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Search of human proteins with 12232485
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens] 384 e-107
gi|27477081 interleukin 25 isoform 2 [Homo sapiens] 350 4e-97
gi|7019435 interleukin 17C [Homo sapiens] 64 9e-11
gi|7657228 interleukin 17B precursor [Homo sapiens] 51 6e-07
gi|19923715 interleukin 17D precursor [Homo sapiens] 47 9e-06
gi|16418375 interleukin 17F precursor [Homo sapiens] 44 1e-04
gi|4504651 interleukin 17A precursor [Homo sapiens] 39 0.003
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.64
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.64
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.64
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 30 1.4
gi|16306552 semaphorin Y [Homo sapiens] 29 1.9
gi|33359221 dyslexia susceptibility 2-like [Homo sapiens] 29 2.4
gi|239753036 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|239747603 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|239741468 PREDICTED: hypothetical protein isoform 1 [Homo sap... 28 3.2
gi|239740972 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|31543806 thrombospondin 4 precursor [Homo sapiens] 28 3.2
gi|45545421 ectonucleotide pyrophosphatase/phosphodiesterase 7 [... 28 3.2
gi|194097442 protein tyrosine phosphatase, receptor type, N poly... 28 4.2
gi|194097440 protein tyrosine phosphatase, receptor type, N poly... 28 4.2
gi|194097438 protein tyrosine phosphatase, receptor type, N poly... 28 4.2
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 28 4.2
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 28 4.2
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ... 28 5.4
gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo ... 28 5.4
gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo ... 28 5.4
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 28 5.4
gi|18087845 cell division cycle associated 5 [Homo sapiens] 27 7.1
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 27 9.3
>gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens]
Length = 177
Score = 384 bits (985), Expect = e-107
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MRERPRLGEDSSLISLFLQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVP 60
MRERPRLGEDSSLISLFLQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVP
Sbjct: 1 MRERPRLGEDSSLISLFLQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVP 60
Query: 61 PLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQT 120
PLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQT
Sbjct: 61 PLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQT 120
Query: 121 GSHMDPRGNSELLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG 177
GSHMDPRGNSELLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG
Sbjct: 121 GSHMDPRGNSELLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG 177
>gi|27477081 interleukin 25 isoform 2 [Homo sapiens]
Length = 161
Score = 350 bits (898), Expect = 4e-97
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 19 QVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASE 78
QVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASE
Sbjct: 3 QVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASE 62
Query: 79 DGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQT 138
DGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQT
Sbjct: 63 DGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQT 122
Query: 139 VFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG 177
VFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG
Sbjct: 123 VFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRVMG 161
>gi|7019435 interleukin 17C [Homo sapiens]
Length = 197
Score = 63.5 bits (153), Expect = 9e-11
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 83 NSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYR 142
+ R+ISPWRY +D D +R PQ L A CLC C+ +TG NS L + V R
Sbjct: 102 HQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAAL-NSVRLLQSLLVLRR 160
Query: 143 RPCHGEKG---THKGYCLERRLYRVSLACVCVRPR 174
RPC + T + V + C CV PR
Sbjct: 161 RPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCVLPR 195
>gi|7657228 interleukin 17B precursor [Homo sapiens]
Length = 180
Score = 50.8 bits (120), Expect = 6e-07
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 83 NSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYR 142
N R++SPW Y ++ D +R+P DL ARCLC CV+ T + R + +Q R
Sbjct: 94 NKRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFT--MQEDRSMVSVPVFSQVPVRR 151
Query: 143 RPCHGEKGTHKGYCLERRLYR-VSLACVCV 171
R C T G C +R + +++ C C+
Sbjct: 152 RLCPPPPRT--GPCRQRAVMETIAVGCTCI 179
>gi|19923715 interleukin 17D precursor [Homo sapiens]
Length = 202
Score = 47.0 bits (110), Expect = 9e-06
