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Search of human proteins with 31542718
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542718 enoyl Coenzyme A hydratase domain containing 3
[Homo sapiens]
(303 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo... 597 e-171
gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratas... 127 1e-29
gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre... 87 1e-17
gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 85 7e-17
gi|221136756 chromodomain protein, Y chromosome-like isoform d [... 85 7e-17
gi|221136753 chromodomain protein, Y chromosome-like isoform d [... 85 7e-17
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 83 3e-16
gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom... 78 8e-15
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 76 4e-14
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 76 4e-14
gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Hom... 75 5e-14
gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein ... 75 9e-14
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 74 2e-13
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 74 2e-13
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 74 2e-13
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 74 2e-13
gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A... 68 1e-11
gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Hom... 64 2e-10
gi|62530384 dodecenoyl-Coenzyme A delta isomerase precursor [Hom... 64 2e-10
gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 60 3e-09
gi|37594469 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 2 [... 55 8e-08
gi|37594471 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 1 [... 55 8e-08
gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isof... 52 5e-07
gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isof... 52 5e-07
gi|134152674 rabaptin, RAB GTPase binding effector protein 1 iso... 32 0.53
gi|50593027 enoyl Coenzyme A hydratase domain containing 1 isofo... 31 1.2
gi|23397672 homeobox D4 [Homo sapiens] 29 4.5
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens] 29 4.5
gi|76563908 hypothetical protein LOC169436 [Homo sapiens] 29 5.9
gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate... 28 7.7
>gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo
sapiens]
Length = 303
Score = 597 bits (1538), Expect = e-171
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MAAVAVLRAFGASGPMCLRRGPWAQLPARFCSRDPAGAGRRESEPRPTSARQLDGIRNIV 60
MAAVAVLRAFGASGPMCLRRGPWAQLPARFCSRDPAGAGRRESEPRPTSARQLDGIRNIV
Sbjct: 1 MAAVAVLRAFGASGPMCLRRGPWAQLPARFCSRDPAGAGRRESEPRPTSARQLDGIRNIV 60
Query: 61 LSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDY 120
LSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDY
Sbjct: 61 LSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDY 120
Query: 121 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVG 180
HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVG
Sbjct: 121 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVG 180
Query: 181 LFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKI 240
LFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKI
Sbjct: 181 LFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKI 240
Query: 241 ASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWSH 300
ASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWSH
Sbjct: 241 ASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWSH 300
Query: 301 EPV 303
EPV
Sbjct: 301 EPV 303
>gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratase 1
precursor [Homo sapiens]
Length = 290
Score = 127 bits (319), Expect = 1e-29
Identities = 81/238 (34%), Positives = 122/238 (51%), Gaps = 4/238 (1%)
Query: 59 IVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGR 118
I L+ PK N L ++ L + + + I+++ F++G D+KE+ +
Sbjct: 50 IQLNRPKALNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQ 109
Query: 119 DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVN 178
D ++ F K H+ PVIA VNG A GC+L CDI A +K+ FA P +
