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Search of human proteins with 33386693
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33386693 poly(A) binding protein interacting protein 1
isoform 2 [Homo sapiens]
(400 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33386693 poly(A) binding protein interacting protein 1 isofor... 811 0.0
gi|17511255 poly(A) binding protein interacting protein 1 isofor... 795 0.0
gi|169212085 PREDICTED: similar to poly(A) binding protein inter... 780 0.0
gi|239752553 PREDICTED: similar to poly(A) binding protein inter... 780 0.0
gi|89041275 PREDICTED: similar to poly(A) binding protein intera... 780 0.0
gi|34452730 poly(A) binding protein interacting protein 1 isofor... 745 0.0
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|215422401 hypothetical protein LOC9811 isoform 2 [Homo sapiens] 75 1e-13
gi|7662112 hypothetical protein LOC9811 isoform 1 [Homo sapiens] 75 1e-13
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 68 2e-11
gi|110630018 eukaryotic translation initiation factor 4 gamma, 2... 43 6e-04
gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i... 43 6e-04
gi|118498362 kinectin 1 isoform b [Homo sapiens] 35 0.16
gi|118498356 kinectin 1 isoform a [Homo sapiens] 35 0.16
gi|118498368 kinectin 1 isoform c [Homo sapiens] 35 0.16
gi|33620775 kinectin 1 isoform a [Homo sapiens] 35 0.16
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 34 0.27
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 33 0.60
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 33 0.60
gi|211059433 coiled-coil domain containing 79 [Homo sapiens] 33 0.60
gi|153945846 inositol 1,4,5-triphosphate receptor, type 3 [Homo ... 32 0.78
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 1.0
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 1.0
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 1.0
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 32 1.0
gi|23510352 MIF4G domain containing [Homo sapiens] 32 1.0
>gi|33386693 poly(A) binding protein interacting protein 1 isoform 2
[Homo sapiens]
Length = 400
Score = 811 bits (2095), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG 60
MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG
Sbjct: 1 MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG 60
Query: 61 YSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQE 120
YSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQE
Sbjct: 61 YSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQE 120
Query: 121 LVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKG 180
LVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKG
Sbjct: 121 LVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKG 180
Query: 181 DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICA 240
DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICA
Sbjct: 181 DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICA 240
Query: 241 VKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGR 300
VKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGR
Sbjct: 241 VKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGR 300
Query: 301 VHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEEN 360
VHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEEN
Sbjct: 301 VHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEEN 360
Query: 361 GTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 400
GTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 361 GTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 400
>gi|17511255 poly(A) binding protein interacting protein 1 isoform 1
[Homo sapiens]
Length = 479
Score = 795 bits (2053), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 9 PEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTES 68
PEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTES
Sbjct: 88 PEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTES 147
Query: 69 YEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ 128
YEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ
Sbjct: 148 YEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ 207
Query: 129 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 188
ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF
Sbjct: 208 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 267
Query: 189 HAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 248
HAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG
Sbjct: 268 HAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 327
Query: 249 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 308
SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR
Sbjct: 328 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 387
Query: 309 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 368
EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG
Sbjct: 388 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 447
Query: 369 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 400
DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 448 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 479
>gi|169212085 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 516
