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Search of human proteins with 34452730
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34452730 poly(A) binding protein interacting protein 1
isoform 3 [Homo sapiens]
(367 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34452730 poly(A) binding protein interacting protein 1 isofor... 745 0.0
gi|33386693 poly(A) binding protein interacting protein 1 isofor... 745 0.0
gi|17511255 poly(A) binding protein interacting protein 1 isofor... 745 0.0
gi|169212085 PREDICTED: similar to poly(A) binding protein inter... 734 0.0
gi|239752553 PREDICTED: similar to poly(A) binding protein inter... 734 0.0
gi|89041275 PREDICTED: similar to poly(A) binding protein intera... 734 0.0
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 77 2e-14
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 77 2e-14
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 77 2e-14
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 77 2e-14
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 77 2e-14
gi|215422401 hypothetical protein LOC9811 isoform 2 [Homo sapiens] 75 9e-14
gi|7662112 hypothetical protein LOC9811 isoform 1 [Homo sapiens] 75 9e-14
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 68 1e-11
gi|110630018 eukaryotic translation initiation factor 4 gamma, 2... 43 5e-04
gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i... 43 5e-04
gi|118498362 kinectin 1 isoform b [Homo sapiens] 35 0.14
gi|118498356 kinectin 1 isoform a [Homo sapiens] 35 0.14
gi|118498368 kinectin 1 isoform c [Homo sapiens] 35 0.14
gi|33620775 kinectin 1 isoform a [Homo sapiens] 35 0.14
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 34 0.24
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 33 0.53
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 33 0.53
gi|211059433 coiled-coil domain containing 79 [Homo sapiens] 33 0.53
gi|153945846 inositol 1,4,5-triphosphate receptor, type 3 [Homo ... 32 0.69
gi|23510352 MIF4G domain containing [Homo sapiens] 32 0.90
gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens] 32 1.2
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens] 30 2.6
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 30 4.5
gi|11036654 protocadherin beta 13 precursor [Homo sapiens] 30 4.5
>gi|34452730 poly(A) binding protein interacting protein 1 isoform 3
[Homo sapiens]
Length = 367
Score = 745 bits (1924), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 60
MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ
Sbjct: 1 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 60
Query: 61 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 120
PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS
Sbjct: 61 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 120
Query: 121 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 180
PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR
Sbjct: 121 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 180
Query: 181 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 240
ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV
Sbjct: 181 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 240
Query: 241 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 300
VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF
Sbjct: 241 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 300
Query: 301 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 360
TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE
Sbjct: 301 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 360
Query: 361 SERKRKQ 367
SERKRKQ
Sbjct: 361 SERKRKQ 367
>gi|33386693 poly(A) binding protein interacting protein 1 isoform 2
[Homo sapiens]
Length = 400
Score = 745 bits (1924), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 60
MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ
Sbjct: 34 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 93
Query: 61 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 120
PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS
Sbjct: 94 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 153
Query: 121 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 180
PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR
Sbjct: 154 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 213
Query: 181 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 240
ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV
Sbjct: 214 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 273
Query: 241 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 300
VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF
Sbjct: 274 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 333
Query: 301 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 360
TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE
Sbjct: 334 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 393
Query: 361 SERKRKQ 367
SERKRKQ
Sbjct: 394 SERKRKQ 400
>gi|17511255 poly(A) binding protein interacting protein 1 isoform 1
[Homo sapiens]
Length = 479
Score = 745 bits (1924), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 60
MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ
Sbjct: 113 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 172
Query: 61 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 120
PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS
Sbjct: 173 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 232
Query: 121 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 180
PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR
Sbjct: 233 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 292
Query: 181 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 240
ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV
Sbjct: 293 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 352
Query: 241 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 300
VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF
Sbjct: 353 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 412
Query: 301 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 360
TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE
Sbjct: 413 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 472
Query: 361 SERKRKQ 367
SERKRKQ
Sbjct: 473 SERKRKQ 479
>gi|169212085 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 516
Score = 734 bits (1894), Expect = 0.0
Identities = 362/367 (98%), Positives = 362/367 (98%)
Query: 1 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 60
MAKPQVVVAPVL SKLSVNAPEFYPSGYSSSYTESYE GCEDYPT SEYVQDFLNHLTEQ
Sbjct: 150 MAKPQVVVAPVLRSKLSVNAPEFYPSGYSSSYTESYEVGCEDYPTPSEYVQDFLNHLTEQ 209
Query: 61 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 120
PGSFETEIEQFAETLNGCVTTDDALQEL ELIYQQATSIPNFSYMGARLCNYLSHHLTIS
Sbjct: 210 PGSFETEIEQFAETLNGCVTTDDALQELAELIYQQATSIPNFSYMGARLCNYLSHHLTIS 269
Query: 121 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 180
PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV FLGELYLNLEIKGTNGQVTR
Sbjct: 270 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVFFLGELYLNLEIKGTNGQVTR 329
Query: 181 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 240
ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV
Sbjct: 330 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 389
Query: 241 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 300
VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF
Sbjct: 390 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 449
Query: 301 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 360
TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE
Sbjct: 450 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 509
Query: 361 SERKRKQ 367
SERKRKQ
Sbjct: 510 SERKRKQ 516
>gi|239752553 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 457
Score = 734 bits (1894), Expect = 0.0
Identities = 362/367 (98%), Positives = 362/367 (98%)
Query: 1 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 60
MAKPQVVVAPVL SKLSVNAPEFYPSGYSSSYTESYE GCEDYPT SEYVQDFLNHLTEQ
Sbjct: 91 MAKPQVVVAPVLRSKLSVNAPEFYPSGYSSSYTESYEVGCEDYPTPSEYVQDFLNHLTEQ 150
Query: 61 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 120
PGSFETEIEQFAETLNGCVTTDDALQEL ELIYQQATSIPNFSYMGARLCNYLSHHLTIS
Sbjct: 151 PGSFETEIEQFAETLNGCVTTDDALQELAELIYQQATSIPNFSYMGARLCNYLSHHLTIS 210
Query: 121 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 180
PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV FLGELYLNLEIKGTNGQVTR
Sbjct: 211 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVFFLGELYLNLEIKGTNGQVTR 270
Query: 181 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 240
ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV
Sbjct: 271 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 330
Query: 241 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 300
VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF
Sbjct: 331 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 390
Query: 301 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 360
TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE
Sbjct: 391 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 450
Query: 361 SERKRKQ 367
SERKRKQ
Sbjct: 451 SERKRKQ 457
>gi|89041275 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 488
Score = 734 bits (1894), Expect = 0.0
Identities = 362/367 (98%), Positives = 362/367 (98%)
Query: 1 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 60
MAKPQVVVAPVL SKLSVNAPEFYPSGYSSSYTESYE GCEDYPT SEYVQDFLNHLTEQ
Sbjct: 122 MAKPQVVVAPVLRSKLSVNAPEFYPSGYSSSYTESYEVGCEDYPTPSEYVQDFLNHLTEQ 181
Query: 61 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 120
PGSFETEIEQFAETLNGCVTTDDALQEL ELIYQQATSIPNFSYMGARLCNYLSHHLTIS
Sbjct: 182 PGSFETEIEQFAETLNGCVTTDDALQELAELIYQQATSIPNFSYMGARLCNYLSHHLTIS 241
Query: 121 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 180
PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV FLGELYLNLEIKGTNGQVTR
Sbjct: 242 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVFFLGELYLNLEIKGTNGQVTR 301
Query: 181 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 240
ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV
Sbjct: 302 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 361
Query: 241 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 300
VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF
Sbjct: 362 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 421
Query: 301 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 360
TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE
Sbjct: 422 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 481
Query: 361 SERKRKQ 367
SERKRKQ
Sbjct: 482 SERKRKQ 488
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 77.4 bits (189), Expect = 2e-14
Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 57/300 (19%)
Query: 3 KPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TLSEYVQDFLNH 56
+P+ ++A VLM++ + +N E S + G ED L V+ LN
Sbjct: 711 EPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDLFRRVRSILNK 770
Query: 57 LTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHH 116
LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS A +C L
Sbjct: 771 LT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAL 825
Query: 117 LTISPQSG----NFRQLLLQRCRTEYE---------------------------VKDQAA 145
+ + NFR+LLL RC+ E+E +K++
Sbjct: 826 KVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKEELE 885
Query: 146 KGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLI 205
+ ++ R+R + F+GEL+ L++ + + + + + L N +++L
Sbjct: 886 EARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKLLKNHDEESLE 933
Query: 206 CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 265
C +LL G L+ EK K M++ ++E ++ + S ++ ML +++LR SNW
Sbjct: 934 CLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNW 990
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 77.4 bits (189), Expect = 2e-14
Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 57/300 (19%)
Query: 3 KPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TLSEYVQDFLNH 56
+P+ ++A VLM++ + +N E S + G ED L V+ LN
Sbjct: 624 EPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDLFRRVRSILNK 683
Query: 57 LTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHH 116
LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS A +C L
Sbjct: 684 LT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAL 738
Query: 117 LTISPQSG----NFRQLLLQRCRTEYE---------------------------VKDQAA 145
+ + NFR+LLL RC+ E+E +K++
Sbjct: 739 KVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKEELE 798
Query: 146 KGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLI 205
+ ++ R+R + F+GEL+ L++ + + + + + L N +++L
