Guide to the Human Genome
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Name: RBM38 Sequence: fasta or formatted (121aa) NCBI GI: 34577105
Description:

RNA-binding region containing protein 1 isoform b

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [239aa] RNA-binding region containing protein 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         16           3
 C cysteine            1.7          2           1
 D aspartate           5.8          7           1
 E glutamate           3.3          4           2
 F phenylalanine       5.0          6           1
 G glycine            10.7         13           2
 H histidine           1.7          2           1
 I isoleucine          4.1          5           2
 K lysine              5.8          7           1
 L leucine             6.6          8           2
 M methionine          2.5          3           1
 N asparagine          2.5          3           1
 P proline             8.3         10           1
 Q glutamine           3.3          4           1
 R arginine            6.6          8           1
 S serine              4.1          5           1
 T threonine           7.4          9           2
 V valine              4.1          5           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA-binding region containing protein 1 isoform b [H... 
RBM38                 1.000   RNA-binding region containing protein 1 isoform a [H...
RBM24                 0.719   RNA binding motif protein 24 isoform 1 
RBM24                 0.254   RNA binding motif protein 24 isoform 2 
RBM24                 0.241   RNA binding motif protein 24 isoform 3 
MSI2                  0.201   musashi 2 isoform a 
MSI2                  0.196   musashi 2 isoform b 
DAZAP1                0.188   DAZ associated protein 1 isoform a 
DAZAP1                0.188   DAZ associated protein 1 isoform b 
MSI1                  0.183   musashi 1 
HNRNPA2B1             0.183   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.183   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
HNRNPA3               0.174   heterogeneous nuclear ribonucleoprotein A3 
RBM3                  0.174   RNA binding motif protein 3 
CIRBP                 0.170   cold inducible RNA binding protein 
HNRNPA1L2             0.165   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.165   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1               0.165   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA1               0.165   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
HNRNPAB               0.161   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPAB               0.161   heterogeneous nuclear ribonucleoprotein A/B isoform ...
BRUNOL5               0.156   bruno-like 5, RNA binding protein isoform 1 
HNRNPA0               0.152   heterogeneous nuclear ribonucleoprotein A0 
RBM23                 0.152   RNA binding motif protein 23 isoform 3 
RBM23                 0.152   RNA binding motif protein 23 isoform 1 
RBM23                 0.152   RNA binding motif protein 23 isoform 2 
RBMXL1                0.143   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.143   RNA binding motif protein, X-linked-like 1 
RBM39                 0.143   RNA binding motif protein 39 isoform b 
RBM39                 0.143   RNA binding motif protein 39 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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