300 GVPGPRGPPGPPGPPGPRGPPGPPGTPGSQGLAGERGTVGPSGEPGVKGEEGEKAATAEG 359
Query: 102 EG 103
EG
Sbjct: 360 EG 361
Score = 34.7 bits (78), Expect = 0.051
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 44 GPPDPRPRTLPPLPPGPTPAQQPGRGLAEAAGPRGSEGGNGSNPVAGLETDDHGGKAGEG 103
GP P +T PP P GP P + RG GP G G G GL G+ G
Sbjct: 197 GPAGPPGQTGPPGPAGP-PGSKGDRGQTGEKGPAGPPGLLGPPGPRGLP-----GEMGRP 250
Query: 104 SVGGGLAVSPNPGDKP 119
G + NPG P
Sbjct: 251 GPPGPPGPAGNPGPSP 266
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,763,943
Number of Sequences: 37866
Number of extensions: 658718
Number of successful extensions: 10792
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 795
Number of HSP's that attempted gapping in prelim test: 6423
Number of HSP's gapped (non-prelim): 4052
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.