Sbjct: 799 EARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKLLKNHDEESLE 846
Query: 206 CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 265
C +LL G L+ EK K M++ ++E ++ + S ++ ML +++LR SNW
Sbjct: 847 CLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNW 903
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 77.4 bits (189), Expect = 2e-14
Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 57/300 (19%)
Query: 3 KPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TLSEYVQDFLNH 56
+P+ ++A VLM++ + +N E S + G ED L V+ LN
Sbjct: 547 EPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDLFRRVRSILNK 606
Query: 57 LTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHH 116
LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS A +C L
Sbjct: 607 LT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAL 661
Query: 117 LTISPQSG----NFRQLLLQRCRTEYE---------------------------VKDQAA 145
+ + NFR+LLL RC+ E+E +K++
Sbjct: 662 KVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKEELE 721
Query: 146 KGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLI 205
+ ++ R+R + F+GEL+ L++ + + + + + L N +++L
Sbjct: 722 EARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKLLKNHDEESLE 769
Query: 206 CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 265
C +LL G L+ EK K M++ ++E ++ + S ++ ML +++LR SNW
Sbjct: 770 CLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNW 826
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 77.4 bits (189), Expect = 2e-14
Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 57/300 (19%)
Query: 3 KPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TLSEYVQDFLNH 56
+P+ ++A VLM++ + +N E S + G ED L V+ LN
Sbjct: 711 EPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDLFRRVRSILNK 770
Query: 57 LTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHH 116
LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS A +C L
Sbjct: 771 LT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAL 825
Query: 117 LTISPQSG----NFRQLLLQRCRTEYE---------------------------VKDQAA 145
+ + NFR+LLL RC+ E+E +K++
Sbjct: 826 KVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKEELE 885
Query: 146 KGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLI 205
+ ++ R+R + F+GEL+ L++ + + + + + L N +++L
Sbjct: 886 EARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKLLKNHDEESLE 933
Query: 206 CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 265
C +LL G L+ EK K M++ ++E ++ + S ++ ML +++LR SNW
Sbjct: 934 CLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNW 990
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 77.4 bits (189), Expect = 2e-14
Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 57/300 (19%)
Query: 3 KPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TLSEYVQDFLNH 56
+P+ ++A VLM++ + +N E S + G ED L V+ LN
Sbjct: 515 EPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDLFRRVRSILNK 574
Query: 57 LTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHH 116
LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS A +C L
Sbjct: 575 LT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMAL 629
Query: 117 LTISPQSG----NFRQLLLQRCRTEYE---------------------------VKDQAA 145
+ + NFR+LLL RC+ E+E +K++
Sbjct: 630 KVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKEELE 689
Query: 146 KGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLI 205
+ ++ R+R + F+GEL+ L++ + + + + + L N +++L
Sbjct: 690 EARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKLLKNHDEESLE 737
Query: 206 CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 265
C +LL G L+ EK K M++ ++E ++ + S ++ ML +++LR SNW
Sbjct: 738 CLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNW 794
>gi|215422401 hypothetical protein LOC9811 isoform 2 [Homo sapiens]
Length = 600
Score = 75.1 bits (183), Expect = 9e-14
Identities = 53/216 (24%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 52 DFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCN 111
+ LN + +T++ F E +++ L E+V IYQ+A S +F++ A+LC+
Sbjct: 379 EILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCD 438
Query: 112 YLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEI 171
++ + + FR LLL + ++ V+++ + D +R+ F+ FL E++ +
