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Search of human proteins with 34577105
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34577105 RNA-binding region containing protein 1 isoform b
[Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34577105 RNA-binding region containing protein 1 isoform b [H... 249 3e-67
gi|34577107 RNA-binding region containing protein 1 isoform a [H... 249 3e-67
gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens] 186 4e-48
gi|23308561 RNA binding motif protein 24 isoform 2 [Homo sapiens] 82 1e-16
gi|221139804 RNA binding motif protein 24 isoform 3 [Homo sapiens] 79 1e-15
gi|20373175 musashi 2 isoform a [Homo sapiens] 70 5e-13
gi|25121993 musashi 2 isoform b [Homo sapiens] 69 1e-12
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 67 2e-12
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 67 2e-12
gi|4505255 musashi 1 [Homo sapiens] 66 5e-12
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 66 7e-12
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 66 7e-12
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 64 2e-11
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 64 4e-11
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 63 6e-11
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 62 8e-11
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 62 8e-11
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 62 1e-10
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 62 1e-10
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 61 2e-10
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 61 2e-10
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 60 5e-10
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 59 9e-10
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 59 1e-09
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 59 1e-09
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 59 1e-09
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 57 3e-09
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 57 3e-09
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 57 3e-09
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 57 3e-09
>gi|34577105 RNA-binding region containing protein 1 isoform b [Homo
sapiens]
Length = 121
Score = 249 bits (637), Expect = 3e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI 60
MLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI
Sbjct: 1 MLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI 60
Query: 61 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT 120
EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT
Sbjct: 61 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT 120
Query: 121 G 121
G
Sbjct: 121 G 121
>gi|34577107 RNA-binding region containing protein 1 isoform a [Homo
sapiens]
Length = 239
Score = 249 bits (637), Expect = 3e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI 60
MLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI
Sbjct: 1 MLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI 60
Query: 61 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT 120
EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT
Sbjct: 61 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT 120
Query: 121 G 121
G
Sbjct: 121 G 121
>gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens]
Length = 236
Score = 186 bits (472), Expect = 4e-48
Identities = 90/98 (91%), Positives = 94/98 (95%)
Query: 24 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 83
MH +QKDTT+TKIFVGGLPYHTTDASLRKYFE FG+IEEAVVITDRQTGKSRGYGFVTMA
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 84 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTG 121
DRAAAERACKDPNPIIDGRKANVNLAYLGAKPR +Q G
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPG 98
>gi|23308561 RNA binding motif protein 24 isoform 2 [Homo sapiens]
Length = 191
Score = 82.0 bits (201), Expect = 1e-16
Identities = 39/42 (92%), Positives = 40/42 (95%)
Query: 80 VTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTG 121
VTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR +Q G
Sbjct: 12 VTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPG 53
>gi|221139804 RNA binding motif protein 24 isoform 3 [Homo sapiens]
Length = 178
Score = 78.6 bits (192), Expect = 1e-15
Identities = 37/40 (92%), Positives = 38/40 (95%)
Query: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTG 121
MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR +Q G
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPG 40
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 69.7 bits (169), Expect = 5e-13
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 22 GAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 81
G+ + SQ D K+F+GGL + T+ SLR YF FG+I E +V+ D T +SRG+GFVT
Sbjct: 11 GSANDSQHDPG--KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
Query: 82 MADRAAAERACKDPNPIIDGRKANVNLAY 110
AD A+ ++ P+ +D + + +A+
Sbjct: 69 FADPASVDKVLGQPHHELDSKTIDPKVAF 97
Score = 60.8 bits (146), Expect = 2e-10
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 10 PSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 69