Sbjct: 110 DCYSSKFL---KHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEIL 166
Query: 179 VGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIA 237
+G G L RAV + +A+EM+ TG+ ISAQ+A GL+SK+ P L EE ++ A
Sbjct: 167 IGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCA 226
Query: 238 RKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRK 295
KIAS S+ VV++ K + L L + A D +EG+TAF++KRK
Sbjct: 227 EKIASNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRK 284
>gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase
precursor [Homo sapiens]
Length = 339
Score = 87.4 bits (215), Expect = 1e-17
Identities = 85/302 (28%), Positives = 134/302 (44%), Gaps = 25/302 (8%)
Query: 19 RRGP--WAQ--LPARFCSRDPAGAGRRESEPRPTSARQLD----GIRNIVLSNPKKRNTL 70
R GP WAQ +PA G R L+ GI + ++ +N+L
Sbjct: 44 RAGPAIWAQGWVPAAGGPAPKRGYSSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSL 103
Query: 71 SLAMLKSLQSDILHDADSNDLKV--IIISAEGP-VFSSGHDLKELTEEQGRDYHAEVFQT 127
S ++K L + DA +D KV III +E P +F +G DLKE + +EV
Sbjct: 104 SKNLIKMLSKAV--DALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS----SEVGPF 157
Query: 128 CSK---VMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCS 184
SK V+ I N PVP IA ++GLA G +L +CDI VA+ + + +
Sbjct: 158 VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG 217
Query: 185 TPGV-ALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMR----IARK 239
G L RA+ +A E++F+ + +EA GL+S V+ + + + R +AR+
Sbjct: 218 GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLARE 277
Query: 240 IASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWS 299
+ + K + + DL T + + +D EG+ AF +KR P +
Sbjct: 278 FLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK 337
Query: 300 HE 301
E
Sbjct: 338 GE 339
>gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
Length = 544
Score = 85.1 bits (209), Expect = 7e-17
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 16/259 (6%)
Query: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R R+ DG +I+LS + N+L+ +++ +QS L A ++D K++++SA G VF
Sbjct: 288 RDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQS-ALSTAAADDSKLVLLSAVGSVFC 346
Query: 105 SGHD----LKELTEEQGRDYH--AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLV 158
G D ++ LT+++ R+ AE + + + P+I VNG A G ++
Sbjct: 347 CGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKK---PIIVAVNGPAIGLGASIL 403
Query: 159 ASCDIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEAL 215
CD+ A++K+ F TP G CST V + + A EML +G ++AQEA
Sbjct: 404 PLCDVVWANEKAWFQTPYTTFGQSPDGCST--VMFPKIMGGASANEMLLSGRKLTAQEAC 461
Query: 216 LHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMV 275
GL+S+V +E M +++AS + V+ KA + +L A + +
Sbjct: 462 GKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLK 521
Query: 276 DNLALRDGQEGITAFLQKR 294
G + + +LQ++
Sbjct: 522 KIWGSAQGMDSMLKYLQRK 540
>gi|221136756 chromodomain protein, Y chromosome-like isoform d
[Homo sapiens]
Length = 412
Score = 85.1 bits (209), Expect = 7e-17
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 16/259 (6%)
Query: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R R+ DG +I+LS + N+L+ +++ +QS L A ++D K++++SA G VF
Sbjct: 156 RDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQS-ALSTAAADDSKLVLLSAVGSVFC 214
Query: 105 SGHD----LKELTEEQGRDYH--AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLV 158
G D ++ LT+++ R+ AE + + + P+I VNG A G ++
Sbjct: 215 CGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKK---PIIVAVNGPAIGLGASIL 271
Query: 159 ASCDIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEAL 215
CD+ A++K+ F TP G CST V + + A EML +G ++AQEA
Sbjct: 272 PLCDVVWANEKAWFQTPYTTFGQSPDGCST--VMFPKIMGGASANEMLLSGRKLTAQEAC 329
Query: 216 LHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMV 275
GL+S+V +E M +++AS + V+ KA + +L A + +
Sbjct: 330 GKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLK 389
Query: 276 DNLALRDGQEGITAFLQKR 294
G + + +LQ++
Sbjct: 390 KIWGSAQGMDSMLKYLQRK 408
>gi|221136753 chromodomain protein, Y chromosome-like isoform d
[Homo sapiens]
Length = 412
Score = 85.1 bits (209), Expect = 7e-17
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 16/259 (6%)
