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Search of human proteins with 35493878
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|35493878 reticuloendotheliosis viral oncogene homolog B
[Homo sapiens]
(579 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|35493878 reticuloendotheliosis viral oncogene homolog B [Homo... 1196 0.0
gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog ... 323 3e-88
gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog ... 320 3e-87
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 285 1e-76
gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens] 224 2e-58
gi|117320531 nuclear factor of kappa light polypeptide gene enha... 221 1e-57
gi|117320540 nuclear factor of kappa light polypeptide gene enha... 221 1e-57
gi|117320527 nuclear factor of kappa light polypeptide gene enha... 221 1e-57
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom... 45 2e-04
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo... 45 2e-04
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho... 45 2e-04
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho... 45 2e-04
gi|27886524 nuclear factor of activated T-cells 5 isoform a [Hom... 45 2e-04
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 42 0.001
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 42 0.002
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 41 0.003
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 40 0.006
gi|153792074 proline rich 12 [Homo sapiens] 39 0.010
gi|55750053 atrophin-1 [Homo sapiens] 39 0.017
gi|55750041 atrophin-1 [Homo sapiens] 39 0.017
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 38 0.022
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 38 0.022
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 38 0.022
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 37 0.038
gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens] 37 0.038
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 37 0.038
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 37 0.050
gi|154355004 strawberry notch homolog 2 isoform 2 [Homo sapiens] 37 0.065
gi|154355002 strawberry notch homolog 2 isoform 1 [Homo sapiens] 37 0.065
gi|163965366 nascent polypeptide-associated complex alpha subuni... 37 0.065
>gi|35493878 reticuloendotheliosis viral oncogene homolog B [Homo
sapiens]
Length = 579
Score = 1196 bits (3093), Expect = 0.0
Identities = 579/579 (100%), Positives = 579/579 (100%)
Query: 1 MLRSGPASGPSVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTDELEIIDEY 60
MLRSGPASGPSVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTDELEIIDEY
Sbjct: 1 MLRSGPASGPSVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTDELEIIDEY 60
Query: 61 IKENGFGLDGGQPGPGEGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCPLGRLVSPAPG 120
IKENGFGLDGGQPGPGEGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCPLGRLVSPAPG
Sbjct: 61 IKENGFGLDGGQPGPGEGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCPLGRLVSPAPG 120
Query: 121 PGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLREVEV 180
PGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLREVEV
Sbjct: 121 PGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLREVEV 180
Query: 181 TACLVWKDWPHRVHPHSLVGKDCTDGICRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAIE 240
TACLVWKDWPHRVHPHSLVGKDCTDGICRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAIE
Sbjct: 181 TACLVWKDWPHRVHPHSLVGKDCTDGICRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAIE 240
Query: 241 RKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQMRRMDPVLSEPVYDKKSTNT 300
RKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQMRRMDPVLSEPVYDKKSTNT
Sbjct: 241 RKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQMRRMDPVLSEPVYDKKSTNT 300
Query: 301 SELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSRASWEGRADFSQADVHRQIAIV 360
SELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSRASWEGRADFSQADVHRQIAIV
Sbjct: 301 SELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSRASWEGRADFSQADVHRQIAIV 360
Query: 361 FKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYLPRDHDSYGVDKKRKRGMPDVLG 420
FKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYLPRDHDSYGVDKKRKRGMPDVLG
Sbjct: 361 FKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYLPRDHDSYGVDKKRKRGMPDVLG 420
Query: 421 ELNSSDPHGIESKRRKKKPAILDHFLPNHGSGPFLPPSALLPDPDFFSGTVSLPGLEPPG 480
ELNSSDPHGIESKRRKKKPAILDHFLPNHGSGPFLPPSALLPDPDFFSGTVSLPGLEPPG
Sbjct: 421 ELNSSDPHGIESKRRKKKPAILDHFLPNHGSGPFLPPSALLPDPDFFSGTVSLPGLEPPG 480
