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Search of human proteins with 122937185
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937185 hypothetical protein LOC57189 [Homo sapiens]
(455 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937185 hypothetical protein LOC57189 [Homo sapiens] 942 0.0
gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens] 45 1e-04
gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens] 40 0.004
gi|46275835 hypothetical protein LOC404636 [Homo sapiens] 40 0.004
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 39 0.010
gi|147902746 MEX3A protein [Homo sapiens] 38 0.017
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 37 0.048
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo... 36 0.082
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 35 0.11
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 35 0.18
gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.24
gi|8922149 downstream neighbor of SON [Homo sapiens] 34 0.24
gi|7656888 angiopoietin-like 3 precursor [Homo sapiens] 33 0.41
gi|149274643 solute carrier family 25, member 28 [Homo sapiens] 33 0.41
gi|33186901 hypothetical protein LOC359845 [Homo sapiens] 33 0.41
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 33 0.53
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 33 0.53
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 33 0.53
gi|19924099 synapsin I isoform Ia [Homo sapiens] 33 0.53
gi|19924097 synapsin I isoform Ib [Homo sapiens] 33 0.53
gi|12751477 forkhead box L2 [Homo sapiens] 33 0.70
gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens] 33 0.70
gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo ... 33 0.70
gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo ... 33 0.70
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 33 0.70
gi|222537747 hypothetical protein LOC342979 [Homo sapiens] 32 0.91
gi|110735445 forkhead box F1 [Homo sapiens] 32 0.91
>gi|122937185 hypothetical protein LOC57189 [Homo sapiens]
Length = 455
Score = 942 bits (2434), Expect = 0.0
Identities = 455/455 (100%), Positives = 455/455 (100%)
Query: 1 MVEQGDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEV 60
MVEQGDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEV
Sbjct: 1 MVEQGDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEV 60
Query: 61 LLQPGRLELGDVEEDQVVAVFVVTFDPRSGNMVEWCLPQDIDLEGVEFKSMASGSHKIQS 120
LLQPGRLELGDVEEDQVVAVFVVTFDPRSGNMVEWCLPQDIDLEGVEFKSMASGSHKIQS
Sbjct: 61 LLQPGRLELGDVEEDQVVAVFVVTFDPRSGNMVEWCLPQDIDLEGVEFKSMASGSHKIQS 120
Query: 121 DFIYFRKGPFFGLACFANMPVESELERGARMKSVGILSPSYTLLYRYMHFLENQVRHQLE 180
DFIYFRKGPFFGLACFANMPVESELERGARMKSVGILSPSYTLLYRYMHFLENQVRHQLE
Sbjct: 121 DFIYFRKGPFFGLACFANMPVESELERGARMKSVGILSPSYTLLYRYMHFLENQVRHQLE 180
Query: 181 MPGHYSHLAAFYEDKKGVLHAGPGRGSSLPPVYWLPSIHRYMYPEMKITHPAGCMSQFIK 240
MPGHYSHLAAFYEDKKGVLHAGPGRGSSLPPVYWLPSIHRYMYPEMKITHPAGCMSQFIK
Sbjct: 181 MPGHYSHLAAFYEDKKGVLHAGPGRGSSLPPVYWLPSIHRYMYPEMKITHPAGCMSQFIK 240
Query: 241 FFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYCCCCLANVSLPGIGGTIPESKPFFY 300
FFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYCCCCLANVSLPGIGGTIPESKPFFY