Sbjct: 439 KMALFMV---EGTKFRSLLLNMLQKDFTVREELQQQDV---ERWLGFITFLCEVFGTM-- 490
Query: 172 KGTNGQVTRADI--LQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMD 229
+ + G+ R + + LRELL + + +D ++C L+ TG +LE+ E
Sbjct: 491 RSSTGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM---- 544
Query: 230 MEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 265
M E++ + +L + S + +LL+++EL +++W
Sbjct: 545 MTELLASARDKMLCPSESMLTRSLLLEVIELHANSW 580
>gi|7662112 hypothetical protein LOC9811 isoform 1 [Homo sapiens]
Length = 598
Score = 75.1 bits (183), Expect = 9e-14
Identities = 53/216 (24%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 52 DFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCN 111
+ LN + +T++ F E +++ L E+V IYQ+A S +F++ A+LC+
Sbjct: 377 EILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCD 436
Query: 112 YLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEI 171
++ + + FR LLL + ++ V+++ + D +R+ F+ FL E++ +
Sbjct: 437 KMALFMV---EGTKFRSLLLNMLQKDFTVREELQQQDV---ERWLGFITFLCEVFGTM-- 488
Query: 172 KGTNGQVTRADI--LQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMD 229
+ + G+ R + + LRELL + + +D ++C L+ TG +LE+ E
Sbjct: 489 RSSTGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM---- 542
Query: 230 MEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 265
M E++ + +L + S + +LL+++EL +++W
Sbjct: 543 MTELLASARDKMLCPSESMLTRSLLLEVIELHANSW 578
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3
[Homo sapiens]
Length = 1585
Score = 67.8 bits (164), Expect = 1e-11
Identities = 65/270 (24%), Positives = 122/270 (45%), Gaps = 55/270 (20%)
Query: 30 SSYTESYEDGCEDYPT--LSEYVQDFLNHLTEQPGSFETEIEQFAETLNGC-VTTDDALQ 86
S +S D E+ T L V+ LN LT Q Q + ++G V T++ L+
Sbjct: 736 SQKRDSQADDPENIKTQELFRKVRSILNKLTPQM------FNQLMKQVSGLTVDTEERLK 789
Query: 87 ELVELIYQQATSIPNFSYMGARLCNYL-SHHLTISPQSGN---FRQLLLQRCRTEYE--- 139
+++L++++A P+FS A +C L + + ++ + GN FR+LLL RC+ E+E
Sbjct: 790 GVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDK 849
Query: 140 ------------------------VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTN 175
+ D+ + + R+R + F+GEL+ L++
Sbjct: 850 ADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELF-KLKM---- 904
Query: 176 GQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQ 235
+ + + + + L N +++L C +LL G L+ EK K M++
Sbjct: 905 -------LTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFN 954
Query: 236 RIENVVLDANCSRDVKQMLLKLVELRSSNW 265
++E +V + S ++ ML +++LR NW
Sbjct: 955 QMEKIVKERKTSSRIRFMLQDVIDLRLCNW 984
>gi|110630018 eukaryotic translation initiation factor 4 gamma, 2
isoform 2 [Homo sapiens]
Length = 869
Score = 42.7 bits (99), Expect = 5e-04
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 41 EDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIP 100
E + + V+ LN LT P F+ + E LN V + L+ ++ LI +A P
Sbjct: 72 ERHDAIFRKVRGILNKLT--PEKFD---KLCLELLNVGVESKLILKGVILLIVDKALEEP 126
Query: 101 NFSYMGARLCNYLSHHLTI-----------SPQSGNFRQLLLQRCRTEYEVK----DQAA 145
+S + A+LC L+ QS FR+LL+ + + E+E + D
Sbjct: 127 KYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYD 186
Query: 146 KGD-----EVTRKRFHAFVLFLGELYLNLEIKGTNGQVT--RADILQVGLRELLNA---L 195
K + E +R A + LG N++ G G++ IL ++ LL +
Sbjct: 187 KRENPLLPEEEEQRAIAKIKMLG----NIKFIGELGKLDLIHESILHKCIKTLLEKKKRV 242
Query: 196 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 255
M ++L C ++++ G L+ E+ K M++ R+ +++L ++ +L
Sbjct: 243 QLKDMGEDLECLCQIMRTVGPRLDH---ERAKSLMDQYFARMCSLMLSKELPARIRFLLQ 299
Query: 256 KLVELRSSNW 265
VELR +W
Sbjct: 300 DTVELREHHW 309
>gi|4503539 eukaryotic translation initiation factor 4 gamma, 2
isoform 1 [Homo sapiens]
Length = 907
Score = 42.7 bits (99), Expect = 5e-04
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 41 EDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIP 100
E + + V+ LN LT P F+ + E LN V + L+ ++ LI +A P
Sbjct: 72 ERHDAIFRKVRGILNKLT--PEKFD---KLCLELLNVGVESKLILKGVILLIVDKALEEP 126
Query: 101 NFSYMGARLCNYLSHHLTI-----------SPQSGNFRQLLLQRCRTEYEVK----DQAA 145
+S + A+LC L+ QS FR+LL+ + + E+E + D
Sbjct: 127 KYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYD 186
Query: 146 KGD-----EVTRKRFHAFVLFLGELYLNLEIKGTNGQVT--RADILQVGLRELLNA---L 195
K + E +R A + LG N++ G G++ IL ++ LL +