Query: 481 GPDLLDDGFAYDPTAPTLFTMLDLLPPAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQ 540
GPDLLDDGFAYDPTAPTLFTMLDLLPPAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQ
Sbjct: 481 GPDLLDDGFAYDPTAPTLFTMLDLLPPAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQ 540
Query: 541 APGPGDGGTASLVGSNMFPNHYREAAFGGGLLSPGPEAT 579
APGPGDGGTASLVGSNMFPNHYREAAFGGGLLSPGPEAT
Sbjct: 541 APGPGDGGTASLVGSNMFPNHYREAAFGGGLLSPGPEAT 579
>gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 1 [Homo sapiens]
Length = 551
Score = 323 bits (827), Expect = 3e-88
Identities = 186/422 (44%), Positives = 245/422 (58%), Gaps = 27/422 (6%)
Query: 114 LVSPA-PGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDC 172
L+ PA P P++ I EQPKQRGMRFRY+CEGRSAGSI GE ST+ +KT P I++
Sbjct: 7 LIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGY 66
Query: 173 GGLREVEVTACLVWKDWPHRVHPHSLVGKDCTDGICRVRLRPHVSPRHSFNNLGIQCVRK 232
G V ++ LV KD PHR HPH LVGKDC DG L P HSF NLGIQCV+K
Sbjct: 67 TGPGTVRIS--LVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCI-HSFQNLGIQCVKK 123
Query: 233 KEIEAAIERKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQMRRMDPVLSEPV 292
+++E AI ++IQ +P+ + + D+N VR+CFQ + RD G+ R+ PVLS P+
Sbjct: 124 RDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLSHPI 183
Query: 293 YDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSRASWEGRADFSQAD 352
+D ++ NT+EL+ICR+N+ SG C GG+E++LLCDKVQKEDI V F+ WE R FSQAD
Sbjct: 184 FDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQAD 243
Query: 353 VHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYLPRDHDSYGVDKKRK 412
VHRQ+AIVF+TPPY D + PV V++ L+R +D SEP+ F YLP D + +++KRK
Sbjct: 244 VHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRK 303
Query: 413 RGMPDVLGELNSS------DPHGIESKRRKKKPAILDHFLPNHGSGPFLPPSAL------ 460
R + S DP RR P+ +P P+ S+L
Sbjct: 304 RTYETFKSIMKKSPFSGPTDPR--PPPRRIAVPSRSSASVPKPAPQPYPFTSSLSTINYD 361
Query: 461 -LPDPDFFSGTVSLPGLEPPGGPDLLDDGFAYDPTAPTLFTML-------DLLPPAPPHA 512
P F SG +S P P +L A P AP + + L +L P PP A
Sbjct: 362 EFPTMVFPSGQISQASALAPAPPQVLPQAPAPAP-APAMVSALAQAPAPVPVLAPGPPQA 420
Query: 513 SA 514
A
Sbjct: 421 VA 422
>gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 2 [Homo sapiens]
Length = 548
Score = 320 bits (819), Expect = 3e-87
Identities = 186/422 (44%), Positives = 245/422 (58%), Gaps = 30/422 (7%)
Query: 114 LVSPA-PGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDC 172
L+ PA P P++ I EQPKQRGMRFRY+CEGRSAGSI GE ST+ +KT P I++
Sbjct: 7 LIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGY 66
Query: 173 GGLREVEVTACLVWKDWPHRVHPHSLVGKDCTDGICRVRLRPHVSPRHSFNNLGIQCVRK 232
G V ++ LV KD PHR HPH LVGKDC DG L P HSF NLGIQCV+K
Sbjct: 67 TGPGTVRIS--LVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCI-HSFQNLGIQCVKK 123
Query: 233 KEIEAAIERKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQMRRMDPVLSEPV 292
+++E AI ++IQ +P+ + + D+N VR+CFQ + RD G+ R+ PVLS P+
Sbjct: 124 RDLEQAISQRIQTNNNPFQE---EQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLSHPI 180
Query: 293 YDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSRASWEGRADFSQAD 352
+D ++ NT+EL+ICR+N+ SG C GG+E++LLCDKVQKEDI V F+ WE R FSQAD
Sbjct: 181 FDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQAD 240
Query: 353 VHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYLPRDHDSYGVDKKRK 412
VHRQ+AIVF+TPPY D + PV V++ L+R +D SEP+ F YLP D + +++KRK
Sbjct: 241 VHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRK 300
Query: 413 RGMPDVLGELNSS------DPHGIESKRRKKKPAILDHFLPNHGSGPFLPPSAL------ 460
R + S DP RR P+ +P P+ S+L
Sbjct: 301 RTYETFKSIMKKSPFSGPTDPR--PPPRRIAVPSRSSASVPKPAPQPYPFTSSLSTINYD 358
Query: 461 -LPDPDFFSGTVSLPGLEPPGGPDLLDDGFAYDPTAPTLFTML-------DLLPPAPPHA 512
P F SG +S P P +L A P AP + + L +L P PP A
Sbjct: 359 EFPTMVFPSGQISQASALAPAPPQVLPQAPAPAP-APAMVSALAQAPAPVPVLAPGPPQA 417
Query: 513 SA 514
A
Sbjct: 418 VA 419
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 285 bits (728), Expect = 1e-76
Identities = 147/292 (50%), Positives = 200/292 (68%), Gaps = 7/292 (2%)
Query: 125 PHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLREVEVTACL 184
P++ I EQP+QRGMRFRY+CEGRSAGSI GE ST+ ++T P+I++ + G +V +T L
Sbjct: 8 PYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGKVRIT--L 65
Query: 185 VWKDWPHRVHPHSLVGKDCTDGICRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAIERKIQ 244
V K+ P++ HPH LVGKDC DG P F NLGI+CV+KKE++ AI +I+
Sbjct: 66 VTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLF-FQNLGIRCVKKKEVKEAIITRIK 124
