Guide to the Human Genome
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Name: UBE2C Sequence: fasta or formatted (161aa) NCBI GI: 32967283
Description:

ubiquitin-conjugating enzyme E2C isoform 2

Referenced in:

Cyclins and Related Functions
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [150aa] ubiquitin-conjugating enzyme E2C isoform 3
alt prot [140aa] ubiquitin-conjugating enzyme E2C isoform 4
alt prot [140aa] ubiquitin-conjugating enzyme E2C isoform 4
alt prot [50aa] ubiquitin-conjugating enzyme E2C isoform 5
alt prot [179aa] ubiquitin-conjugating enzyme E2C isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         16           3
 C cysteine            0.6          1           1
 D aspartate           3.7          6           1
 E glutamate           5.6          9           1
 F phenylalanine       2.5          4           1
 G glycine             8.7         14           2
 H histidine           1.2          2           1
 I isoleucine          2.5          4           1
 K lysine              5.6          9           2
 L leucine            11.2         18           3
 M methionine          3.7          6           2
 N asparagine          3.1          5           1
 P proline             6.8         11           1
 Q glutamine           5.6          9           2
 R arginine            4.3          7           1
 S serine              9.3         15           2
 T threonine           7.5         12           1
 V valine              4.3          7           1
 W tryptophan          2.5          4           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-conjugating enzyme E2C isoform 2 
UBE2C                 0.647   ubiquitin-conjugating enzyme E2C isoform 1 
UBE2C                 0.447   ubiquitin-conjugating enzyme E2C isoform 3 
UBE2C                 0.400   ubiquitin-conjugating enzyme E2C isoform 4 
UBE2C                 0.400   ubiquitin-conjugating enzyme E2C isoform 4 
UBE2C                 0.203   ubiquitin-conjugating enzyme E2C isoform 5 
UBE2A                 0.063   ubiquitin-conjugating enzyme E2A isoform 2 
UBE2E2                0.037   ubiquitin-conjugating enzyme E2E 2 
UBE2E3                0.037   ubiquitin-conjugating enzyme E2E 3 
UBE2E3                0.037   ubiquitin-conjugating enzyme E2E 3 
UBE2B                 0.033   ubiquitin-conjugating enzyme E2B 
UBE2E1                0.033   ubiquitin-conjugating enzyme E2E 1 isoform 1 
UBE2A                 0.033   ubiquitin-conjugating enzyme E2A isoform 1 
UBE2D1                0.023   ubiquitin-conjugating enzyme E2D 1 
UBE2D4                0.020   ubiquitin-conjugating enzyme E2D 4 (putative) 
UBE2D3                0.010   ubiquitin-conjugating enzyme E2D 3 isoform 2 
UBE2D3                0.010   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.010   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.010   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.010   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.010   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.010   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.010   ubiquitin-conjugating enzyme E2D 3 isoform 1 
CACNG8                0.010   voltage-dependent calcium channel gamma-8 subunit [H...
FLNC                  0.010   gamma filamin isoform b 
FLNC                  0.010   gamma filamin isoform a 
UBE2D2                0.010   ubiquitin-conjugating enzyme E2D 2 isoform 1 
DUSP8                 0.007   dual specificity phosphatase 8 
UBE2J1                0.007   ubiquitin-conjugating enzyme E2, J1 
IL28RA                0.007   interleukin 28 receptor, alpha isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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