Sbjct: 187 KRENPLLPEEEEQRAIAKIKMLG----NIKFIGELGKLDLIHESILHKCIKTLLEKKKRV 242
Query: 196 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 255
M ++L C ++++ G L+ E+ K M++ R+ +++L ++ +L
Sbjct: 243 QLKDMGEDLECLCQIMRTVGPRLDH---ERAKSLMDQYFARMCSLMLSKELPARIRFLLQ 299
Query: 256 KLVELRSSNW 265
VELR +W
Sbjct: 300 DTVELREHHW 309
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 34.7 bits (78), Expect = 0.14
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 163 GELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAW 222
G L E N +V D L L +FS +D +C V LLK V++DA
Sbjct: 267 GTKKLKTETDKENAEVKFKDFLL----SLKTMMFS---EDEALCVVDLLKEKSGVIQDAL 319
Query: 223 KEKGKMDMEEIIQRIEN-------VVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 275
K+ K ++ +I +++ V DA ++D + L + + V R
Sbjct: 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDR 379
Query: 276 EATPENDPNYFMNE 289
T E + N F N+
Sbjct: 380 IGTLEKEHNVFQNK 393
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 34.7 bits (78), Expect = 0.14
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 163 GELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAW 222
G L E N +V D L L +FS +D +C V LLK V++DA
Sbjct: 267 GTKKLKTETDKENAEVKFKDFLL----SLKTMMFS---EDEALCVVDLLKEKSGVIQDAL 319
Query: 223 KEKGKMDMEEIIQRIEN-------VVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 275
K+ K ++ +I +++ V DA ++D + L + + V R
Sbjct: 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDR 379
Query: 276 EATPENDPNYFMNE 289
T E + N F N+
Sbjct: 380 IGTLEKEHNVFQNK 393
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 34.7 bits (78), Expect = 0.14
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 163 GELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAW 222
G L E N +V D L L +FS +D +C V LLK V++DA
Sbjct: 267 GTKKLKTETDKENAEVKFKDFLL----SLKTMMFS---EDEALCVVDLLKEKSGVIQDAL 319
Query: 223 KEKGKMDMEEIIQRIEN-------VVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 275
K+ K ++ +I +++ V DA ++D + L + + V R
Sbjct: 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDR 379
Query: 276 EATPENDPNYFMNE 289
T E + N F N+
Sbjct: 380 IGTLEKEHNVFQNK 393
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 34.7 bits (78), Expect = 0.14
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 163 GELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAW 222
G L E N +V D L L +FS +D +C V LLK V++DA
Sbjct: 267 GTKKLKTETDKENAEVKFKDFLL----SLKTMMFS---EDEALCVVDLLKEKSGVIQDAL 319
Query: 223 KEKGKMDMEEIIQRIEN-------VVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 275
K+ K ++ +I +++ V DA ++D + L + + V R
Sbjct: 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDR 379
Query: 276 EATPENDPNYFMNE 289
T E + N F N+
Sbjct: 380 IGTLEKEHNVFQNK 393
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 33.9 bits (76), Expect = 0.24
Identities = 34/178 (19%), Positives = 75/178 (42%), Gaps = 11/178 (6%)
Query: 190 ELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRD 249
E+L L P DD++ A+ LK G L + + I +R+ N++ ++ +
Sbjct: 276 EMLTLLLERPTDDSVEVAIGFLKECGLKL----TQVSPRGINAIFERLRNILHESEIDKR 331
Query: 250 VKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFM--NEPTFYTSDGVPFTAADPDY 307
V+ M+ + +R + + E+D M E + D + DP++
Sbjct: 332 VQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNF 391
Query: 308 ---QEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESE 362
+EKY+ + +++ + + + AG D+ ++E + E +E +K + +
Sbjct: 392 MENEEKYKAI--KKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIHDK 447
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 32.7 bits (73), Expect = 0.53
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 69 EQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQ 128
EQ+ E L ++ AL EL E I Q+ + ++ A+ LS T S FR
Sbjct: 863 EQYTERLQASISAFRALDELFEAIEQKQRELADYLCEDAQ---QLSLEDTFSTMKA-FRD 918
Query: 129 LLLQRCRTEYEVKDQAAKGD 148
L L+ + + K+QAAK +
Sbjct: 919 LFLRALKENKDRKEQAAKAE 938
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 32.7 bits (73), Expect = 0.53
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 69 EQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQ 128
EQ+ E L ++ AL EL E I Q+ + ++ A+ LS T S FR
Sbjct: 863 EQYTERLQASISAFRALDELFEAIEQKQRELADYLCEDAQ---QLSLEDTFSTMKA-FRD 918
Query: 129 LLLQRCRTEYEVKDQAAKGD 148