Query: 245 LGIDPYNAGS--LKNHQEVDMNVVRICFQASYRDQQGQMRR-MDPVLSEPVYDKKSTNTS 301
GI+P+N L + ++ D+NVVR+CFQ D+ G + + PV+S P+YD ++ NT+
Sbjct: 125 AGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRAPNTA 184
Query: 302 ELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSRASWEGRADFSQADVHRQIAIVF 361
ELRICR+NK G GG+E++LLCDKVQK+DI V F WE + FSQADVHRQ+AIVF
Sbjct: 185 ELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVF 244
Query: 362 KTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYLPRDHDSYGVDKKRKR 413
KTPPY I EPVTV + L+R +D SE + F YLP + D+YG K+++
Sbjct: 245 KTPPY-CKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQK 295
>gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens]
Length = 969
Score = 224 bits (571), Expect = 2e-58
Identities = 137/331 (41%), Positives = 182/331 (54%), Gaps = 41/331 (12%)
Query: 125 PHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLREVEVTACL 184
P+L I EQPKQRG RFRY CEG S G + G SS + K+ P +++ C + +V L
Sbjct: 43 PYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKI--CNYVGPAKVIVQL 100
Query: 185 VWKDWPHRVHPHSLVGKDCTDGICRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAIE-RKI 243
V +H HSLVGK C DGIC V P F NLGI V KK++ +E R
Sbjct: 101 VTNGKNIHLHAHSLVGKHCEDGICTVTAGPK-DMVVGFANLGILHVTKKKVFETLEARMT 159
Query: 244 QLGIDPYNAG-------------------------------SLKNHQEVDMNVVRICFQA 272
+ I YN G +L+ +E+D++VVR+ F A
Sbjct: 160 EACIRGYNPGLLVHPDLAYLQAEGGGDRQLGDREKELIRQAALQQTKEMDLSVVRLMFTA 219
Query: 273 SYRDQQGQM-RRMDPVLSEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKE 331
D G RR++PV+S+ +YD K+ N S L+I R+++ +G TGGEE+YLLCDKVQK+
Sbjct: 220 FLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKD 279
Query: 332 DISVVFSRAS-----WEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTD 386
DI + F WEG DFS DVHRQ AIVFKTP Y+D+ I +P +V V L+R +D
Sbjct: 280 DIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDINITKPASVFVQLRRKSD 339
Query: 387 GVCSEPLPFTYLPRDHDSYGVDKKRKRGMPD 417
SEP PF Y P D V +KR++ MP+
Sbjct: 340 LETSEPKPFLYYPEIKDKEEVQRKRQKLMPN 370
>gi|117320531 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform a [Homo sapiens]
Length = 900
Score = 221 bits (564), Expect = 1e-57
Identities = 131/318 (41%), Positives = 180/318 (56%), Gaps = 21/318 (6%)
Query: 117 PAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLR 176
PAP P+LVI EQPKQRG RFRY CEG S G + G SS + KT P +++ + G
Sbjct: 30 PAPETADGPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPA 89
Query: 177 EVEVTACLVWKDWPHRVHPHSLVGKDCTD-GICRVRLRPHVSPRHSFNNLGIQCVRKKEI 235
++EV LV P R H HSLVGK C++ GIC V + P FNNLG+ V KK +
Sbjct: 90 KIEVD--LVTHSDPPRAHAHSLVGKQCSELGICAVSVGPK-DMTAQFNNLGVLHVTKKNM 146
Query: 236 EAAIERKIQL--------GIDPYNAGSLKNHQE-----VDMNVVRICFQASYRDQQGQMR 282
+ +K+Q G+ L+ + +D+++VR+ F A R G
Sbjct: 147 MGTMIQKLQRQRLRSRPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAFLRASDGSFS 206
Query: 283 R-MDPVLSEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKEDISVVF---S 338
+ PV+S+P++D KS S L+I R++K +G GG+E+YLLCDKVQK+DI V F
Sbjct: 207 LPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDD 266
Query: 339 RASWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYL 398
W+ DFS DVH+Q AIVF+TPPY ++I PVTV + L+R G S+ FTY
Sbjct: 267 ENGWQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDVSDSKQFTYY 326
Query: 399 PRDHDSYGVDKKRKRGMP 416
P D V +KR++ +P
Sbjct: 327 PLVEDKEEVQRKRRKALP 344
>gi|117320540 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform b [Homo sapiens]
Length = 899
Score = 221 bits (564), Expect = 1e-57
Identities = 131/318 (41%), Positives = 180/318 (56%), Gaps = 21/318 (6%)
Query: 117 PAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLR 176
PAP P+LVI EQPKQRG RFRY CEG S G + G SS + KT P +++ + G
Sbjct: 30 PAPETADGPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPA 89
Query: 177 EVEVTACLVWKDWPHRVHPHSLVGKDCTD-GICRVRLRPHVSPRHSFNNLGIQCVRKKEI 235
++EV LV P R H HSLVGK C++ GIC V + P FNNLG+ V KK +
Sbjct: 90 KIEVD--LVTHSDPPRAHAHSLVGKQCSELGICAVSVGPK-DMTAQFNNLGVLHVTKKNM 146
Query: 236 EAAIERKIQL--------GIDPYNAGSLKNHQE-----VDMNVVRICFQASYRDQQGQMR 282
+ +K+Q G+ L+ + +D+++VR+ F A R G
Sbjct: 147 MGTMIQKLQRQRLRSRPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAFLRASDGSFS 206
Query: 283 R-MDPVLSEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKEDISVVF---S 338
+ PV+S+P++D KS S L+I R++K +G GG+E+YLLCDKVQK+DI V F
Sbjct: 207 LPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDD 266
Query: 339 RASWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYL 398
W+ DFS DVH+Q AIVF+TPPY ++I PVTV + L+R G S+ FTY