Score = 780 bits (2015), Expect = 0.0
Identities = 386/392 (98%), Positives = 386/392 (98%)
Query: 9 PEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTES 68
PEQTR LRAPPSSQDKIPQQNSESAMAKPQVVVAPVL SKLSVNAPEFYPSGYSSSYTES
Sbjct: 125 PEQTRSLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLRSKLSVNAPEFYPSGYSSSYTES 184
Query: 69 YEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ 128
YE GCEDYPT SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQEL ELIYQQ
Sbjct: 185 YEVGCEDYPTPSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELAELIYQQ 244
Query: 129 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 188
ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF
Sbjct: 245 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 304
Query: 189 HAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 248
HAFV FLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG
Sbjct: 305 HAFVFFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 364
Query: 249 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 308
SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR
Sbjct: 365 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 424
Query: 309 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 368
EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG
Sbjct: 425 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 484
Query: 369 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 400
DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 485 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 516
>gi|239752553 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 457
Score = 780 bits (2015), Expect = 0.0
Identities = 386/392 (98%), Positives = 386/392 (98%)
Query: 9 PEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTES 68
PEQTR LRAPPSSQDKIPQQNSESAMAKPQVVVAPVL SKLSVNAPEFYPSGYSSSYTES
Sbjct: 66 PEQTRSLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLRSKLSVNAPEFYPSGYSSSYTES 125
Query: 69 YEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ 128
YE GCEDYPT SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQEL ELIYQQ
Sbjct: 126 YEVGCEDYPTPSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELAELIYQQ 185
Query: 129 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 188
ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF
Sbjct: 186 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 245
Query: 189 HAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 248
HAFV FLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG
Sbjct: 246 HAFVFFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 305
Query: 249 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 308
SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR
Sbjct: 306 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 365
Query: 309 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 368
EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG
Sbjct: 366 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 425
Query: 369 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 400
DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 426 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 457
>gi|89041275 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 488
Score = 780 bits (2015), Expect = 0.0
Identities = 386/392 (98%), Positives = 386/392 (98%)
Query: 9 PEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTES 68
PEQTR LRAPPSSQDKIPQQNSESAMAKPQVVVAPVL SKLSVNAPEFYPSGYSSSYTES
Sbjct: 97 PEQTRSLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLRSKLSVNAPEFYPSGYSSSYTES 156
Query: 69 YEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ 128
YE GCEDYPT SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQEL ELIYQQ
Sbjct: 157 YEVGCEDYPTPSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELAELIYQQ 216
Query: 129 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 188
ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF
Sbjct: 217 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 276
Query: 189 HAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 248
HAFV FLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG
Sbjct: 277 HAFVFFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 336
Query: 249 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 308
SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR
Sbjct: 337 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 396
Query: 309 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 368
EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG
Sbjct: 397 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 456
Query: 369 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 400
DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 457 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 488
>gi|34452730 poly(A) binding protein interacting protein 1 isoform 3
[Homo sapiens]
Length = 367
Score = 745 bits (1924), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 34 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 93
MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ
Sbjct: 1 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 60
Query: 94 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 153
PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS
Sbjct: 61 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 120
Query: 154 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 213
PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR
Sbjct: 121 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 180
Query: 214 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 273
ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV
Sbjct: 181 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 240
Query: 274 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 333
VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF
Sbjct: 241 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 300
Query: 334 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 393
TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE
Sbjct: 301 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 360
Query: 394 SERKRKQ 400
SERKRKQ
Sbjct: 361 SERKRKQ 367
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 26 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 79
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 701 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 760
Query: 80 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 139
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 761 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 815
Query: 140 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 172
A +C L + + NFR+LLL RC+ E+E
Sbjct: 816 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 875
Query: 173 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 228
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 876 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 923
Query: 229 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 288
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 924 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 980
Query: 289 KLVELRSSNW 298
+++LR SNW
Sbjct: 981 DVLDLRGSNW 990
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 26 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 79
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 614 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 673
Query: 80 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 139
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 674 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 728
Query: 140 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 172
A +C L + + NFR+LLL RC+ E+E
Sbjct: 729 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 788
Query: 173 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 228
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 789 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 836
Query: 229 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 288
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 837 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 893
Query: 289 KLVELRSSNW 298
+++LR SNW
Sbjct: 894 DVLDLRGSNW 903
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 26 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 79
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 537 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 596
Query: 80 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 139
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 597 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 651
Query: 140 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 172
A +C L + + NFR+LLL RC+ E+E
Sbjct: 652 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 711
Query: 173 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 228
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 712 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 759
Query: 229 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 288
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 760 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 816
Query: 289 KLVELRSSNW 298
+++LR SNW
Sbjct: 817 DVLDLRGSNW 826
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 26 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 79
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 701 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 760
Query: 80 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 139
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 761 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 815
Query: 140 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 172
A +C L + + NFR+LLL RC+ E+E
Sbjct: 816 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 875
Query: 173 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 228
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 876 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 923
Query: 229 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 288
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 924 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 980
Query: 289 KLVELRSSNW 298
+++LR SNW
Sbjct: 981 DVLDLRGSNW 990
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 26 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 79