Query: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R R+ DG +I+LS + N+L+ +++ +QS L A ++D K++++SA G VF
Sbjct: 156 RDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQS-ALSTAAADDSKLVLLSAVGSVFC 214
Query: 105 SGHD----LKELTEEQGRDYH--AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLV 158
G D ++ LT+++ R+ AE + + + P+I VNG A G ++
Sbjct: 215 CGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKK---PIIVAVNGPAIGLGASIL 271
Query: 159 ASCDIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEAL 215
CD+ A++K+ F TP G CST V + + A EML +G ++AQEA
Sbjct: 272 PLCDVVWANEKAWFQTPYTTFGQSPDGCST--VMFPKIMGGASANEMLLSGRKLTAQEAC 329
Query: 216 LHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMV 275
GL+S+V +E M +++AS + V+ KA + +L A + +
Sbjct: 330 GKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLK 389
Query: 276 DNLALRDGQEGITAFLQKR 294
G + + +LQ++
Sbjct: 390 KIWGSAQGMDSMLKYLQRK 408
>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
Length = 506
Score = 82.8 bits (203), Expect = 3e-16
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 15/229 (6%)
Query: 46 RPTSARQLDGIRNIVLSNPKK-RNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R R+ +G +I+LS+ N L+ ++K ++ L +A ++D K++++SA G VF
Sbjct: 250 RDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRR-ALCNAATDDSKLLLLSAVGSVFC 308
Query: 105 SGHDLKELTEEQGRDYHAEVFQTCSKVMMHIR---NHPVPVIAMVNGLATAAGCQLVASC 161
SG D L D E + + ++ P++ +NG A G ++ C
Sbjct: 309 SGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLC 368
Query: 162 DIAVASDKSSFATPGVNVGLFCSTPGVALARAVPR----KVALEMLFTGEPISAQEALLH 217
DI AS+K+ F TP + L TP + P+ +A EMLF G ++AQEA
Sbjct: 369 DIVWASEKAWFQTPYATIRL---TPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSR 425
Query: 218 GLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKA---TFYKQLPQDL 263
GL+S+V +E M +++AS S V+ K +F K + +D+
Sbjct: 426 GLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDV 474
>gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Homo
sapiens]
Length = 364
Score = 78.2 bits (191), Expect = 8e-15
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 15/214 (7%)
Query: 54 DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELT 113
DGI I+ + PKK+N ++ M + L A +D + +++ G +SSG+DL T
Sbjct: 118 DGITKIMFNRPKKKNAINTEMYHEIMR-ALKAASKDDSIITVLTGNGDYYSSGNDLTNFT 176
Query: 114 E------EQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVAS 167
+ E+ +A + + + + P P+IA+VNG A L+ D AS
Sbjct: 177 DIPPGGVEEKAKNNAVLLREFVGCFI---DFPKPLIAVVNGPAVGISVTLLGLFDAVYAS 233
Query: 168 DKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVV 224
D+++F TP ++G CS+ + + A EML G+ ++A EA GL+++V
Sbjct: 234 DRATFHTPFSHLGQSPEGCSS--YTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF 291
Query: 225 PEAELQEETMRIARKIASLSRPVVSLGKATFYKQ 258
P++ Q+E + A L + + K K+
Sbjct: 292 PDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKR 325
>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
Length = 541
Score = 75.9 bits (185), Expect = 4e-14
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 10/215 (4%)
Query: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R ++ DG IVLS ++N L+ ++K + + L+ A ++D K+++ SA G VF
Sbjct: 285 RDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVN-ALNSAAADDSKLVLFSAAGSVFC 343
Query: 105 SGHDLKELTEEQGRDYHA---EVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASC 161
G D D + E+ T + P++ VNG A G ++ C
Sbjct: 344 CGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC 403
Query: 162 DIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEALLHG 218
D+ A++K+ F TP G CS+ + + + + A EML G ++A+EA G
Sbjct: 404 DLVWANEKAWFQTPYTTFGQSPDGCSS--ITFPKMMGKASANEMLIAGRKLTAREACAKG 461
Query: 219 LLSKVVPEAELQEETMRIARKIASLSRPVVSLGKA 253
L+S+V +E M +++AS + V+ KA
Sbjct: 462 LVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKA 496
>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
Length = 541
Score = 75.9 bits (185), Expect = 4e-14
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 10/215 (4%)
Query: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R ++ DG IVLS ++N L+ ++K + + L+ A ++D K+++ SA G VF