Sbjct: 267 ENGWQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDVSDSKQFTYY 326
Query: 399 PRDHDSYGVDKKRKRGMP 416
P D V +KR++ +P
Sbjct: 327 PLVEDKEEVQRKRRKALP 344
>gi|117320527 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform b [Homo sapiens]
Length = 899
Score = 221 bits (564), Expect = 1e-57
Identities = 131/318 (41%), Positives = 180/318 (56%), Gaps = 21/318 (6%)
Query: 117 PAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLR 176
PAP P+LVI EQPKQRG RFRY CEG S G + G SS + KT P +++ + G
Sbjct: 30 PAPETADGPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPA 89
Query: 177 EVEVTACLVWKDWPHRVHPHSLVGKDCTD-GICRVRLRPHVSPRHSFNNLGIQCVRKKEI 235
++EV LV P R H HSLVGK C++ GIC V + P FNNLG+ V KK +
Sbjct: 90 KIEVD--LVTHSDPPRAHAHSLVGKQCSELGICAVSVGPK-DMTAQFNNLGVLHVTKKNM 146
Query: 236 EAAIERKIQL--------GIDPYNAGSLKNHQE-----VDMNVVRICFQASYRDQQGQMR 282
+ +K+Q G+ L+ + +D+++VR+ F A R G
Sbjct: 147 MGTMIQKLQRQRLRSRPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAFLRASDGSFS 206
Query: 283 R-MDPVLSEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKEDISVVF---S 338
+ PV+S+P++D KS S L+I R++K +G GG+E+YLLCDKVQK+DI V F
Sbjct: 207 LPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDD 266
Query: 339 RASWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPFTYL 398
W+ DFS DVH+Q AIVF+TPPY ++I PVTV + L+R G S+ FTY
Sbjct: 267 ENGWQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDVSDSKQFTYY 326
Query: 399 PRDHDSYGVDKKRKRGMP 416
P D V +KR++ +P
Sbjct: 327 PLVEDKEEVQRKRRKALP 344
>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 44.7 bits (104), Expect = 2e-04
Identities = 75/304 (24%), Positives = 115/304 (37%), Gaps = 55/304 (18%)
Query: 117 PAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLR 176
P G + +V+ + + R RY EG S GS+ + P ++L G
Sbjct: 198 PVKSEGKELKIVVQPETQHRA---RYLTEG-SRGSV----KDRTQQGFPTVKLE---GHN 246
Query: 177 EVEVTACLVWKDWPHRVHPHS------LVGKDCTD---------GICRVRLRPHVSPRHS 221
E V V D RV PH + G++ T + V L P + +
Sbjct: 247 EPVVLQVFVGND-SGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLA 305
Query: 222 FNNLGIQCVRKKEIEAAIERKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQM 281
+ +GI +R ++EA I GI AGS K R+ F+ + + G
Sbjct: 306 VDCVGILKLRNADVEARI------GI----AGSKKKSTRA-----RLVFRVNIMRKDGST 350
Query: 282 RRMDPVLSEPVYDKKSTNTSELRICRINKESGPCT-GGEELYLLCDKVQKEDISVVFSRA 340
+ S P+ + E+ + K C+ GEE L K + V+F
Sbjct: 351 LTLQTP-SSPILCTQPAGVPEI----LKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQEN 405
Query: 341 -----SWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPF 395
SW+ A+ H+ IV K PPY D I PV+V +++ G + PF
Sbjct: 406 VSDENSWKSEAEIDMELFHQNHLIV-KVPPYHDQHITLPVSVGIYVV-TNAGRSHDVQPF 463
Query: 396 TYLP 399
TY P
Sbjct: 464 TYTP 467
>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
sapiens]
Length = 1531
Score = 44.7 bits (104), Expect = 2e-04
Identities = 75/304 (24%), Positives = 115/304 (37%), Gaps = 55/304 (18%)
Query: 117 PAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLR 176
P G + +V+ + + R RY EG S GS+ + P ++L G
Sbjct: 274 PVKSEGKELKIVVQPETQHRA---RYLTEG-SRGSV----KDRTQQGFPTVKLE---GHN 322
Query: 177 EVEVTACLVWKDWPHRVHPHS------LVGKDCTD---------GICRVRLRPHVSPRHS 221
E V V D RV PH + G++ T + V L P + +
Sbjct: 323 EPVVLQVFVGND-SGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLA 381
Query: 222 FNNLGIQCVRKKEIEAAIERKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQM 281
+ +GI +R ++EA I GI AGS K R+ F+ + + G
Sbjct: 382 VDCVGILKLRNADVEARI------GI----AGSKKKSTRA-----RLVFRVNIMRKDGST 426
Query: 282 RRMDPVLSEPVYDKKSTNTSELRICRINKESGPCT-GGEELYLLCDKVQKEDISVVFSRA 340
+ S P+ + E+ + K C+ GEE L K + V+F
Sbjct: 427 LTLQTP-SSPILCTQPAGVPEI----LKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQEN 481
Query: 341 -----SWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPF 395
SW+ A+ H+ IV K PPY D I PV+V +++ G + PF
Sbjct: 482 VSDENSWKSEAEIDMELFHQNHLIV-KVPPYHDQHITLPVSVGIYVV-TNAGRSHDVQPF 539
Query: 396 TYLP 399
TY P
Sbjct: 540 TYTP 543
>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
sapiens]
Length = 1548
Score = 44.7 bits (104), Expect = 2e-04
Identities = 75/304 (24%), Positives = 115/304 (37%), Gaps = 55/304 (18%)
Query: 117 PAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLR 176
P G + +V+ + + R RY EG S GS+ + P ++L G
Sbjct: 292 PVKSEGKELKIVVQPETQHRA---RYLTEG-SRGSV----KDRTQQGFPTVKLE---GHN 340
Query: 177 EVEVTACLVWKDWPHRVHPHS------LVGKDCTD---------GICRVRLRPHVSPRHS 221
E V V D RV PH + G++ T + V L P + +
Sbjct: 341 EPVVLQVFVGND-SGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLA 399