P FPR A P + T KIFVGGL +T +++YFE FG +E+A+++ D+
Sbjct: 93 PKVAFPRR-AQPKMV------TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDK 145
Query: 70 QTGKSRGYGFVTMADRAAAERACK 93
T + RG+GFVT + E+ C+
Sbjct: 146 TTNRHRGFGFVTFENEDVVEKVCE 169
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 68.6 bits (166), Expect = 1e-12
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 93
+K+F+GGL + T+ SLR YF FG+I E +V+ D T +SRG+GFVT AD A+ ++
Sbjct: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
Query: 94 DPNPIIDGRKANVNLAY 110
P+ +D + + +A+
Sbjct: 77 QPHHELDSKTIDPKVAF 93
Score = 60.8 bits (146), Expect = 2e-10
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 10 PSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 69
P FPR A P + T KIFVGGL +T +++YFE FG +E+A+++ D+
Sbjct: 89 PKVAFPRR-AQPKMV------TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDK 141
Query: 70 QTGKSRGYGFVTMADRAAAERACK 93
T + RG+GFVT + E+ C+
Sbjct: 142 TTNRHRGFGFVTFENEDVVEKVCE 165
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 67.4 bits (163), Expect = 2e-12
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 LQPAPCAPSAGFP-RPLAAPGAMHGSQKDTTFT-KIFVGGLPYHTTDASLRKYFEGFGDI 60
+ P PC P P R G G + D + + KIFVGG+P++ + LR+YF+ FG +
Sbjct: 80 IDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVV 139
Query: 61 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 109
E V+I D + + RG+GF+T D + ++A I G+K V A
Sbjct: 140 TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
Score = 58.5 bits (140), Expect = 1e-09
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+FVGGL + TT +LR YF +G++ + V++ D+ T +SRG+GFV D
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 95 PNPIIDGRKANVNLAYLGAKPRSLQ 119
+DGR N+ PR +Q
Sbjct: 71 RPHTLDGR----NIDPKPCTPRGMQ 91
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 67.4 bits (163), Expect = 2e-12
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 LQPAPCAPSAGFP-RPLAAPGAMHGSQKDTTFT-KIFVGGLPYHTTDASLRKYFEGFGDI 60
+ P PC P P R G G + D + + KIFVGG+P++ + LR+YF+ FG +
Sbjct: 80 IDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVV 139
Query: 61 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 109
E V+I D + + RG+GF+T D + ++A I G+K V A
Sbjct: 140 TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
Score = 58.5 bits (140), Expect = 1e-09
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+FVGGL + TT +LR YF +G++ + V++ D+ T +SRG+GFV D
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 95 PNPIIDGRKANVNLAYLGAKPRSLQ 119
+DGR N+ PR +Q
Sbjct: 71 RPHTLDGR----NIDPKPCTPRGMQ 91
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 66.2 bits (160), Expect = 5e-12
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 15 PRP-LAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGK 73
P+P LA+P + H K+F+GGL + TT LR+YF FG+++E +V+ D T +
Sbjct: 6 PQPGLASPDSPHDP------CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR 59
Query: 74 SRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAY 110
SRG+GFVT D+A ++ +D + + +A+
Sbjct: 60 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 96
Score = 61.2 bits (147), Expect = 2e-10
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 10 PSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 69
P FPR A P + T KIFVGGL +TT +++YFE FG +++A+++ D+
Sbjct: 92 PKVAFPRR-AQPKMV------TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDK 144
Query: 70 QTGKSRGYGFVTMADRAAAERACK 93
T + RG+GFVT E+ C+
Sbjct: 145 TTNRHRGFGFVTFESEDIVEKVCE 168
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 65.9 bits (159), Expect = 7e-12
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
T K+FVGG+ T + LR YFE +G I+ +ITDRQ+GK RG+GFVT D ++
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 92 CKDPNPIIDGRKANVNLAYLGAKPRSLQT 120
I+G A V A + + +Q+
Sbjct: 170 VLQKYHTINGHNAEVRKALSRQEMQEVQS 198
Score = 63.5 bits (153), Expect = 4e-11
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 33 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 92
F K+F+GGL + TT+ SLR Y+E +G + + VV+ D + +SRG+GFVT + A + A
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 93 KDPNPIIDGR 102
IDGR
Sbjct: 80 AARPHSIDGR 89
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 65.9 bits (159), Expect = 7e-12
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
T K+FVGG+ T + LR YFE +G I+ +ITDRQ+GK RG+GFVT D ++
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 92 CKDPNPIIDGRKANVNLAYLGAKPRSLQT 120
I+G A V A + + +Q+
Sbjct: 158 VLQKYHTINGHNAEVRKALSRQEMQEVQS 186
Score = 63.5 bits (153), Expect = 4e-11
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 33 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 92
F K+F+GGL + TT+ SLR Y+E +G + + VV+ D + +SRG+GFVT + A + A
Sbjct: 8 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 67
Query: 93 KDPNPIIDGR 102
IDGR
Sbjct: 68 AARPHSIDGR 77
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 64.3 bits (155), Expect = 2e-11
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 1 MLLQPAPCAPSAGFPRPLAAPGAM-HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGD 59
M ++P P P R G H ++ K+F+GGL + TTD SLR++FE +G