Sbjct: 285 RDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVN-ALNSAAADDSKLVLFSAAGSVFC 343
Query: 105 SGHDLKELTEEQGRDYHA---EVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASC 161
G D D + E+ T + P++ VNG A G ++ C
Sbjct: 344 CGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC 403
Query: 162 DIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEALLHG 218
D+ A++K+ F TP G CS+ + + + + A EML G ++A+EA G
Sbjct: 404 DLVWANEKAWFQTPYTTFGQSPDGCSS--ITFPKMMGKASANEMLIAGRKLTAREACAKG 461
Query: 219 LLSKVVPEAELQEETMRIARKIASLSRPVVSLGKA 253
L+S+V +E M +++AS + V+ KA
Sbjct: 462 LVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKA 496
>gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Homo
sapiens]
Length = 261
Score = 75.5 bits (184), Expect = 5e-14
Identities = 78/290 (26%), Positives = 124/290 (42%), Gaps = 47/290 (16%)
Query: 16 MCLRRGPWAQLPARFCSRDPAGAGRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAML 75
+CL R PW L AR C+ D A AG E + R + GI I+++ P RN L +
Sbjct: 5 LCLLR-PWRPLRARGCASDGA-AGGSEIQVRALAGPD-QGITEILMNRPSARNALGNVFV 61
Query: 76 KSLQSDILHDADSNDLKVIII-SAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMH 134
L + + ++V++ S VF +G DLKE EQ + VF +
Sbjct: 62 SELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKE--REQMSEAEVGVF------VQR 113
Query: 135 IRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAV 194
+R ++N +A++A L+ + T G+ PG + +
Sbjct: 114 LRG-------LMNDIASSAVMGLIET-------------TRGL-------LPGAGGTQRL 146
Query: 195 PR----KVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRP---- 246
PR +A E++FTG +S EA + GL++ V + E + + AR +A P
Sbjct: 147 PRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQAPI 206
Query: 247 VVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKP 296
V LGK + D+ + + N+ RD EG+ AF +KR P
Sbjct: 207 AVRLGKVAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREKRTP 256
>gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein
[Homo sapiens]
Length = 328
Score = 74.7 bits (182), Expect = 9e-14
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 46 RPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSS 105
R TSA++ + ++ L+ P KRN ++ + + + D + ++IS G +F++
Sbjct: 59 RVTSAQK--HVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTA 116
Query: 106 GHDLKELTEE----QGRD------YHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGC 155
G DL ++ + +G D Y ++ + I P PVIA V+G G
Sbjct: 117 GIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGV 176
Query: 156 QLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPR-----KVALEMLFTGEPIS 210
LV +CDI + + F V+VGL V + +P+ + E+ FT +
Sbjct: 177 DLVTACDIRYCAQDAFFQVKEVDVGL---AADVGTLQRLPKVIGNQSLVNELAFTARKMM 233
Query: 211 AQEALLHGLLSKVVPEAELQ-EETMRIARKIASLSRPVVSLGK 252
A EAL GL+S+V P+ E+ + + +A +I+S S V K
Sbjct: 234 ADEALGSGLVSRVFPDKEVMLDAALALAAEISSKSPVAVQSTK 276
>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b
[Homo sapiens]
Length = 554
Score = 73.9 bits (180), Expect = 2e-13
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Query: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R ++ DG IVLS ++N L+ ++K + + L+ A ++D K+++ SA G VF
Sbjct: 284 RDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVN-ALNSAAADDSKLVLFSAAGSVFC 342
Query: 105 SGHDLKELTEEQGRDYHA---EVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASC 161
G D + + + E+ T + P++ VNG A G ++ C
Sbjct: 343 CGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC 402
Query: 162 DIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEALLHG 218
D+ A++K+ F TP G CS+ + + + + A EML G ++A+EA G
Sbjct: 403 DLVWANEKAWFQTPYTTFGQSPDGCSS--ITFPKMMGKASANEMLIAGRKLTAREACAKG 460
Query: 219 LLSKVVPEAELQEETMRIARKIASLSRPVVSLGKA 253
L+S+V +E M +++AS + V+ KA
Sbjct: 461 LVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKA 495
>gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform
a [Homo sapiens]
Length = 540
Score = 73.9 bits (180), Expect = 2e-13
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Query: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R ++ DG IVLS ++N L+ ++K + + L+ A ++D K+++ SA G VF
Sbjct: 284 RDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVN-ALNSAAADDSKLVLFSAAGSVFC 342