Query: 222 FNNLGIQCVRKKEIEAAIERKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQM 281
+ +GI +R ++EA I GI AGS K R+ F+ + + G
Sbjct: 400 VDCVGILKLRNADVEARI------GI----AGSKKKSTRA-----RLVFRVNIMRKDGST 444
Query: 282 RRMDPVLSEPVYDKKSTNTSELRICRINKESGPCT-GGEELYLLCDKVQKEDISVVFSRA 340
+ S P+ + E+ + K C+ GEE L K + V+F
Sbjct: 445 LTLQTP-SSPILCTQPAGVPEI----LKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQEN 499
Query: 341 -----SWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPF 395
SW+ A+ H+ IV K PPY D I PV+V +++ G + PF
Sbjct: 500 VSDENSWKSEAEIDMELFHQNHLIV-KVPPYHDQHITLPVSVGIYVV-TNAGRSHDVQPF 557
Query: 396 TYLP 399
TY P
Sbjct: 558 TYTP 561
>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
sapiens]
Length = 1549
Score = 44.7 bits (104), Expect = 2e-04
Identities = 75/304 (24%), Positives = 115/304 (37%), Gaps = 55/304 (18%)
Query: 117 PAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLR 176
P G + +V+ + + R RY EG S GS+ + P ++L G
Sbjct: 292 PVKSEGKELKIVVQPETQHRA---RYLTEG-SRGSV----KDRTQQGFPTVKLE---GHN 340
Query: 177 EVEVTACLVWKDWPHRVHPHS------LVGKDCTD---------GICRVRLRPHVSPRHS 221
E V V D RV PH + G++ T + V L P + +
Sbjct: 341 EPVVLQVFVGND-SGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLA 399
Query: 222 FNNLGIQCVRKKEIEAAIERKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQM 281
+ +GI +R ++EA I GI AGS K R+ F+ + + G
Sbjct: 400 VDCVGILKLRNADVEARI------GI----AGSKKKSTRA-----RLVFRVNIMRKDGST 444
Query: 282 RRMDPVLSEPVYDKKSTNTSELRICRINKESGPCT-GGEELYLLCDKVQKEDISVVFSRA 340
+ S P+ + E+ + K C+ GEE L K + V+F
Sbjct: 445 LTLQTP-SSPILCTQPAGVPEI----LKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQEN 499
Query: 341 -----SWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPF 395
SW+ A+ H+ IV K PPY D I PV+V +++ G + PF
Sbjct: 500 VSDENSWKSEAEIDMELFHQNHLIV-KVPPYHDQHITLPVSVGIYVV-TNAGRSHDVQPF 557
Query: 396 TYLP 399
TY P
Sbjct: 558 TYTP 561
>gi|27886524 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 44.7 bits (104), Expect = 2e-04
Identities = 75/304 (24%), Positives = 115/304 (37%), Gaps = 55/304 (18%)
Query: 117 PAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLR 176
P G + +V+ + + R RY EG S GS+ + P ++L G
Sbjct: 198 PVKSEGKELKIVVQPETQHRA---RYLTEG-SRGSV----KDRTQQGFPTVKLE---GHN 246
Query: 177 EVEVTACLVWKDWPHRVHPHS------LVGKDCTD---------GICRVRLRPHVSPRHS 221
E V V D RV PH + G++ T + V L P + +
Sbjct: 247 EPVVLQVFVGND-SGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLA 305
Query: 222 FNNLGIQCVRKKEIEAAIERKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGQM 281
+ +GI +R ++EA I GI AGS K R+ F+ + + G
Sbjct: 306 VDCVGILKLRNADVEARI------GI----AGSKKKSTRA-----RLVFRVNIMRKDGST 350
Query: 282 RRMDPVLSEPVYDKKSTNTSELRICRINKESGPCT-GGEELYLLCDKVQKEDISVVFSRA 340
+ S P+ + E+ + K C+ GEE L K + V+F
Sbjct: 351 LTLQTP-SSPILCTQPAGVPEI----LKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQEN 405
Query: 341 -----SWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSEPLPF 395
SW+ A+ H+ IV K PPY D I PV+V +++ G + PF
Sbjct: 406 VSDENSWKSEAEIDMELFHQNHLIV-KVPPYHDQHITLPVSVGIYVV-TNAGRSHDVQPF 463
Query: 396 TYLP 399
TY P
Sbjct: 464 TYTP 467
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 42.4 bits (98), Expect = 0.001
Identities = 36/112 (32%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 6 PASGPSVPTGRAMPSRRVARPPAAPELGA----LGSPDLSSLSLAVSRSTDELEIIDEYI 61
P GP+ P A + RPP P+ A L LS+L L + TDE +
Sbjct: 28 PGPGPAPPPEGAQEAAPAPRPPPEPDDAAAALRLALDQLSALGLGGAGDTDEEGAAGDGA 87
Query: 62 KENGFGLDGGQP-------GPGEGLPRLVSRGAASLSTVTLGPVAPPATPPP 106
G G DGG GP G P ++ A S L P A P PPP
Sbjct: 88 AAAG-GADGGAAPEPVPPDGPEAGAPPTLAPAVAPGSLPLLDPNASPPPPPP 138
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 42.0 bits (97), Expect = 0.002
Identities = 53/173 (30%), Positives = 68/173 (39%), Gaps = 48/173 (27%)
Query: 5 GPASGPSVPTGRAMPSRRVARPPAAPELGA-LGSPDLSSLSLAVSRSTDELEIIDEYIKE 63
GP P P G + ++A PA LGA +G PD S L DE
Sbjct: 16 GPDPEPGGPDGPG--AAQLAPGPAELRLGAPVGGPDPQSPGL------------DE--PA 59
Query: 64 NGFGLDGG---QPGPGEGLPRLVSRGAASLSTVTLGPVAP-PATPPPWGCPLGRLVSP-A 118
G DGG GP GL GP P P+ PPP P G+L SP A
Sbjct: 60 PGAAADGGARWSAGPAPGLEG--------------GPRDPGPSAPPPRSGPRGQLASPDA 105
Query: 119 PGPGPQ---------PHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASK 162
PGPGP+ P TE+P++ G C + + G SS+ ++
Sbjct: 106 PGPGPRSEAPLPELDPLFSWTEEPEECGPA---SCPESAPFRLQGSSSSHRAR 155
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 40.8 bits (94), Expect = 0.003
Identities = 44/151 (29%), Positives = 59/151 (39%), Gaps = 33/151 (21%)
