Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 30425370
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
sapiens]
(253 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo sapi... 527 e-150
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 322 2e-88
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 322 2e-88
gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2 ... 162 2e-40
gi|8923613 membrane-associated RING-CH protein I [Homo sapiens] 84 1e-16
gi|50539414 cellular modulator of immune recognition isoform 7 [... 82 3e-16
gi|50539412 cellular modulator of immune recognition isoform 6 [... 82 3e-16
gi|50539410 cellular modulator of immune recognition isoform 8 [... 82 3e-16
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 65 4e-11
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 64 2e-10
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 63 2e-10
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 61 8e-10
gi|12383066 axotrophin [Homo sapiens] 50 2e-06
gi|154937342 ring finger protein 190 [Homo sapiens] 49 5e-06
gi|154937340 ring finger protein 190 [Homo sapiens] 49 5e-06
gi|56711322 ring finger protein 43 [Homo sapiens] 35 0.063
gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens] 32 0.41
gi|239755070 PREDICTED: similar to proprotein convertase subtili... 31 0.91
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 31 0.91
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 31 0.91
gi|58331204 ring finger protein 150 [Homo sapiens] 31 0.91
gi|29788758 ring finger protein 130 [Homo sapiens] 31 0.91
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 31 1.2
gi|231573214 zinc finger protein 294 [Homo sapiens] 31 1.2
gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens] 31 1.2
gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens] 31 1.2
gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens] 31 1.2
gi|239750729 PREDICTED: hypothetical protein XP_002347517 [Homo ... 30 2.0
gi|21389515 ring finger protein 145 [Homo sapiens] 29 3.4
gi|4827022 contactin 2 precursor [Homo sapiens] 29 4.5
>gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
sapiens]
Length = 253
Score = 527 bits (1358), Expect = e-150
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 60
MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
Sbjct: 1 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 60
Query: 61 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
Sbjct: 61 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
Query: 121 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL 180
AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
Sbjct: 121 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL 180
Query: 181 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLG 240
EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLG
Sbjct: 181 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLG 240
Query: 241 LHSVKRNSKETVV 253
LHSVKRNSKETVV
Sbjct: 241 LHSVKRNSKETVV 253
>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 322 bits (825), Expect = 2e-88
Identities = 163/253 (64%), Positives = 192/253 (75%), Gaps = 7/253 (2%)
Query: 1 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 60
MTT C HLP L DC+ S A K VE G G PQYV QV+++DG+LLSTV+R L
Sbjct: 1 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD 56
Query: 61 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
T S D P CRICHEG++ E LLSPC CTGTLG +H+SCLE WLSSSNTSYCELCH F
Sbjct: 57 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 121 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL 180
AVE++PRPL EWL++PGP+ EKRTL DMVCFLFITPLA ISGWLCLRGA DHL S+L
Sbjct: 114 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL 173
Query: 181 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLG 240
EAVGLIALT+ALFTIY+ WTLVSFRYHC+LY+EWR+TNQ+V L I ++ + Q S L
Sbjct: 174 EAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLA 233
Query: 241 LHSVKRNSKETVV 253
+K+ ++ET V
Sbjct: 234 AGLLKKVAEETPV 246
>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 322 bits (825), Expect = 2e-88
Identities = 163/253 (64%), Positives = 192/253 (75%), Gaps = 7/253 (2%)
Query: 1 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 60
MTT C HLP L DC+ S A K VE G G PQYV QV+++DG+LLSTV+R L
Sbjct: 1 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD 56
Query: 61 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
T S D P CRICHEG++ E LLSPC CTGTLG +H+SCLE WLSSSNTSYCELCH F
Sbjct: 57 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 121 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL 180
AVE++PRPL EWL++PGP+ EKRTL DMVCFLFITPLA ISGWLCLRGA DHL S+L
Sbjct: 114 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL 173
Query: 181 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLG 240
EAVGLIALT+ALFTIY+ WTLVSFRYHC+LY+EWR+TNQ+V L I ++ + Q S L
Sbjct: 174 EAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLA 233
Query: 241 LHSVKRNSKETVV 253
+K+ ++ET V
Sbjct: 234 AGLLKKVAEETPV 246
>gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
[Homo sapiens]
Length = 176
Score = 162 bits (411), Expect = 2e-40
Identities = 83/131 (63%), Positives = 95/131 (72%), Gaps = 7/131 (5%)