Query: 105 SGHDLKELTEEQGRDYHA---EVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASC 161
G D + + + E+ T + P++ VNG A G ++ C
Sbjct: 343 CGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC 402
Query: 162 DIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEALLHG 218
D+ A++K+ F TP G CS+ + + + + A EML G ++A+EA G
Sbjct: 403 DLVWANEKAWFQTPYTTFGQSPDGCSS--ITFPKMMGKASANEMLIAGRKLTAREACAKG 460
Query: 219 LLSKVVPEAELQEETMRIARKIASLSRPVVSLGKA 253
L+S+V +E M +++AS + V+ KA
Sbjct: 461 LVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKA 495
>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
sapiens]
Length = 554
Score = 73.9 bits (180), Expect = 2e-13
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Query: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R ++ DG IVLS ++N L+ ++K + + L+ A ++D K+++ SA G VF
Sbjct: 284 RDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVN-ALNSAAADDSKLVLFSAAGSVFC 342
Query: 105 SGHDLKELTEEQGRDYHA---EVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASC 161
G D + + + E+ T + P++ VNG A G ++ C
Sbjct: 343 CGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC 402
Query: 162 DIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEALLHG 218
D+ A++K+ F TP G CS+ + + + + A EML G ++A+EA G
Sbjct: 403 DLVWANEKAWFQTPYTTFGQSPDGCSS--ITFPKMMGKASANEMLIAGRKLTAREACAKG 460
Query: 219 LLSKVVPEAELQEETMRIARKIASLSRPVVSLGKA 253
L+S+V +E M +++AS + V+ KA
Sbjct: 461 LVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKA 495
>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
sapiens]
Length = 540
Score = 73.9 bits (180), Expect = 2e-13
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Query: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
R ++ DG IVLS ++N L+ ++K + + L+ A ++D K+++ SA G VF
Sbjct: 284 RDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVN-ALNSAAADDSKLVLFSAAGSVFC 342
Query: 105 SGHDLKELTEEQGRDYHA---EVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASC 161
G D + + + E+ T + P++ VNG A G ++ C
Sbjct: 343 CGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC 402
Query: 162 DIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEALLHG 218
D+ A++K+ F TP G CS+ + + + + A EML G ++A+EA G
Sbjct: 403 DLVWANEKAWFQTPYTTFGQSPDGCSS--ITFPKMMGKASANEMLIAGRKLTAREACAKG 460
Query: 219 LLSKVVPEAELQEETMRIARKIASLSRPVVSLGKA 253
L+S+V +E M +++AS + V+ KA
Sbjct: 461 LVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKA 495
>gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A
dehydrogenase [Homo sapiens]
Length = 723
Score = 67.8 bits (164), Expect = 1e-11
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 15/187 (8%)
Query: 59 IVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGR 118
I L NP N +S +L+ ++ + + +K I+I FS+G D++ + +
Sbjct: 14 IRLRNPPV-NAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFSAPRTF 72
Query: 119 DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVN 178
T V+ I+ + PV+A + G+A G +L C +A ++ P V
Sbjct: 73 GL------TLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPEVT 126
Query: 179 VGLFCSTPGVALARAVPR----KVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETM 234
+GL PG + +PR AL+++ +G I A EAL G+L KVV ++ EE +
Sbjct: 127 LGLL---PGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVV-NSDPVEEAI 182
Query: 235 RIARKIA 241
R A++++
Sbjct: 183 RFAQRVS 189
>gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Homo
sapiens]
Length = 227
Score = 63.5 bits (153), Expect = 2e-10
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 14/185 (7%)
Query: 83 LHDADSNDLKVIIISAEGPVFSSGHDLKELTE------EQGRDYHAEVFQTCSKVMMHIR 136
L A +D + +++ G +SSG+DL T+ E+ +A + + +
Sbjct: 9 LKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFI--- 65
Query: 137 NHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLF---CSTPGVALARA 193
+ P P+IA+VNG A L+ D ASD+++F TP ++G CS+ +
Sbjct: 66 DFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSS--YTFPKI 123
Query: 194 VPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKA 253
+ A EML G+ ++A EA GL+++V P++ Q+E + A L + + K