Query: 5 GPASGPSVPTGRA--MPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTDELEIIDEYIK 62
GP P +P G A MP RPPA + G +G P +S A S
Sbjct: 1295 GPVGTPDIPLGTAPSMPGHNPMRPPAFLQQGMMG-PHHRMMSPAQSTM------------ 1341
Query: 63 ENGFGLDGGQPGPGEGLPRLVSRGAASLSTV---TLGPVAPPATPPPWGCPLGRLVSPAP 119
PG+ P L+S AA++ + GP P P G P G ++S
Sbjct: 1342 ------------PGQ--PTLMSNPAAAVGMIPGKDRGPAGLYTHPGPVGSP-GMMMSMQG 1386
Query: 120 GPGPQPHLVITEQPKQRGMRFRYECEGRSAG 150
GPQ +++I Q + RGM G S G
Sbjct: 1387 MMGPQQNIMIPPQMRPRGMAADVGMGGFSQG 1417
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 40.0 bits (92), Expect = 0.006
Identities = 48/170 (28%), Positives = 61/170 (35%), Gaps = 20/170 (11%)
Query: 10 PSVPTGRAMPSRRVARPPAAPEL-GALGSPDLSSLSLAVSRSTDELEIIDEYIKENGFGL 68
P P P R A P A+P+ A+ SP S LS + D Y E F
Sbjct: 779 PPAPPPPPPPPRAPADPAASPDPPSAVASPG-SGLSSPGPKPGDS-----GYETETPFSP 832
Query: 69 DGGQPGPGEGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCPLGRLVSPAPGPGPQPHLV 128
+G PG G V R A G PP P P P PGP +P V
Sbjct: 833 EGAFPGGGAAEEEGVPRPRAPPEPPDPGAPRPPPDPGP---------LPLPGPREKPTFV 883
Query: 129 ITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLREV 178
+ +Q M R + ++LGE A +T P R G +V
Sbjct: 884 VQVSTEQLLMSLREDV----TRNLLGEKGATARETGPRKAGRGPGNREKV 929
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 39.3 bits (90), Expect = 0.010
Identities = 44/171 (25%), Positives = 61/171 (35%), Gaps = 24/171 (14%)
Query: 6 PASGP---SVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTDELEIIDEYIK 62
P +GP S P G PP AP G P L L A S T E +++E
Sbjct: 1409 PLAGPKDTSTPDG----------PPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPP 1458
Query: 63 ENGFGLDGGQPGPG----------EGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCPLG 112
QP P P LV+ +S L P PPA P P P
Sbjct: 1459 PTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSP-PPPPP 1517
Query: 113 RLVSPAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKT 163
+P P +P E P+ R + + + ++ GE+ EA ++
Sbjct: 1518 PAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEEAGES 1568
Score = 30.4 bits (67), Expect = 4.7
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 25/90 (27%)
Query: 62 KENGFGLDGGQ---PGPGEGL--PRLVSRG-----AASLS---TVTLGPVAPPATPPPWG 108
K +G G GGQ PG +GL P+ +G A LS + + GP PP+ PPP G
Sbjct: 431 KASGAGGAGGQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPG 490
Query: 109 CPLGRLVSP------------APGPGPQPH 126
+ SP P PGP H
Sbjct: 491 LATCQSYSPDQLQGQLYGVQGEPYPGPAAH 520
Score = 29.6 bits (65), Expect = 7.9
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 452 GPFLPPSALLPDPDFFSGTVSLPGLEPPGGPDLLDDGFAYDPTAPTLFTMLDLLPPAPPH 511
GP L P+A +P P G S P P L + P APT PP PP
Sbjct: 1421 GPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPT--PQPQPPPPPPPP 1478
Query: 512 ASAVVCSGGAGAVVGETPGPEPL 534
A+ A +P P PL
Sbjct: 1479 QPALPSPPPLVAPTPSSPPPPPL 1501
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.5 bits (88), Expect = 0.017
Identities = 44/168 (26%), Positives = 55/168 (32%), Gaps = 29/168 (17%)
Query: 398 LPRDHDSYGVDKKRKRGMPDVLGELNSSDPHGIESKRRKKKPAILDHFLPNHGSG----- 452
LPR +D R + D SSDP I+ R P+I + S
Sbjct: 96 LPRPQSPSDLDSLDGRSLNDD----GSSDPRDIDQDNRSTSPSIYSPGSVENDSDSSSGL 151
Query: 453 ------PFLPPSALLPDPDFFSGTVSLPGLEPPGGPDLLDDGFAYDPTAPTLFTMLDLLP 506
P+ PP P P T P P + G+ + P P M P
Sbjct: 152 SQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGY-HAPMEPPTSRMFQAPP 210
Query: 507 PAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQAPGPGDGGTASLVG 554
APP + GG G V+ P GP GG AS VG
Sbjct: 211 GAPP-PHPQLYPGGTGGVLSGPP------------MGPKGGGAASSVG 245
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.5 bits (88), Expect = 0.017
Identities = 44/168 (26%), Positives = 55/168 (32%), Gaps = 29/168 (17%)
Query: 398 LPRDHDSYGVDKKRKRGMPDVLGELNSSDPHGIESKRRKKKPAILDHFLPNHGSG----- 452
LPR +D R + D SSDP I+ R P+I + S
Sbjct: 96 LPRPQSPSDLDSLDGRSLNDD----GSSDPRDIDQDNRSTSPSIYSPGSVENDSDSSSGL 151
Query: 453 ------PFLPPSALLPDPDFFSGTVSLPGLEPPGGPDLLDDGFAYDPTAPTLFTMLDLLP 506
P+ PP P P T P P + G+ + P P M P
Sbjct: 152 SQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGY-HAPMEPPTSRMFQAPP 210
Query: 507 PAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQAPGPGDGGTASLVG 554
APP + GG G V+ P GP GG AS VG
Sbjct: 211 GAPP-PHPQLYPGGTGGVLSGPP------------MGPKGGGAASSVG 245
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 38.1 bits (87), Expect = 0.022
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 447 PNHGSGPFLPPSALLPDPDFFSGTVSLPGLEPPGGPDLLDDGFAYDPTAPTLFTMLDLLP 506