L L+ + + K+QAAK +
Sbjct: 919 LFLRALKENKDRKEQAAKAE 938
>gi|211059433 coiled-coil domain containing 79 [Homo sapiens]
Length = 727
Score = 32.7 bits (73), Expect = 0.53
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 199 PMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDAN---CSRDVKQMLL 255
P D+N +K + + + LE+ W++ +EI+ RIE + + N R+ Q +
Sbjct: 382 PFDENETQQLKDISVKENNLEEHWRKA-----KEILHRIEQLEREGNEEEIQRENYQDNI 436
Query: 256 KLVELRSSN-WGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEK 310
+ + N W +HA R + E++ + Y S GV A D Q K
Sbjct: 437 SSMNISIQNTWKHLHADRIGRGSKAEDEDKSHSRQLQSYKSHGVMSKACTNDDQMK 492
>gi|153945846 inositol 1,4,5-triphosphate receptor, type 3 [Homo
sapiens]
Length = 2671
Score = 32.3 bits (72), Expect = 0.69
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 4 PQVVVAPVLMSKLSVNAPEFYP-SGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPG 62
PQ +V PV ++L P Y S+ S +D + E+V+D+LN++ +
Sbjct: 790 PQELVTPVKFARLWTEIPTAITIKDYDSNLNASRDDKKNKFANTMEFVEDYLNNVVSEAV 849
Query: 63 SFETE 67
F E
Sbjct: 850 PFANE 854
>gi|23510352 MIF4G domain containing [Homo sapiens]
Length = 256
Score = 32.0 bits (71), Expect = 0.90
Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 20/196 (10%)
Query: 85 LQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQA 144
L+++ +I + FS R+C + + FR+ LL R + EY+ ++Q
Sbjct: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQEYQAREQL 127
Query: 145 AKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNL 204
+ + + +V F+ ++ L + + + + + LF D+L
Sbjct: 128 RAR---SLQGWVCYVTFICNIFDYLRVNNMP--------MMALVNPVYDCLFRLAQPDSL 176
Query: 205 I------CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 258
C V L G LE K G+ E + + +L S + +LL+++
Sbjct: 177 SKEEEVDCLVLQLHRVGEQLE---KMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII 233
Query: 259 ELRSSNWGRVHATSTY 274
E R++ W A Y
Sbjct: 234 EFRAAGWKTTPAAHKY 249
>gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens]
Length = 2419
Score = 31.6 bits (70), Expect = 1.2
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 230 MEEIIQRIENVVL----DANCSRDVKQMLLKLVE----LRSSNWGRVHATSTYREATPEN 281
++E+ + E + L DA +++K+ L+ E L +S + ++ AT Y + +
Sbjct: 320 VKELCAKAEKLTLSHPSDAPQIQEMKEDLVSSWEHIRALATSRYEKLQATYWYHRFSSDF 379
Query: 282 DP-NYFMNEPTF-YTSDGVPFTAADPD-----YQEKYQELLEREDFFPDYEENGTDLSGA 334
D + +MNE T +D +P A + +Q+ E+ +D F +E G DL A
Sbjct: 380 DELSGWMNEKTAAINADELPTDVAGGEVLLDRHQQHKHEIDSYDDRFQSADETGQDLVNA 439
Query: 335 GDPYLDDIDDEMD 347
D++ ++M+
Sbjct: 440 NHEASDEVREKME 452
>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
Length = 1282
Score = 30.4 bits (67), Expect = 2.6
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 306 DYQEKYQELLEREDFFPDYE--ENGTDLSGAGDPYLDDID------DEMDPEIEEAYEKF 357
D ++ + L E E+ + D+E E G G P + D +E+DP+ EE+ +K
Sbjct: 765 DDKDAAKVLAEDEELYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKK 824
Query: 358 CLESERKRKQ 367
L+ +RK K+
Sbjct: 825 HLDKKRKLKE 834
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 29.6 bits (65), Expect = 4.5
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 306 DYQEKYQELLEREDFFPDYEENGTDLSGA-GDPYLDDIDDEMDPEIEEAYEK 356
DY+E +LL + + Y+ + + + + Y++ +DDE + E EE Y++
Sbjct: 130 DYRENVFKLLPQLTYLDGYDRDDKEAPDSDAEGYVEGLDDEEEDEDEEEYDE 181
>gi|11036654 protocadherin beta 13 precursor [Homo sapiens]
Length = 798
Score = 29.6 bits (65), Expect = 4.5
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 4 PQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDG---C---EDYPTLSEYVQDFLNHL 57
P+V ++ S + NAPE + +S S +S E+G C ED P L + ++F L
Sbjct: 346 PEVTMS-AFTSPIPENAPETVVALFSVSDLDSGENGKISCSIQEDLPFLLKSAENFYTLL 404
Query: 58 TEQPGSFETEIE 69
TE+P E+ E
Sbjct: 405 TERPLDRESRAE 416
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,338,504
Number of Sequences: 37866
Number of extensions: 648561
Number of successful extensions: 1933
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1879
Number of HSP's gapped (non-prelim): 48
length of query: 367
length of database: 18,247,518
effective HSP length: 104
effective length of query: 263
effective length of database: 14,309,454
effective search space: 3763386402
effective search space used: 3763386402
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.