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 505 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 564
Query: 80 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 139
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 565 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 619
Query: 140 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 172
A +C L + + NFR+LLL RC+ E+E
Sbjct: 620 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 679
Query: 173 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 228
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 680 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 727
Query: 229 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 288
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 728 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 784
Query: 289 KLVELRSSNW 298
+++LR SNW
Sbjct: 785 DVLDLRGSNW 794
>gi|215422401 hypothetical protein LOC9811 isoform 2 [Homo sapiens]
Length = 600
Score = 75.1 bits (183), Expect = 1e-13
Identities = 53/216 (24%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 85 DFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCN 144
+ LN + +T++ F E +++ L E+V IYQ+A S +F++ A+LC+
Sbjct: 379 EILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCD 438
Query: 145 YLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEI 204
++ + + FR LLL + ++ V+++ + D +R+ F+ FL E++ +
Sbjct: 439 KMALFMV---EGTKFRSLLLNMLQKDFTVREELQQQDV---ERWLGFITFLCEVFGTM-- 490
Query: 205 KGTNGQVTRADI--LQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMD 262
+ + G+ R + + LRELL + + +D ++C L+ TG +LE+ E
Sbjct: 491 RSSTGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM---- 544
Query: 263 MEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 298
M E++ + +L + S + +LL+++EL +++W
Sbjct: 545 MTELLASARDKMLCPSESMLTRSLLLEVIELHANSW 580
>gi|7662112 hypothetical protein LOC9811 isoform 1 [Homo sapiens]
Length = 598
Score = 75.1 bits (183), Expect = 1e-13
Identities = 53/216 (24%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 85 DFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCN 144
+ LN + +T++ F E +++ L E+V IYQ+A S +F++ A+LC+
Sbjct: 377 EILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCD 436
Query: 145 YLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEI 204
++ + + FR LLL + ++ V+++ + D +R+ F+ FL E++ +
Sbjct: 437 KMALFMV---EGTKFRSLLLNMLQKDFTVREELQQQDV---ERWLGFITFLCEVFGTM-- 488
Query: 205 KGTNGQVTRADI--LQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMD 262
+ + G+ R + + LRELL + + +D ++C L+ TG +LE+ E
Sbjct: 489 RSSTGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM---- 542
Query: 263 MEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 298
M E++ + +L + S + +LL+++EL +++W
Sbjct: 543 MTELLASARDKMLCPSESMLTRSLLLEVIELHANSW 578
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3
[Homo sapiens]
Length = 1585
Score = 67.8 bits (164), Expect = 2e-11
Identities = 65/270 (24%), Positives = 122/270 (45%), Gaps = 55/270 (20%)
Query: 63 SSYTESYEDGCEDYPT--LSEYVQDFLNHLTEQPGSFETEIEQFAETLNGC-VTTDDALQ 119
S +S D E+ T L V+ LN LT Q Q + ++G V T++ L+
Sbjct: 736 SQKRDSQADDPENIKTQELFRKVRSILNKLTPQM------FNQLMKQVSGLTVDTEERLK 789
Query: 120 ELVELIYQQATSIPNFSYMGARLCNYL-SHHLTISPQSGN---FRQLLLQRCRTEYE--- 172
+++L++++A P+FS A +C L + + ++ + GN FR+LLL RC+ E+E
Sbjct: 790 GVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDK 849
Query: 173 ------------------------VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTN 208
+ D+ + + R+R + F+GEL+ L++
Sbjct: 850 ADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELF-KLKM---- 904
Query: 209 GQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQ 268
+ + + + + L N +++L C +LL G L+ EK K M++
Sbjct: 905 -------LTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFN 954
Query: 269 RIENVVLDANCSRDVKQMLLKLVELRSSNW 298
++E +V + S ++ ML +++LR NW
Sbjct: 955 QMEKIVKERKTSSRIRFMLQDVIDLRLCNW 984
>gi|110630018 eukaryotic translation initiation factor 4 gamma, 2
isoform 2 [Homo sapiens]
Length = 869
Score = 42.7 bits (99), Expect = 6e-04
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 74 EDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIP 133
E + + V+ LN LT P F+ + E LN V + L+ ++ LI +A P
Sbjct: 72 ERHDAIFRKVRGILNKLT--PEKFD---KLCLELLNVGVESKLILKGVILLIVDKALEEP 126
Query: 134 NFSYMGARLCNYLSHHLTI-----------SPQSGNFRQLLLQRCRTEYEVK----DQAA 178
+S + A+LC L+ QS FR+LL+ + + E+E + D
Sbjct: 127 KYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYD 186
Query: 179 KGD-----EVTRKRFHAFVLFLGELYLNLEIKGTNGQVT--RADILQVGLRELLNA---L 228
K + E +R A + LG N++ G G++ IL ++ LL +
Sbjct: 187 KRENPLLPEEEEQRAIAKIKMLG----NIKFIGELGKLDLIHESILHKCIKTLLEKKKRV 242
Query: 229 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 288
M ++L C ++++ G L+ E+ K M++ R+ +++L ++ +L
Sbjct: 243 QLKDMGEDLECLCQIMRTVGPRLDH---ERAKSLMDQYFARMCSLMLSKELPARIRFLLQ 299
Query: 289 KLVELRSSNW 298
VELR +W
Sbjct: 300 DTVELREHHW 309
>gi|4503539 eukaryotic translation initiation factor 4 gamma, 2
isoform 1 [Homo sapiens]
Length = 907
Score = 42.7 bits (99), Expect = 6e-04
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 74 EDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIP 133
