Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM45A Sequence: fasta or formatted (357aa) NCBI GI: 46275835
Description:

hypothetical protein LOC404636

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         32           3
 C cysteine            1.7          6           2
 D aspartate           4.5         16           1
 E glutamate           7.8         28           2
 F phenylalanine       4.5         16           1
 G glycine             3.9         14           1
 H histidine           3.1         11           1
 I isoleucine          5.9         21           1
 K lysine              7.0         25           2
 L leucine            11.5         41           3
 M methionine          3.4         12           2
 N asparagine          3.1         11           1
 P proline             3.6         13           2
 Q glutamine           3.4         12           1
 R arginine            3.9         14           2
 S serine              5.3         19           2
 T threonine           6.4         23           2
 V valine              7.3         26           2
 W tryptophan          1.4          5           1
 Y tyrosine            3.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC404636 
KIAA1147              0.022   hypothetical protein LOC57189 
LOC643677             0.007   hypothetical protein LOC643677 
LOC643677             0.007   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.007   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.007   PREDICTED: hypothetical protein LOC643677 
BNC2                  0.006   basonuclin 2 
ATRN                  0.006   attractin isoform 2 
ATRN                  0.006   attractin isoform 1 
DCST2                 0.006   DC-STAMP domain containing 2 
AVL9                  0.006   AVL9 homolog (S. cerevisiase) 
BIRC6                 0.004   baculoviral IAP repeat-containing 6 
UBTF                  0.004   upstream binding transcription factor, RNA polymera...
UBTF                  0.004   upstream binding transcription factor, RNA polymera...
UBTF                  0.004   upstream binding transcription factor, RNA polymerase...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press