Sbjct: 1 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT 60
Query: 60 IEEAVVITDRQTGKSRGYGFVTMADRAAAERA-CKDPNPIIDGR 102
+ + VV+ D QT +SRG+GFVT + + A C P+ +DGR
Sbjct: 61 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHK-VDGR 103
Score = 61.6 bits (148), Expect = 1e-10
Identities = 32/78 (41%), Positives = 42/78 (53%)
Query: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
T KIFVGG+ T + +LR YFE +G IE V+ DRQ+GK RG+ FVT D ++
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 92 CKDPNPIIDGRKANVNLA 109
I+G V A
Sbjct: 184 VVQKYHTINGHNCEVKKA 201
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 63.5 bits (153), Expect = 4e-11
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+FVGGL ++T + +L +F FG I E VV+ DR+T +SRG+GF+T + A A +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 95 PN-PIIDGRKANVNLAYLGAK 114
N +DGR+ V+ A A+
Sbjct: 67 MNGESLDGRQIRVDHAGKSAR 87
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 62.8 bits (151), Expect = 6e-11
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+FVGGL + T + SL + F +G I E VV+ DR+T +SRG+GFVT + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 PN-PIIDGRKANVNLAYLGAKPRS 117
N +DGR+ V+ A + RS
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRS 90
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 62.4 bits (150), Expect = 8e-11
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+F+GGL + TTD SLR +FE +G + + VV+ D T +SRG+GFVT A + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 95 PNPIIDGR 102
+DGR
Sbjct: 75 TPHKVDGR 82
Score = 58.5 bits (140), Expect = 1e-09
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
T KIFVGG+ T + LR YFE +G IE ++TDR +GK RG+ FVT D + ++
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 92 CKDPNPIIDGRKANVNLA 109
+ G V A
Sbjct: 163 VIQKYHTVKGHNCEVRKA 180
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 62.4 bits (150), Expect = 8e-11
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+F+GGL + TTD SLR +FE +G + + VV+ D T +SRG+GFVT A + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 95 PNPIIDGR 102
+DGR
Sbjct: 75 TPHKVDGR 82
Score = 58.5 bits (140), Expect = 1e-09
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
T KIFVGG+ T + LR YFE +G IE ++TDR +GK RG+ FVT D + ++
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 92 CKDPNPIIDGRKANVNLA 109
+ G V A
Sbjct: 163 VIQKYHTVKGHNCEVRKA 180
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+F+GGL + TTD SLR +FE +G + + VV+ D T +SRG+GFVT A + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 95 PNPIIDGR 102
+DGR
Sbjct: 75 RPHKVDGR 82
Score = 59.3 bits (142), Expect = 7e-10
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
T KIFVGG+ T + LR YFE +G IE ++TDR +GK RG+ FVT D + ++
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 92 CKDPNPIIDGRKANVNLA 109
++G V A
Sbjct: 163 VIQKYHTVNGHNCEVRKA 180
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+F+GGL + TTD SLR +FE +G + + VV+ D T +SRG+GFVT A + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 95 PNPIIDGR 102
+DGR
Sbjct: 75 RPHKVDGR 82
Score = 59.3 bits (142), Expect = 7e-10
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
T KIFVGG+ T + LR YFE +G IE ++TDR +GK RG+ FVT D + ++
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 92 CKDPNPIIDGRKANVNLA 109
++G V A
Sbjct: 163 VIQKYHTVNGHNCEVRKA 180
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 61.2 bits (147), Expect = 2e-10
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 6 APCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV 65
A AP +G A ++ S+ + K+FVGGL + T+ L+ YF FG++ + +
Sbjct: 43 ATAAPPSGNQNG-AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 66 ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
D TG+SRG+GF+ D A+ E+ +DGR
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR 138
Score = 50.1 bits (118), Expect = 4e-07
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 27 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 86
+ K KIFVGGL T+ +R+YF FG+IE + D + K RG+ F+T +
Sbjct: 147 AMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEE 206
Query: 87 AAERACKDPNPIIDGRKANVNLA 109
++ + + G K + +A
Sbjct: 207 PVKKVLEKKFHTVSGSKCEIKVA 229
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 61.2 bits (147), Expect = 2e-10
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 6 APCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV 65
A AP +G A ++ S+ + K+FVGGL + T+ L+ YF FG++ + +
Sbjct: 43 ATAAPPSGNQNG-AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 66 ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
D TG+SRG+GF+ D A+ E+ +DGR
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR 138
Score = 50.1 bits (118), Expect = 4e-07
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 27 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 86
+ K KIFVGGL T+ +R+YF FG+IE + D + K RG+ F+T +
Sbjct: 147 AMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEE 206
Query: 87 AAERACKDPNPIIDGRKANVNLA 109
++ + + G K + +A
Sbjct: 207 PVKKVLEKKFHTVSGSKCEIKVA 229
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 59.7 bits (143), Expect = 5e-10