P GS PPS P P P + PP P L + ++P++ T D +P
Sbjct: 157 PPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIPTPPDFIP 216
Query: 507 PAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQAPGPGDGGTASLVGSNMFP 559
PAPP A P P P+ AP P + VG+ +FP
Sbjct: 217 PAPPLAFL-------------APPPPPV-----PAPAPPAPASPHTVGTRLFP 251
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 38.1 bits (87), Expect = 0.022
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 447 PNHGSGPFLPPSALLPDPDFFSGTVSLPGLEPPGGPDLLDDGFAYDPTAPTLFTMLDLLP 506
P GS PPS P P P + PP P L + ++P++ T D +P
Sbjct: 157 PPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIPTPPDFIP 216
Query: 507 PAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQAPGPGDGGTASLVGSNMFP 559
PAPP A P P P+ AP P + VG+ +FP
Sbjct: 217 PAPPLAFL-------------APPPPPV-----PAPAPPAPASPHTVGTRLFP 251
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 38.1 bits (87), Expect = 0.022
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 447 PNHGSGPFLPPSALLPDPDFFSGTVSLPGLEPPGGPDLLDDGFAYDPTAPTLFTMLDLLP 506
P GS PPS P P P + PP P L + ++P++ T D +P
Sbjct: 157 PPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIPTPPDFIP 216
Query: 507 PAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQAPGPGDGGTASLVGSNMFP 559
PAPP A P P P+ AP P + VG+ +FP
Sbjct: 217 PAPPLAFL-------------APPPPPV-----PAPAPPAPASPHTVGTRLFP 251
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 37.4 bits (85), Expect = 0.038
Identities = 42/169 (24%), Positives = 62/169 (36%), Gaps = 38/169 (22%)
Query: 3 RSGPASGPSVPTGRAMPSRRV------------ARPPAAPELGALGSPDLSSLSLAVSRS 50
R P P P+GR+ PS + ARP P G + +P + + A +
Sbjct: 1114 RPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLT 1173
Query: 51 TDELEIIDEYIKENGFGLDGGQPGPGEGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCP 110
+ E K + F LP + AA +L P A P
Sbjct: 1174 PESQSKTSETSKGSTF------------LPEPLKPQAAFPPQSSLPPPAQRLQEP----- 1216
Query: 111 LGRLVSPAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILGESSTE 159
L + +P P GPQP+L QP R RS+ S+ E+S++
Sbjct: 1217 LVPVAAPMPQSGPQPNLETPPQPPPR---------SRSSHSLPSEASSQ 1256
>gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens]
Length = 669
Score = 37.4 bits (85), Expect = 0.038
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 66 FGLDGGQPGPGEGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCPLGRLVSPAPGPGPQP 125
+G GQP P + LP + R P PP PPP G P P PGP
Sbjct: 303 YGTPDGQPQPTQPLPTVTPRRPGRPDH---RPPRPPQPPPPGGKP-----ERPPKPGPPV 354
Query: 126 HLVITEQPKQRGMRFRYECEG 146
TE+P Q G C+G
Sbjct: 355 QPRATERPDQYGPNI---CDG 372
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 37.4 bits (85), Expect = 0.038
Identities = 50/156 (32%), Positives = 58/156 (37%), Gaps = 44/156 (28%)
Query: 438 KPAILDHFLPNHGSGPFLPPSALLPDPDFFSGTVSLPGLEPPGGPDLLDDGFAYDPTAPT 497
KP + LP P PP LLP + PGL+ D A +P AP
Sbjct: 249 KPQLAPLHLP-----PIPPPLPLLPPCGY-------PGLKAEPASPAQD---AQEPPAPP 293
Query: 498 LFTMLDLLPPAPPHASAVVCSGGAGAVV---------GETPGPEPLTLDSYQAPGPGDGG 548
PP PP+AS CS A ETP P P S+QAP G
Sbjct: 294 --------PPLPPYAS---CSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGA 342
Query: 549 TA-----SLVGSNMF---PNHYREAAFGGGLLSPGP 576
A + GS F H R A GGG L+P P
Sbjct: 343 QALPAPPAPPGSQPFLQKKRHGRPGA-GGGKLNPPP 377
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 37.0 bits (84), Expect = 0.050
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 72 QPGPGEGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCPLGRLVSPAPGPGP 123
QPGP E + R VS + GP PP PPP G P P PG P
Sbjct: 145 QPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPP------PPPGLPP 190
Score = 35.0 bits (79), Expect = 0.19
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 42/153 (27%)
Query: 423 NSSDPHGIESKRRKKKPAILDHF--LPNHGSGPFLPPSALLPDPDFFSGTVSLPGLEPPG 480
N P +E ++R++ P +H ++ GP PP+ P P PG PP
Sbjct: 131 NGPSPEEVEQQKRQQ-PGPSEHIERRVSNAGGPPAPPAGGPPPP---------PGPPPPP 180
Query: 481 GPDLLDDGFAYDPTAPTLFTMLDLLPPAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQ 540
GP PP P + + GAG G P P L + Q
Sbjct: 181 GPPP---------------------PPGLPPSGVPAAAHGAGG--GPPPAP---PLPAAQ 214
Query: 541 APGPGDGG----TASLVGSNMFPNHYREAAFGG 569
PG G G A++ G+ + +E A GG
Sbjct: 215 GPGGGGAGAPGLAAAIAGAKLRKVSKQEEASGG 247
>gi|154355004 strawberry notch homolog 2 isoform 2 [Homo sapiens]
Length = 1309
Score = 36.6 bits (83), Expect = 0.065
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 454 FLPPSALLPDPDFFSGTVSL-----PGLEPPGGPDLLDDGFAYDPTA------PTLFTML 502
+ PP+ P P FS L PG+ P G PD D A L ML
Sbjct: 1204 YSPPAEAFPPPPHFSFPAPLSLDAGPGVVPLGTPDAQADPAALAHQGCDINFKEVLEDML 1263