Sbjct: 241 FFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYCCCCLANVSLPGIGGTIPESKPFFY 300
Query: 301 VNVADIESLEVEVSYVACTTEKIFEEKRELYDVYVDNQNVKTHHDHLQPLLKINSADREK 360
VNVADIESLEVEVSYVACTTEKIFEEKRELYDVYVDNQNVKTHHDHLQPLLKINSADREK
Sbjct: 301 VNVADIESLEVEVSYVACTTEKIFEEKRELYDVYVDNQNVKTHHDHLQPLLKINSADREK 360
Query: 361 YRRLNEQRQMLLYSQEVEEDYNPCEEDLFVLFFLEQNNRIFQTLLEVSASQDKTLTAEHA 420
YRRLNEQRQMLLYSQEVEEDYNPCEEDLFVLFFLEQNNRIFQTLLEVSASQDKTLTAEHA
Sbjct: 361 YRRLNEQRQMLLYSQEVEEDYNPCEEDLFVLFFLEQNNRIFQTLLEVSASQDKTLTAEHA 420
Query: 421 RGMGLDPQGDRSFLLDLLEAYGIDVMLVIDNPCCP 455
RGMGLDPQGDRSFLLDLLEAYGIDVMLVIDNPCCP
Sbjct: 421 RGMGLDPQGDRSFLLDLLEAYGIDVMLVIDNPCCP 455
>gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens]
Length = 648
Score = 45.4 bits (106), Expect = 1e-04
Identities = 50/221 (22%), Positives = 85/221 (38%), Gaps = 48/221 (21%)
Query: 72 VEEDQVVAVFVVTFDPRSGNMVEWCLPQDIDLEG------------VEFKSMASGSHKIQ 119
V V+ + VV F + G VE+ P I +G + F ++ G+H Q
Sbjct: 11 VPRGPVLHIVVVGFHHKKGCQVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQ 70
Query: 120 SDFIYFRKGP-------FFGLACFANMPV------ESELERGARMKSVGILS--PSYTLL 164
D ++F P FG++C+ + ++++ R KSV +LS P Y LL
Sbjct: 71 EDTVFFHLPPRNGNGATVFGISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLL 130
Query: 165 YRYMHFLENQVRHQLEMPGHYSHLAAFYEDKKGVLHAGPGRGSSLPPVYWLPSIHRYMYP 224
+ + + + + S L YE L GS ++ + P
Sbjct: 131 QAKLQLITHAYFEEKDF-SQISILKELYEHMNSSLGGASLEGS---------QVYLGLSP 180
Query: 225 EMKITHPAGCMSQFIKFFGEQILILWKFALLRKRILIFSPP 265
+ H F ++LIL+K LL K++L + P
Sbjct: 181 RDLVLH-----------FRHKVLILFKLILLEKKVLFYISP 210
>gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]
Length = 581
Score = 40.0 bits (92), Expect = 0.004
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 3 EQGDAAPLLRWAEGPAVSLP--QAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEV 60
E DA +L E A SL + + GRGGGGG R +PP P P +
Sbjct: 109 ETSDALLVLEGLESEAESLETNSCSEEELSSPGRGGGGGGRLLLQPPGPELPPVPFPLQD 168
Query: 61 LLQPGRLELGDVEEDQ 76
L+ GRL G+ ++ Q
Sbjct: 169 LVPLGRLSRGEQQQQQ 184
>gi|46275835 hypothetical protein LOC404636 [Homo sapiens]
Length = 357
Score = 40.0 bits (92), Expect = 0.004
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 29/217 (13%)
Query: 232 AGCMSQFIKFFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYCCCCLANVSLPGI--- 288
AG + + FG + +IL +L+KRI+++ P V + +LP +
Sbjct: 156 AGSIKDIVSQFGMETVILHTALMLKKRIVVYHPKIEAVQEF---------TRTLPALVWH 206
Query: 289 --GGTIPESKPFFYVNVADIESLEVEVSYVACTTEKIFEEKRELYDVYVDNQNVKTHHDH 346
TI S + ++N ++E+L++ YVA + + +LYDV+V N+
Sbjct: 207 RQDWTILHS--YVHLNADELEALQMCTGYVAGFVDLEVSNRPDLYDVFV---NLAESEIT 261
Query: 347 LQPLLKINSADREKYRRLNEQRQMLLYSQEVEEDYNPCEEDLFVLFFLEQNNRIFQTLL- 405
+ PL K A + ++ E Q+++ S E E E + + IF L
Sbjct: 262 IAPLAKEAMAMGKLHK---EMGQLIVQSAEDPEK----SESHVIQDIALKTREIFTNLAP 314
Query: 406 --EVSASQDKTLTAEHARGMGLDPQGDRSFLLDLLEA 440
EVSA +K + A P +FL L A
Sbjct: 315 FSEVSADGEKRVLNLEALKQKRFPPATENFLYHLAAA 351
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 38.9 bits (89), Expect = 0.010
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 12 RWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEVLLQPGRLELGD 71