E + + V+ LN LT P F+ + E LN V + L+ ++ LI +A P
Sbjct: 72 ERHDAIFRKVRGILNKLT--PEKFD---KLCLELLNVGVESKLILKGVILLIVDKALEEP 126
Query: 134 NFSYMGARLCNYLSHHLTI-----------SPQSGNFRQLLLQRCRTEYEVK----DQAA 178
+S + A+LC L+ QS FR+LL+ + + E+E + D
Sbjct: 127 KYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYD 186
Query: 179 KGD-----EVTRKRFHAFVLFLGELYLNLEIKGTNGQVT--RADILQVGLRELLNA---L 228
K + E +R A + LG N++ G G++ IL ++ LL +
Sbjct: 187 KRENPLLPEEEEQRAIAKIKMLG----NIKFIGELGKLDLIHESILHKCIKTLLEKKKRV 242
Query: 229 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 288
M ++L C ++++ G L+ E+ K M++ R+ +++L ++ +L
Sbjct: 243 QLKDMGEDLECLCQIMRTVGPRLDH---ERAKSLMDQYFARMCSLMLSKELPARIRFLLQ 299
Query: 289 KLVELRSSNW 298
VELR +W
Sbjct: 300 DTVELREHHW 309
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 34.7 bits (78), Expect = 0.16
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 196 GELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAW 255
G L E N +V D L L +FS +D +C V LLK V++DA
Sbjct: 267 GTKKLKTETDKENAEVKFKDFLL----SLKTMMFS---EDEALCVVDLLKEKSGVIQDAL 319
Query: 256 KEKGKMDMEEIIQRIEN-------VVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 308
K+ K ++ +I +++ V DA ++D + L + + V R
Sbjct: 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDR 379
Query: 309 EATPENDPNYFMNE 322
T E + N F N+
Sbjct: 380 IGTLEKEHNVFQNK 393
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 34.7 bits (78), Expect = 0.16
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 196 GELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAW 255
G L E N +V D L L +FS +D +C V LLK V++DA
Sbjct: 267 GTKKLKTETDKENAEVKFKDFLL----SLKTMMFS---EDEALCVVDLLKEKSGVIQDAL 319
Query: 256 KEKGKMDMEEIIQRIEN-------VVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 308
K+ K ++ +I +++ V DA ++D + L + + V R
Sbjct: 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDR 379
Query: 309 EATPENDPNYFMNE 322
T E + N F N+
Sbjct: 380 IGTLEKEHNVFQNK 393
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 34.7 bits (78), Expect = 0.16
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 196 GELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAW 255
G L E N +V D L L +FS +D +C V LLK V++DA
Sbjct: 267 GTKKLKTETDKENAEVKFKDFLL----SLKTMMFS---EDEALCVVDLLKEKSGVIQDAL 319
Query: 256 KEKGKMDMEEIIQRIEN-------VVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 308
K+ K ++ +I +++ V DA ++D + L + + V R
Sbjct: 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDR 379
Query: 309 EATPENDPNYFMNE 322
T E + N F N+
Sbjct: 380 IGTLEKEHNVFQNK 393
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 34.7 bits (78), Expect = 0.16
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 196 GELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAW 255
G L E N +V D L L +FS +D +C V LLK V++DA
Sbjct: 267 GTKKLKTETDKENAEVKFKDFLL----SLKTMMFS---EDEALCVVDLLKEKSGVIQDAL 319
Query: 256 KEKGKMDMEEIIQRIEN-------VVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 308
K+ K ++ +I +++ V DA ++D + L + + V R
Sbjct: 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDR 379
Query: 309 EATPENDPNYFMNE 322
T E + N F N+
Sbjct: 380 IGTLEKEHNVFQNK 393
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 33.9 bits (76), Expect = 0.27
Identities = 34/178 (19%), Positives = 75/178 (42%), Gaps = 11/178 (6%)
Query: 223 ELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRD 282
E+L L P DD++ A+ LK G L + + I +R+ N++ ++ +
Sbjct: 276 EMLTLLLERPTDDSVEVAIGFLKECGLKL----TQVSPRGINAIFERLRNILHESEIDKR 331
Query: 283 VKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFM--NEPTFYTSDGVPFTAADPDY 340
V+ M+ + +R + + E+D M E + D + DP++
Sbjct: 332 VQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNF 391
Query: 341 ---QEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESE 395
+EKY+ + +++ + + + AG D+ ++E + E +E +K + +
Sbjct: 392 MENEEKYKAI--KKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIHDK 447
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 32.7 bits (73), Expect = 0.60
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 102 EQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQ 161
EQ+ E L ++ AL EL E I Q+ + ++ A+ LS T S FR
Sbjct: 863 EQYTERLQASISAFRALDELFEAIEQKQRELADYLCEDAQ---QLSLEDTFSTMKA-FRD 918
Query: 162 LLLQRCRTEYEVKDQAAKGD 181
L L+ + + K+QAAK +
Sbjct: 919 LFLRALKENKDRKEQAAKAE 938
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 32.7 bits (73), Expect = 0.60
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 102 EQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQ 161
EQ+ E L ++ AL EL E I Q+ + ++ A+ LS T S FR
Sbjct: 863 EQYTERLQASISAFRALDELFEAIEQKQRELADYLCEDAQ---QLSLEDTFSTMKA-FRD 918
Query: 162 LLLQRCRTEYEVKDQAAKGD 181
L L+ + + K+QAAK +
Sbjct: 919 LFLRALKENKDRKEQAAKAE 938
>gi|211059433 coiled-coil domain containing 79 [Homo sapiens]
Length = 727
Score = 32.7 bits (73), Expect = 0.60
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 232 PMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDAN---CSRDVKQMLL 288
P D+N +K + + + LE+ W++ +EI+ RIE + + N R+ Q +
Sbjct: 382 PFDENETQQLKDISVKENNLEEHWRKA-----KEILHRIEQLEREGNEEEIQRENYQDNI 436
Query: 289 KLVELRSSN-WGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEK 343