Sbjct: 124 MSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKE 183
Query: 254 TFYKQ 258
K+
Sbjct: 184 VIRKR 188
>gi|62530384 dodecenoyl-Coenzyme A delta isomerase precursor [Homo
sapiens]
Length = 302
Score = 63.5 bits (153), Expect = 2e-10
Identities = 74/310 (23%), Positives = 127/310 (40%), Gaps = 27/310 (8%)
Query: 1 MAAVAVLRAFGASGPMCLRRGPWAQLPARFCSRDPAGAGRRESEPRPTSARQL------D 54
MA VA +R + LR G A+LP R AG + R S R L
Sbjct: 1 MALVASVRV---PARVLLRAG--ARLPGAALGRTERAAGGGDGARRFGSQRVLVEPDAGA 55
Query: 55 GIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP-VFSSGHDLKELT 113
G+ + NP N+LSL L L + + + +I++++ P VFS+G DL E+
Sbjct: 56 GVAVMKFKNPPV-NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 114
Query: 114 EEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFA 173
Y A ++ ++ + + + +++ +NG A GC + +CD + +D
Sbjct: 115 GRSPAHY-AGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILAD----- 168
Query: 174 TPGVNVGLFCSTPGV--------ALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVP 225
P +GL + G+ L + + A L G EAL G++ +VVP
Sbjct: 169 NPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVP 228
Query: 226 EAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQE 285
E ++Q + + ++ L KA K L T Q V ++ Q+
Sbjct: 229 EEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQK 288
Query: 286 GITAFLQKRK 295
+ +L++ K
Sbjct: 289 SLQMYLERLK 298
>gi|20127408 mitochondrial trifunctional protein, alpha subunit
precursor [Homo sapiens]
Length = 763
Score = 59.7 bits (143), Expect = 3e-09
Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 66 KRNTLSLAMLKSLQSDILHDADSNDL--KVIIISAEGPVFSSGHDLKELTEEQGRDYHAE 123
K NTLS L S S+++++ ++D ++IS++ F +G D+ L + +
Sbjct: 60 KVNTLSKE-LHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACKTLQEVTQ 118
Query: 124 VFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCD--IAVASDKSSFATPGVNVGL 181
+ Q +++ + P++A +NG G ++ SC IA K+ TP V +G
Sbjct: 119 LSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTVLGTPEVLLG- 177
Query: 182 FCSTPGVALARAVPRKV----ALEMLFTGEPISAQEALLHGLLSKVV----PEAELQEET 233
+ PG + +P+ V AL+M+ TG I A A GL+ ++V P + EE
Sbjct: 178 --ALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVEPLGPGLKPPEE- 234
Query: 234 MRIARKIASLSRPVVSLGKATFYKQL--PQDLGTAYYLTSQAM 274
R I L ++ K K++ +D G LT+ AM
Sbjct: 235 ----RTIEYLEEVAITFAKGLADKKISPKRDKGLVEKLTAYAM 273
>gi|37594469 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 2
[Homo sapiens]
Length = 338
Score = 55.1 bits (131), Expect = 8e-08
Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 3/174 (1%)
Query: 59 IVLSNPKKRNTLSLAMLKSLQSDILH-DADSNDLKVIIISAEGPVFSSGHDLKELTE-EQ 116
I L+ PK N L+L M++ + + + D +II A G F +G D++ ++E E+
Sbjct: 49 ITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEK 108
Query: 117 GRDYHAEVFQTCSKVMMH-IRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATP 175
+ A VF ++ + + + P +A+++G+ G L VA++K FA P
Sbjct: 109 AKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMP 168
Query: 176 GVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAEL 229
+GLF G + K+ + TG + ++ G+ + V +L
Sbjct: 169 ETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKL 222
>gi|37594471 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 1
[Homo sapiens]
Length = 386
Score = 55.1 bits (131), Expect = 8e-08
Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 3/174 (1%)
Query: 59 IVLSNPKKRNTLSLAMLKSLQSDILH-DADSNDLKVIIISAEGPVFSSGHDLKELTE-EQ 116
I L+ PK N L+L M++ + + + D +II A G F +G D++ ++E E+
Sbjct: 49 ITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEK 108
Query: 117 GRDYHAEVFQTCSKVMMH-IRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATP 175
+ A VF ++ + + + P +A+++G+ G L VA++K FA P
Sbjct: 109 AKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMP 168
Query: 176 GVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAEL 229
+GLF G + K+ + TG + ++ G+ + V +L
Sbjct: 169 ETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKL 222
>gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isoform
1 [Homo sapiens]
Length = 301
Score = 52.4 bits (124), Expect = 5e-07