RW S P G G GG GG PAA PP R P P P + L+P + D
Sbjct: 1060 RWPRSDPESQPLLGPGAGGAGGTGGAGGGAPAAPPPCRAAP--PPCPYLDLEPSPSDSED 1117
Query: 72 VE 73
E
Sbjct: 1118 SE 1119
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 38.1 bits (87), Expect = 0.017
Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 19 VSLPQAPQPQAGGWGRGGGGG--ARPAAEPPRRREPEEPAAP 58
+ L + P P AG G GGGGG A+PAA PP+ P PAAP
Sbjct: 48 LGLGEPPAPTAGEDGGGGGGGAPAQPAA-PPQPAPPPPPAAP 88
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 36.6 bits (83), Expect = 0.048
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 28 QAGGWGRGGGGGARPAA---EPPRRREPEEPAAPE------VLLQPGRLELGDV 72
+ GG G GGGGG R E PRRR E A+P +PGR LG V
Sbjct: 26 RGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATTRPGRWSLGSV 79
>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
sapiens]
Length = 623
Score = 35.8 bits (81), Expect = 0.082
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 3 EQGDAAPLLRWAEGPAVSLPQAPQPQA--GGWGRGGGGGARPA--AEPPRRREPEEPAAP 58
E+ L AEG A S P + P+ W G G A P A P R PEEPAAP
Sbjct: 47 EESPPQSLASAAEGAATSPPSSGGPRVVERQWEAGSAGAASPEELASPEERACPEEPAAP 106
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 35.4 bits (80), Expect = 0.11
Identities = 20/46 (43%), Positives = 21/46 (45%)
Query: 22 PQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEVLLQPGRL 67
PQ PQP G G G A PA+ PP PA P V L RL
Sbjct: 56 PQPPQPPPGPASASGPGAAGPASSPPPAGPGPGPALPAVRLSLVRL 101
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 35.0 bits (79), Expect = 0.14
Identities = 25/57 (43%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 4 QGDAAPLLRW----AEGPAVSLPQAPQPQA----GGWGRGGGGGARPAAEPPRRREP 52
+G AA W AE V P P A GG GGGGGARP+ PPR R+P
Sbjct: 168 RGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGARPS--PPRARQP 222
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 35.0 bits (79), Expect = 0.14
Identities = 25/57 (43%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 4 QGDAAPLLRW----AEGPAVSLPQAPQPQA----GGWGRGGGGGARPAAEPPRRREP 52
+G AA W AE V P P A GG GGGGGARP+ PPR R+P
Sbjct: 168 RGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGARPS--PPRARQP 222
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 35.0 bits (79), Expect = 0.14
Identities = 25/57 (43%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 4 QGDAAPLLRW----AEGPAVSLPQAPQPQA----GGWGRGGGGGARPAAEPPRRREP 52
+G AA W AE V P P A GG GGGGGARP+ PPR R+P
Sbjct: 168 RGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGARPS--PPRARQP 222
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 34.7 bits (78), Expect = 0.18
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 18 AVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEVLLQPGRLELGDVEEDQV 77
AV P +P A GR R A+ PP R P+ P+ QPG LG V D
Sbjct: 830 AVQAPLPREPLALA-GRTAPAQPRAASAPPTDRSPQSPSQG-ARRQPGAAPLGKVLVDPE 887
Query: 78 VAVFV-----------VTFDPRSGNMVEWCLP 98
+ V FDP SG VE LP
Sbjct: 888 SGRYYFVEAPRQPRLRVLFDPESGQYVEVLLP 919
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 34.3 bits (77), Expect = 0.24
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 17 PAVSLP-QAPQPQAGGWGRGGGGG-ARPAAEPPRR-REPEEPAAPEVLLQP 64