Query: 503 DLLPPAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQAPGPG 545
L PP A+ GAG G GPE ++ + P PG
Sbjct: 1264 RSLHAGPPSEGALGEGAGAGGAAG--GGPERQSVIQFSPPFPG 1304
>gi|154355002 strawberry notch homolog 2 isoform 1 [Homo sapiens]
Length = 1366
Score = 36.6 bits (83), Expect = 0.065
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 454 FLPPSALLPDPDFFSGTVSL-----PGLEPPGGPDLLDDGFAYDPTA------PTLFTML 502
+ PP+ P P FS L PG+ P G PD D A L ML
Sbjct: 1261 YSPPAEAFPPPPHFSFPAPLSLDAGPGVVPLGTPDAQADPAALAHQGCDINFKEVLEDML 1320
Query: 503 DLLPPAPPHASAVVCSGGAGAVVGETPGPEPLTLDSYQAPGPG 545
L PP A+ GAG G GPE ++ + P PG
Sbjct: 1321 RSLHAGPPSEGALGEGAGAGGAAG--GGPERQSVIQFSPPFPG 1361
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 36.6 bits (83), Expect = 0.065
Identities = 36/140 (25%), Positives = 50/140 (35%), Gaps = 11/140 (7%)
Query: 6 PASGPSVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTDELEIIDEYIKENG 65
P G + P + P+ A PP+ A SP + + A + + + + K
Sbjct: 1159 PKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAP 1218
Query: 66 FGLDGGQPGPGEGLPRLVSRGAASLSTVTL-GPVAPPATPPPWGCPL----------GRL 114
P P GL +GA + T P PATPPP G P G L
Sbjct: 1219 TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGL 1278
Query: 115 VSPAPGPGPQPHLVITEQPK 134
+P P P +V PK
Sbjct: 1279 ATPPHKGAPNPAVVTPPSPK 1298
Score = 34.3 bits (77), Expect = 0.32
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 17/144 (11%)
Query: 6 PASGPSVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTDELEIIDEYIKENG 65
P GP+ P+ + P+ A PP+ A SP + AV+ + + +
Sbjct: 973 PKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGA 1032
Query: 66 FGLDGGQPGPGEGLPRL--VSRGAASLSTVTL-------------GPVAPPATPPPWGCP 110
P +G P + +GA + TL G PPA PP P
Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPP--SP 1090
Query: 111 LGRLVSPAPGPGPQPHLVITEQPK 134
G +P+P P P PK
Sbjct: 1091 KGGPATPSPKGAPMPPAATPPSPK 1114
Score = 33.5 bits (75), Expect = 0.55
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 9 GPSVPTGRAMPSRRVARP---------PAAPELG-ALGSPDLSSLSLAVSRSTDELEIID 58
GP+ P+ + P+ A P P +P+ G A+ SP S AV + +
Sbjct: 1359 GPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPAT 1418
Query: 59 EYIKENGFGLDGGQPGPGEGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCP-LGRLVSP 117
+E P G+ P V+ + + T P PATP G P L + P
Sbjct: 1419 PVTREGA-----ATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPP 1473
Query: 118 APGPGPQPHLVIT-EQPKQ 135
+P P P V T PK+
Sbjct: 1474 SPKEPPAPKQVATSSSPKK 1492
Score = 32.7 bits (73), Expect = 0.94
Identities = 34/133 (25%), Positives = 46/133 (34%), Gaps = 26/133 (19%)
Query: 6 PASGPSVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTDELEIIDEYIKENG 65
P GP+ P + P+ A PP+ G L +P + ++
Sbjct: 1251 PKGGPATPPPKGAPTPPAATPPSLK--GGLATPP--------HKGAPNPAVVTP------ 1294
Query: 66 FGLDGGQPGPGEGLPRLVSRGAASLSTVTL-GPVAPPATPPPWGCPLGRLVSPAPGPGPQ 124
P P G +GA + T P P TPPP G P V+P P P
Sbjct: 1295 -------PSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTP-PSPKGT 1346
Query: 125 PHLVITEQPKQRG 137
P L T P +G
Sbjct: 1347 PTLPAT-TPSSKG 1358
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 73 PGPGEGLPRLVSRGAASLSTVTLGPVAPPATPPPWGCPLGRLVSPAPGPGPQPHLVITEQ 132
P P EG + A +LS + P ATP P G P SP+P P P
Sbjct: 894 PFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIP----ASPSPKGAPTPPAATPPS 949
Query: 133 PK 134
PK
Sbjct: 950 PK 951
Score = 32.0 bits (71), Expect = 1.6
Identities = 34/140 (24%), Positives = 45/140 (32%), Gaps = 34/140 (24%)
Query: 6 PASGPSVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTDELEIIDEYIKENG 65
P GP+ P+ + P+ A PP+ A SP + + A +
Sbjct: 1067 PKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAAT----------------- 1109
Query: 66 FGLDGGQPGPGEGLPRLVSRGAASLSTVTL-GPVAPPATPPPWGCPL----------GRL 114
P P GL +GA + T P ATPPP G P G L
Sbjct: 1110 ------PPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGL 1163
Query: 115 VSPAPGPGPQPHLVITEQPK 134
+P P P PK
Sbjct: 1164 ATPPPKGAPTTPAATPPSPK 1183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,243,855
Number of Sequences: 37866
Number of extensions: 1876615
Number of successful extensions: 9873
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 8784
Number of HSP's gapped (non-prelim): 1382
length of query: 579
length of database: 18,247,518
effective HSP length: 108
effective length of query: 471
effective length of database: 14,157,990
effective search space: 6668413290
effective search space used: 6668413290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.