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 2 LLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIE 61
LLQP P + P P PG KD K+FVG +P H + L+ FE FG I
Sbjct: 16 LLQPRPSPVGSSGPEP---PGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIY 72
Query: 62 EAVVITDRQTGKSRGYGFVTMADRAAAERA 91
E V+ D TG +G F+T R +A +A
Sbjct: 73 ELTVLKDPYTGMHKGCAFLTYCARDSAIKA 102
Score = 42.0 bits (97), Expect = 1e-04
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 7 PCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVI 66
P A S P PL G + +F+ LP D L + F FG+I + V
Sbjct: 377 PIAHSVPQPPPLLQQQQREGPEG----CNLFIYHLPQEFGDTELTQMFLPFGNIISSKVF 432
Query: 67 TDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 103
DR T +S+ +GFV+ + A+A+ A + N G K
Sbjct: 433 MDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 469
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
K+FVG L ++ + + F+ FG I+E V+ G S+G FV + A+ A
Sbjct: 135 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAA 190
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 58.9 bits (141), Expect = 9e-10
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 19 AAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYG 78
A PGA H K K+FVGGL + L ++F FG +E+A +I D+Q+GK RG+G
Sbjct: 89 ARPGA-HAKVK-----KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFG 142
Query: 79 FVTMADRAAAERACKDPNPIIDGRKANVNLA 109
FV + AA++A I G + V A
Sbjct: 143 FVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Score = 56.6 bits (135), Expect = 4e-09
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 29 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 88
+++ K+F+GGL T+++ LR +FE FG + + VV+ + QT +SR +GFVT ++ A
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 89 ERACKDPNPIIDGRKANVNLA 109
+ A +DG + A
Sbjct: 62 DAAMAASPHAVDGNTVELKRA 82
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 58.5 bits (140), Expect = 1e-09
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
+++VG L ++ T+ LR FE FG I+ V++ D TG+S+GYGF+T +D A RA +
Sbjct: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
Query: 95 PN 96
N
Sbjct: 290 LN 291
Score = 26.6 bits (57), Expect = 4.8
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 50 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 84
L +F G + + +I+DR + +S+G +V +
Sbjct: 148 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 182
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 58.5 bits (140), Expect = 1e-09
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
+++VG L ++ T+ LR FE FG I+ V++ D TG+S+GYGF+T +D A RA +
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 95 PN 96
N
Sbjct: 324 LN 325
Score = 26.6 bits (57), Expect = 4.8
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 50 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 84
L +F G + + +I+DR + +S+G +V +
Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 216
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 58.5 bits (140), Expect = 1e-09
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
+++VG L ++ T+ LR FE FG I+ V++ D TG+S+GYGF+T +D A RA +
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 95 PN 96
N
Sbjct: 308 LN 309
Score = 26.6 bits (57), Expect = 4.8
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 50 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 84
L +F G + + +I+DR + +S+G +V +
Sbjct: 166 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 200
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 57.4 bits (137), Expect = 3e-09
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+F+GGL T + +L F +G I E ++I DR+T KSRG+ FVT A A+ A +D
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 PN-PIIDGRKANVNLA 109
N +DG+ V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 57.4 bits (137), Expect = 3e-09
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
K+F+GGL T + +L F +G I E ++I DR+T KSRG+ FVT A A+ A +D
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 PN-PIIDGRKANVNLA 109
N +DG+ V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 57.0 bits (136), Expect = 3e-09
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
+++VG L ++ T+ LR FE FG IE ++ D +TG+S+GYGF+T +D A++A +
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 95 PN 96
N
Sbjct: 311 LN 312
Score = 27.3 bits (59), Expect = 2.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 50 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 84
L ++F G + + +I+DR + +S+G +V D
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 57.0 bits (136), Expect = 3e-09
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
+++VG L ++ T+ LR FE FG IE ++ D +TG+S+GYGF+T +D A++A +
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 95 PN 96
N
Sbjct: 311 LN 312
Score = 27.3 bits (59), Expect = 2.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 50 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 84
L ++F G + + +I+DR + +S+G +V D
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,958,554
Number of Sequences: 37866
Number of extensions: 210437
Number of successful extensions: 1255
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 490
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.