PA P AP+P G R GGGG RP PRR P PA P L+P
Sbjct: 78 PAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRP 128
>gi|8922149 downstream neighbor of SON [Homo sapiens]
Length = 566
Score = 34.3 bits (77), Expect = 0.24
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 15/53 (28%)
Query: 21 LPQAPQPQAGGWGRGGGGG---------------ARPAAEPPRRREPEEPAAP 58
LP P P AGG G G GGG R AAEPP E+P AP
Sbjct: 53 LPLRPFPAAGGRGGGSGGGPAAARRNPFARLDNRPRVAAEPPDGPAREQPEAP 105
>gi|7656888 angiopoietin-like 3 precursor [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.41
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 320 TEKIFEEKREL----YDVYVDNQNVKTH----HDHLQPLLKINSADREKYRRLNEQRQML 371
T +I EE++EL Y + V N+ VK + L+ LL+ ++K + L EQ L
Sbjct: 89 TSEIKEEEKELRRTTYKLQVKNEEVKNMSLELNSKLESLLEEKILLQQKVKYLEEQLTNL 148
Query: 372 LYSQEVEEDYNPCEEDLFVLFFLEQNNRIFQTLLEVSASQDKTLTAEHARGMGLDPQGDR 431
+ +Q ++ E + F+E+ + + LL+ Q K L +H++ ++ Q R
Sbjct: 149 IQNQPETPEH---PEVTSLKTFVEKQDNSIKDLLQTVEDQYKQLNQQHSQIKEIENQLRR 205
Query: 432 SFLLDLLE 439
+ + + E
Sbjct: 206 TSIQEPTE 213
>gi|149274643 solute carrier family 25, member 28 [Homo sapiens]
Length = 364
Score = 33.5 bits (75), Expect = 0.41
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 14 AEGPAVSLPQAPQPQA--GGW-----GRGGGGGARPAAEPPRRREPEEPAAPEVL 61
A GPA ++P A GW GRG GGG A PP R++P+ E L
Sbjct: 12 AGGPAAGPGRSPGESALLDGWLQRGVGRGAGGGEAGACRPPVRQDPDSGPDYEAL 66
>gi|33186901 hypothetical protein LOC359845 [Homo sapiens]
Length = 214
Score = 33.5 bits (75), Expect = 0.41
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 15 EGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEVLLQPGRLEL 69
+ P LP +P P WG GGG A P EP+ AA P L L
Sbjct: 25 DSPDSGLPPSPSPSH--WGLAAGGGGGERAAAPGTLEPDAAAATPAAPSPASLPL 77
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 33.1 bits (74), Expect = 0.53
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 7 AAPLLRWA-EGPAVSLPQAPQPQAGGWGRG---GGGG----ARPAAE----PPRRREPEE 54
A P W EG +P+A GGWG G GG G ARPA+E PR+
Sbjct: 40 AKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHT 99
Query: 55 PAAPEV 60
P AP V
Sbjct: 100 PEAPGV 105
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 33.1 bits (74), Expect = 0.53
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 7 AAPLLRWA-EGPAVSLPQAPQPQAGGWGRG---GGGG----ARPAAE----PPRRREPEE 54
A P W EG +P+A GGWG G GG G ARPA+E PR+
Sbjct: 40 AKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHT 99
Query: 55 PAAPEV 60
P AP V
Sbjct: 100 PEAPGV 105
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 33.1 bits (74), Expect = 0.53
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 7 AAPLLRWA-EGPAVSLPQAPQPQAGGWGRG---GGGG----ARPAAE----PPRRREPEE 54
A P W EG +P+A GGWG G GG G ARPA+E PR+
Sbjct: 40 AKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHT 99
Query: 55 PAAPEV 60
P AP V
Sbjct: 100 PEAPGV 105
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 33.1 bits (74), Expect = 0.53
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 20 SLPQAPQPQAG----GWGR-----GGGGGARPAAEPPRRREPEEPAAP 58
S PQ P QA G GR GG GA PAA PP P+ A P