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Query: 54 DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELT 113
+GI + L+NP + N S M+ L ++ + + K +I+ FSSG DL +
Sbjct: 56 NGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVK 115
Query: 114 EEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFA 173
+ V + P+ +A+V G A G + +CD + + +S
Sbjct: 116 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIR 175
Query: 174 TPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAE 228
+G+ S G L + + AL++L + ++ AL G++ +V+ ++
Sbjct: 176 FVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSD 231
>gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isoform
5 [Homo sapiens]
Length = 307
Score = 52.4 bits (124), Expect = 5e-07
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Query: 54 DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELT 113
+GI + L+NP + N S M+ L ++ + + K +I+ FSSG DL +
Sbjct: 62 NGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVK 121
Query: 114 EEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFA 173
+ V + P+ +A+V G A G + +CD + + +S
Sbjct: 122 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIR 181
Query: 174 TPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAE 228
+G+ S G L + + AL++L + ++ AL G++ +V+ ++
Sbjct: 182 FVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSD 237
>gi|134152674 rabaptin, RAB GTPase binding effector protein 1
isoform 2 [Homo sapiens]
Length = 829
Score = 32.3 bits (72), Expect = 0.53
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 194 VPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAE-LQEETMRIARKIASLSRPVVSLGK 252
V K+ E+LF E I A++ L L + E E +EE I+ A L R V G+
Sbjct: 698 VEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQ 757
Query: 253 ATFYKQLPQDLGTAYYLTSQAMVDNLALRD 282
AT + + ++ A L ++ V RD
Sbjct: 758 ATVEQLMFEEKNKAQRLQTELDVSEQVQRD 787
>gi|50593027 enoyl Coenzyme A hydratase domain containing 1 isoform
2 [Homo sapiens]
Length = 145
Score = 31.2 bits (69), Expect = 1.2
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 54 DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDL 109
+GI + L+NP + N S M+ L ++ + + K +I+ FSSG DL
Sbjct: 56 NGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDL 111
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 29.3 bits (64), Expect = 4.5
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 10 FGASGPMCLRRGPWAQLPARFCSRDPAGAGRRESEP-RPTSA------RQLDGIRNIVLS 62
FG SGP GP + LPAR ++P G G + P P A L G R S
Sbjct: 62 FGGSGP-----GPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQS 116
Query: 63 NPKK 66
+PK+
Sbjct: 117 DPKQ 120
>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 29.3 bits (64), Expect = 4.5
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 8 RAFGASGPM-CLRRGPWAQLPARFCSRDPAGAGRRESEPRPTSARQLD 54
R G SGP R P + PA R PA G SEP T R L+
Sbjct: 177 RTQGQSGPRESPRASPGSAAPAMASVRGPARDGATRSEPHATEIRTLE 224
>gi|76563908 hypothetical protein LOC169436 [Homo sapiens]
Length = 680
Score = 28.9 bits (63), Expect = 5.9
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 94 IIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAA 153
+++ EG SG L + T + RD EV + +++H+ ++ + +V+ A
Sbjct: 584 VVVQEEG---GSGLSLIKETYQLHRD-DPEVVENVGMLLVHLASYEEILPELVSSSMKAL 639
Query: 154 GCQLVASCDIAVASDKSSFATPGVNVG----LFCSTPG 187
++ ++ SD S+F+ PG+ G L C+T G
Sbjct: 640 LQEIKERFTSSLVSDSSAFSKPGLPPGGSPQLGCTTSG 677
>gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
[Homo sapiens]
Length = 1043
Score = 28.5 bits (62), Expect = 7.7
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 189 ALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEA--------ELQEETMRIARKI 240
ALA +P ++LE++ P +L GL +VP E + E +++
Sbjct: 61 ALAPRLPHNLSLELVVAAPPARDPASLTRGLCQALVPPGVAALLAFPEARPELLQLHFLA 120
Query: 241 ASLSRPVVSL 250
A+ PV+SL
Sbjct: 121 AATETPVLSL 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,028,599
Number of Sequences: 37866
Number of extensions: 467417
Number of successful extensions: 1381
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1328
Number of HSP's gapped (non-prelim): 31
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.