+ + N W +HA R + E++ + Y S GV A D Q K
Sbjct: 437 SSMNISIQNTWKHLHADRIGRGSKAEDEDKSHSRQLQSYKSHGVMSKACTNDDQMK 492
>gi|153945846 inositol 1,4,5-triphosphate receptor, type 3 [Homo
sapiens]
Length = 2671
Score = 32.3 bits (72), Expect = 0.78
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 37 PQVVVAPVLMSKLSVNAPEFYP-SGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPG 95
PQ +V PV ++L P Y S+ S +D + E+V+D+LN++ +
Sbjct: 790 PQELVTPVKFARLWTEIPTAITIKDYDSNLNASRDDKKNKFANTMEFVEDYLNNVVSEAV 849
Query: 96 SFETE 100
F E
Sbjct: 850 PFANE 854
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 32.0 bits (71), Expect = 1.0
Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 26/187 (13%)
Query: 9 PEQTRPLRAPP---------SSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPS 59
P+ ++P PP SSQ P + SE+ +P + A + + PE P
Sbjct: 191 PQHSQPPPQPPAVTPEPVALSSQTSEPVE-SEAPPREP--MEAEEVEERAPAQNPELTPG 247
Query: 60 GYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTD---- 115
+ T + E ++P+ +EYV + L L + ++++ E L TTD
Sbjct: 248 PAPAGPTPAPETNAPNHPSPAEYV-EVLQELQRLESRLQPFLQRYYEVLGAAATTDYNNN 306
Query: 116 ----DALQELVELIYQQATSIPN-FSYMGARLCNYL----SHHLTISPQSGNFRQLLLQR 166
+ Q L+ L+ + + N F + CN H + P S ++LQ+
Sbjct: 307 HEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACTPPRHLHVVRPMSHYTTPMVLQQ 366
Query: 167 CRTEYEV 173
++
Sbjct: 367 AAIPIQI 373
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 32.0 bits (71), Expect = 1.0
Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 26/187 (13%)
Query: 9 PEQTRPLRAPP---------SSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPS 59
P+ ++P PP SSQ P + SE+ +P + A + + PE P
Sbjct: 191 PQHSQPPPQPPAVTPEPVALSSQTSEPVE-SEAPPREP--MEAEEVEERAPAQNPELTPG 247
Query: 60 GYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTD---- 115
+ T + E ++P+ +EYV + L L + ++++ E L TTD
Sbjct: 248 PAPAGPTPAPETNAPNHPSPAEYV-EVLQELQRLESRLQPFLQRYYEVLGAAATTDYNNN 306
Query: 116 ----DALQELVELIYQQATSIPN-FSYMGARLCNYL----SHHLTISPQSGNFRQLLLQR 166
+ Q L+ L+ + + N F + CN H + P S ++LQ+
Sbjct: 307 HEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACTPPRHLHVVRPMSHYTTPMVLQQ 366
Query: 167 CRTEYEV 173
++
Sbjct: 367 AAIPIQI 373
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 32.0 bits (71), Expect = 1.0
Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 26/187 (13%)
Query: 9 PEQTRPLRAPP---------SSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPS 59
P+ ++P PP SSQ P + SE+ +P + A + + PE P
Sbjct: 191 PQHSQPPPQPPAVTPEPVALSSQTSEPVE-SEAPPREP--MEAEEVEERAPAQNPELTPG 247
Query: 60 GYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTD---- 115
+ T + E ++P+ +EYV + L L + ++++ E L TTD
Sbjct: 248 PAPAGPTPAPETNAPNHPSPAEYV-EVLQELQRLESRLQPFLQRYYEVLGAAATTDYNNN 306
Query: 116 ----DALQELVELIYQQATSIPN-FSYMGARLCNYL----SHHLTISPQSGNFRQLLLQR 166
+ Q L+ L+ + + N F + CN H + P S ++LQ+
Sbjct: 307 HEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACTPPRHLHVVRPMSHYTTPMVLQQ 366
Query: 167 CRTEYEV 173
++
Sbjct: 367 AAIPIQI 373
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 32.0 bits (71), Expect = 1.0
Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 26/187 (13%)
Query: 9 PEQTRPLRAPP---------SSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPS 59
P+ ++P PP SSQ P + SE+ +P + A + + PE P
Sbjct: 197 PQHSQPPPQPPAVTPEPVALSSQTSEPVE-SEAPPREP--MEAEEVEERAPAQNPELTPG 253
Query: 60 GYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTD---- 115
+ T + E ++P+ +EYV + L L + ++++ E L TTD
Sbjct: 254 PAPAGPTPAPETNAPNHPSPAEYV-EVLQELQRLESRLQPFLQRYYEVLGAAATTDYNNN 312
Query: 116 ----DALQELVELIYQQATSIPN-FSYMGARLCNYL----SHHLTISPQSGNFRQLLLQR 166
+ Q L+ L+ + + N F + CN H + P S ++LQ+
Sbjct: 313 HEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACTPPRHLHVVRPMSHYTTPMVLQQ 372
Query: 167 CRTEYEV 173
++
Sbjct: 373 AAIPIQI 379
>gi|23510352 MIF4G domain containing [Homo sapiens]
Length = 256
Score = 32.0 bits (71), Expect = 1.0
Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 20/196 (10%)
Query: 118 LQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQA 177
L+++ +I + FS R+C + + FR+ LL R + EY+ ++Q
Sbjct: 68 LEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQEYQAREQL 127
Query: 178 AKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNL 237
+ + + +V F+ ++ L + + + + + LF D+L
Sbjct: 128 RAR---SLQGWVCYVTFICNIFDYLRVNNMP--------MMALVNPVYDCLFRLAQPDSL 176
Query: 238 I------CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 291
C V L G LE K G+ E + + +L S + +LL+++
Sbjct: 177 SKEEEVDCLVLQLHRVGEQLE---KMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII 233
Query: 292 ELRSSNWGRVHATSTY 307
E R++ W A Y
Sbjct: 234 EFRAAGWKTTPAAHKY 249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,887,886
Number of Sequences: 37866
Number of extensions: 724518
Number of successful extensions: 1845
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1794
Number of HSP's gapped (non-prelim): 43
length of query: 400
length of database: 18,247,518
effective HSP length: 104
effective length of query: 296
effective length of database: 14,309,454
effective search space: 4235598384
effective search space used: 4235598384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.