Sbjct: 513 SAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGP 560
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 33.1 bits (74), Expect = 0.53
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 20 SLPQAPQPQAG----GWGR-----GGGGGARPAAEPPRRREPEEPAAP 58
S PQ P QA G GR GG GA PAA PP P+ A P
Sbjct: 513 SAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGP 560
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 32.7 bits (73), Expect = 0.70
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 7 AAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREP 52
A LL G V P+ P P G G GGGGG P P ++ P
Sbjct: 12 AGALLAPETGRTVKEPEGPPPSPGKGG-GGGGGTAPEKPDPAQKPP 56
>gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]
Length = 410
Score = 32.7 bits (73), Expect = 0.70
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 4 QGDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAP 58
QG A RW G + A G GR GGG ARPA P RR P P P
Sbjct: 38 QGGAGLHPRWVWGGSGG--------AVGTGRRGGGAARPA--PVRRGSPSSPGEP 82
>gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo
sapiens]
Length = 410
Score = 32.7 bits (73), Expect = 0.70
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 4 QGDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAP 58
QG A RW G + A G GR GGG ARPA P RR P P P
Sbjct: 38 QGGAGLHPRWVWGGSGG--------AVGTGRRGGGAARPA--PVRRGSPSSPGEP 82
>gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo
sapiens]
Length = 410
Score = 32.7 bits (73), Expect = 0.70
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 4 QGDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAP 58
QG A RW G + A G GR GGG ARPA P RR P P P
Sbjct: 38 QGGAGLHPRWVWGGSGG--------AVGTGRRGGGAARPA--PVRRGSPSSPGEP 82
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 32.7 bits (73), Expect = 0.70
Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 27 PQAGGWGR---GGGGGARPAAEPPRRR 50
P AGGW R G G ARPA PP RR
Sbjct: 28 PSAGGWERAERGRGAAARPATGPPPRR 54
>gi|222537747 hypothetical protein LOC342979 [Homo sapiens]
Length = 673
Score = 32.3 bits (72), Expect = 0.91
Identities = 23/57 (40%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 5 GDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAE--PPRRREPEEPAAPE 59
GDA PLL AE PA P QP G G A P P R+ EP P E
Sbjct: 603 GDATPLL--AETPAPEQPAECQPLLQGEGPSANPSAHPVPTYAPARQPEPSAPTEGE 657
>gi|110735445 forkhead box F1 [Homo sapiens]
Length = 379
Score = 32.3 bits (72), Expect = 0.91
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 20 SLPQAPQPQAGGWGRGGGGGAR---PAAEPPRR--------REPEEP 55
S P+ QP GG G GGGGG PA+ P + R PE+P
Sbjct: 3 SAPEKQQPPHGGGGGGGGGGGAAMDPASSGPSKAKKTNAGIRRPEKP 49
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,071,106
Number of Sequences: 37866
Number of extensions: 1062122
Number of successful extensions: 6628
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 6282
Number of HSP's gapped (non-prelim): 383
length of query: 455
length of database: 18,247,518
effective HSP length: 106
effective length of query: 349
effective length of database: 14,233,722
effective search space: 4967568978
effective search space used: 4967568978
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.