Query: 1 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA 60
MTT C HLP L DC+ S A K VE G G PQYV QV+++DG+LLSTV+R L
Sbjct: 1 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD 56
Query: 61 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
T S D P CRICHEG++ E LLSPC CTGTLG +H+SCLE WLSSSNTSYCELCH F
Sbjct: 57 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 121 AVERKPRPLVE 131
AVE++PRPL E
Sbjct: 114 AVEKRPRPLTE 124
Score = 51.2 bits (121), Expect = 8e-07
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 200 TLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLGLHSVKRNSKETVV 253
T VSFRYHC+LY+EWR+TNQ+V L I ++ + Q S L +K+ ++ET V
Sbjct: 123 TEVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKVAEETPV 176
>gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]
Length = 272
Score = 84.0 bits (206), Expect = 1e-16
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 70 MCRICH-EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRP 128
+CRICH EG + L++PC CTGTL +H+SCL W+ SS+T CELC + F +E K +P
Sbjct: 62 ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIMETKLKP 121
Query: 129 LVEWLRNPGPQHEKRTLF 146
L +W + E+R +F
Sbjct: 122 LRKWEKLQMTTSERRKIF 139
>gi|50539414 cellular modulator of immune recognition isoform 7
[Homo sapiens]
Length = 291
Score = 82.4 bits (202), Expect = 3e-16
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 52 LSTVVRTLATQSPFNDRPMCRICH-EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNT 110
+S+ RT T S + +CRICH EG + L++PC CTG+L +H++CL+ W+ SS+T
Sbjct: 64 VSSFSRTSITPS---SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120
Query: 111 SYCELCHFRFAVERKPRPLVEWLRNPGPQHEKRTL 145
CELC + F +E K +PL +W + E+R +
Sbjct: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKI 155
>gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
Length = 291
Score = 82.4 bits (202), Expect = 3e-16
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 52 LSTVVRTLATQSPFNDRPMCRICH-EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNT 110
+S+ RT T S + +CRICH EG + L++PC CTG+L +H++CL+ W+ SS+T
Sbjct: 64 VSSFSRTSITPS---SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120
Query: 111 SYCELCHFRFAVERKPRPLVEWLRNPGPQHEKRTL 145
CELC + F +E K +PL +W + E+R +
Sbjct: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKI 155
>gi|50539410 cellular modulator of immune recognition isoform 8
[Homo sapiens]
Length = 291
Score = 82.4 bits (202), Expect = 3e-16
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 52 LSTVVRTLATQSPFNDRPMCRICH-EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNT 110
+S+ RT T S + +CRICH EG + L++PC CTG+L +H++CL+ W+ SS+T
Sbjct: 64 VSSFSRTSITPS---SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120
Query: 111 SYCELCHFRFAVERKPRPLVEWLRNPGPQHEKRTL 145
CELC + F +E K +PL +W + E+R +
Sbjct: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKI 155
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 65.5 bits (158), Expect = 4e-11
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 69 PMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV 122
P CRIC +G Q +LLSPC C G++ H+ CL W+S + CELC+F++ V
Sbjct: 108 PQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQV 161
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 63.5 bits (153), Expect = 2e-10
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 69 PMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV 122
P+CRIC +G Q +LLSPC C G++ H+ CL W+S CELC++++ V
Sbjct: 161 PLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHV 214
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 63.2 bits (152), Expect = 2e-10
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 67 DRPMCRICH-EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
+ +CR+C EG+ ++ L PC CTG++ IH+ CL WL S YCELC RFA
Sbjct: 5 EEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA 60
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 61.2 bits (147), Expect = 8e-10
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 68 RPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV 122
+P+C+IC +G+ Q +LL+PC C G++ H+ CL W+S + CELC +R+ V
Sbjct: 167 QPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHV 221
>gi|12383066 axotrophin [Homo sapiens]
Length = 704
Score = 49.7 bits (117), Expect = 2e-06
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 10 PEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQ-SPFNDR 68
P + + T + V + + +G+ ++D + L + +L + S +
Sbjct: 490 PALGSNLTDNVMITVDIIPSGWNSADGKSDKTKSAPSRDPERLQKIKESLLLEDSEEEEG 549
Query: 69 PMCRICH--EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTS--------YCELC 116
+CRIC SS L+ PC+CTG+L +H+ C++ WL + S CELC
Sbjct: 550 DLCRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELC 607
>gi|154937342 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 48.5 bits (114), Expect = 5e-06
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 48 DGQLLSTVVRTLATQSPFNDRPMCRICH--EGSSQEDLLSPCECTGTLGTIHRSCLEHWL 105
D + L + +L + + +CRIC GS LL PC C G+L +H+ CL+ WL
Sbjct: 636 DPEKLKKLQESLLEEDSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWL 695
Query: 106 SSSNTS--------YCELC 116
TS CE+C
Sbjct: 696 KVKITSGADLGAVKTCEMC 714
>gi|154937340 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 48.5 bits (114), Expect = 5e-06
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 48 DGQLLSTVVRTLATQSPFNDRPMCRICH--EGSSQEDLLSPCECTGTLGTIHRSCLEHWL 105
D + L + +L + + +CRIC GS LL PC C G+L +H+ CL+ WL
Sbjct: 636 DPEKLKKLQESLLEEDSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWL 695
Query: 106 SSSNTS--------YCELC 116
TS CE+C
Sbjct: 696 KVKITSGADLGAVKTCEMC 714
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 35.0 bits (79), Expect = 0.063
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 63 SPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHF 118
S + P+C IC E S+ L C L HR+C++ WL T C LC F
Sbjct: 264 SSCSSAPVCAICLEEFSEGQELRVISC---LHEFHRNCVDPWLHQHRT--CPLCMF 314
>gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]
Length = 278
Score = 32.3 bits (72), Expect = 0.41
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 70 MCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWL------SSSNTSYCELCHFRFAV 122
+C E + + PC C G+ +H++CL+ W+ +S+ C C+ + +
Sbjct: 16 VCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLI 74
>gi|239755070 PREDICTED: similar to proprotein convertase
subtilisin/kexin type 5 [Homo sapiens]
Length = 853
Score = 31.2 bits (69), Expect = 0.91
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 94 GTIHRSCLEHWLSSSNTSYCELCH 117
G HRSC +H+ +T CE CH
Sbjct: 591 GECHRSCPDHYYVEQSTQTCERCH 614
>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
sapiens]
Length = 853
Score = 31.2 bits (69), Expect = 0.91
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 94 GTIHRSCLEHWLSSSNTSYCELCH 117
G HRSC +H+ +T CE CH
Sbjct: 591 GECHRSCPDHYYVEQSTQTCERCH 614
>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
sapiens]
Length = 853
Score = 31.2 bits (69), Expect = 0.91
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 94 GTIHRSCLEHWLSSSNTSYCELCH 117
G HRSC +H+ +T CE CH
Sbjct: 591 GECHRSCPDHYYVEQSTQTCERCH 614
>gi|58331204 ring finger protein 150 [Homo sapiens]
Length = 438
Score = 31.2 bits (69), Expect = 0.91
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 61 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELC 116
T+S F++ C +C EG D++ C H+SC++ WL T C +C
Sbjct: 271 TESDFDN---CAVCIEGYKPNDVVRILPCRHLF---HKSCVDPWLLDHRT--CPMC 318
>gi|29788758 ring finger protein 130 [Homo sapiens]
Length = 419
Score = 31.2 bits (69), Expect = 0.91
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELC 116
C +C E Q D++ C H+SC++ WLS T C +C
Sbjct: 264 CAVCIESYKQNDVVRILPCKHVF---HKSCVDPWLSEHCT--CPMC 304
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 30.8 bits (68), Expect = 1.2
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 51 LLSTVVRTLATQSPFNDRP--MCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSS 108
L S+ T ++++ D MC IC G E+ L+ CE G +H C+ W
Sbjct: 421 LSSSSTSTSSSENSIKDEEEQMCPICLLGMLDEESLTVCE-DGCRNKLHHHCMSIWAEEC 479
Query: 109 NTS----YCELCHFRF 120
+ C LC ++
Sbjct: 480 RRNREPLICPLCRSKW 495
>gi|231573214 zinc finger protein 294 [Homo sapiens]
Length = 1812
Score = 30.8 bits (68), Expect = 1.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 97 HRSCLEHWLSSSNTSYCELCHFRF 120
H +CL W +SSN S C LC F
Sbjct: 1788 HSACLYKWFTSSNKSTCPLCRETF 1811
>gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens]
Length = 169
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 66 NDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
N +C +C E D L C C HR CL WL C LC+
Sbjct: 94 NLHELCAVCLEDFKPRDELGICPCK---HAFHRKCLIKWLEVRKV--CPLCN 140
>gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 66 NDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
N +C +C E D L C C HR CL WL C LC+
Sbjct: 73 NLHELCAVCLEDFKPRDELGICPCK---HAFHRKCLIKWLEVRKV--CPLCN 119
>gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 66 NDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
N +C +C E D L C C HR CL WL C LC+
Sbjct: 73 NLHELCAVCLEDFKPRDELGICPCK---HAFHRKCLIKWLEVRKV--CPLCN 119
>gi|239750729 PREDICTED: hypothetical protein XP_002347517 [Homo
sapiens]
Length = 263
Score = 30.0 bits (66), Expect = 2.0
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 22 PVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEGSSQE 81
P+ T + G V + Q ++ D S+ + ATQ P C + H + +
Sbjct: 124 PLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNPSQ 183
Query: 82 DLLSPC------ECTGTLGTIHRSCLEHWLSSSNTSY-CELCHFRFA 121
D+ PC C ++HR LE L SS + C L R A
Sbjct: 184 DVTVPCPVPPPPPCCHPRLSLHRPALEDLLLSSEANLTCTLTGLRDA 230
>gi|21389515 ring finger protein 145 [Homo sapiens]
Length = 691
Score = 29.3 bits (64), Expect = 3.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 70 MCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
+C IC++ + +++PC H CL+ WL T C LCH
Sbjct: 564 ICAICYQ-DMKSAVITPCS-----HFFHAGCLKKWLYVQET--CPLCH 603
>gi|4827022 contactin 2 precursor [Homo sapiens]
Length = 1040
Score = 28.9 bits (63), Expect = 4.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 121 AVERKPRPLVEWLRNPGP---QHEKRTLFGDM 149
A KPRP V WLRN P Q+ L GD+
Sbjct: 349 AAAGKPRPTVRWLRNGEPLASQNRVEVLAGDL 380
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,384,467
Number of Sequences: 37866
Number of extensions: 462168
Number of successful extensions: 1511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 47
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.