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 56 TVPVPPLEPARPNRHPESCRASEDG---PLNSRAISPWRYELDRDLNRLPQDLYHARCLC 112
T+ + P E AR P R ++ P N R++SPW Y + D R P+ L A CLC
Sbjct: 57 TLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLC 116
Query: 113 PHCVSLQTGSHMDPRGNSELLYHNQTVFYRRP-CHGEKGTHKGYCLERRLYRVSLACVCV 171
C++ G D R S +Y V R P C G + + + + C CV
Sbjct: 117 RGCLTGLFGEE-DVRFRSAPVYMPTVVLRRTPACAGGRSVY-----TEAYVTIPVGCTCV 170
>gi|16418375 interleukin 17F precursor [Homo sapiens]
Length = 163
Score = 43.5 bits (101), Expect = 1e-04
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 72 ESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSE 131
E+ R S + SR+ SPW Y + D NR P ++ A+C C++ Q D NS
Sbjct: 64 ENQRVSMSRNIESRSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQ--GKEDISMNSV 121
Query: 132 LLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRP 173
+ V R+ +G + LE+ L V++ C CV P
Sbjct: 122 PIQQETLVVRRK----HQGCSVSFQLEKVL--VTVGCTCVTP 157
>gi|4504651 interleukin 17A precursor [Homo sapiens]
Length = 155
Score = 38.5 bits (88), Expect = 0.003
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 11 SSLISLFLQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRH 70
+SL+SL L +++ A+V T P C S+ ++ ++ L N +
Sbjct: 6 TSLVSLLL-LLSLEAIVKAGITIPRNPGCPNSEDKNFPRTVM-------VNLNIHNRNTN 57
Query: 71 PESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNS 130
R+S+ +R+ SPW + D R P ++ A+ C H + ++D NS
Sbjct: 58 TNPKRSSD---YYNRSTSPWNLHRNEDPERYPSVIWEAK--CRHLGCINADGNVDYHMNS 112
Query: 131 ELLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRV 175
+ V R P H + LE+ L VS+ C CV P V
Sbjct: 113 VPIQQEILVLRREPPH----CPNSFRLEKIL--VSVGCTCVTPIV 151
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 30.8 bits (68), Expect = 0.64
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 37 PSCCPSKGQDTSEELLRWSTVPVPPLE-----PARPNRHPESCR 75
P C P+ ++ L R P+PP E RP +HPE R
Sbjct: 216 PGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTR 259
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 30.8 bits (68), Expect = 0.64
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 37 PSCCPSKGQDTSEELLRWSTVPVPPLE-----PARPNRHPESCR 75
P C P+ ++ L R P+PP E RP +HPE R
Sbjct: 216 PGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTR 259
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 30.8 bits (68), Expect = 0.64
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 37 PSCCPSKGQDTSEELLRWSTVPVPPLE-----PARPNRHPESCR 75
P C P+ ++ L R P+PP E RP +HPE R
Sbjct: 216 PGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTR 259
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 40 CPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP 81
CP K + + W+ P P+ PA P+ H ++ GP
Sbjct: 1388 CPVKNRGIRDRDSSWAPPPREPVSPAGPHHHRPRMASTSGGP 1429
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 29.3 bits (64), Expect = 1.9
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 37 PSCCPSKGQD--TSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISP 89
P CP + + T EELLR+ P PP + A P PL SRA+ P
Sbjct: 754 PPGCPGQAVEVTTLEELLRYLHGPQPPRKGAEP-----------PAPLTSRALPP 797
>gi|33359221 dyslexia susceptibility 2-like [Homo sapiens]
Length = 1049
Score = 28.9 bits (63), Expect = 2.4
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 34 SHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYE 93
S W +CC QD++ + W + +RP +SCRA NS + +++
Sbjct: 84 SCWAACC----QDSACHVFWWLEGMCIQADCSRP----QSCRAFRTHSSNSMLVFLKKFQ 135
Query: 94 LDRDLNRLPQD 104
DL LP+D
Sbjct: 136 TADDLGFLPED 146
>gi|239753036 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 28.5 bits (62), Expect = 3.2
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 31 HTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP-LNSRAISP 89
H WPS CP+ G + T+ L P NR R + GP L S+ + P
Sbjct: 256 HNSLFWPSSCPAHGGQCRPKTSSSQTLQAHLLLPGGMNRPSFDLRTASAGPALASQGLFP 315
>gi|239747603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 28.5 bits (62), Expect = 3.2
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 31 HTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP-LNSRAISP 89
H WPS CP+ G + T+ L P NR R + GP L S+ + P
Sbjct: 256 HNSLFWPSSCPAHGGQCRPKTSSSQTLQAHLLLPGGMNRPSFDLRTASAGPALASQGLFP 315
>gi|239741468 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 352
Score = 28.5 bits (62), Expect = 3.2
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 31 HTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP-LNSRAISP 89
H WPS CP+ G + T+ L P NR R + GP L S+ + P
Sbjct: 256 HNSLFWPSSCPAHGGQCRPKTSSSQTLQAHLLLPGGMNRPSFDLRTASAGPALASQGLFP 315
>gi|239740972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 28.5 bits (62), Expect = 3.2
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 31 HTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGP-LNSRAISP 89
H WPS CP+ G + T+ L P NR R + GP L S+ + P
Sbjct: 293 HNSLFWPSSCPANGGQCRPKTSSSQTLQAHLLLPGGINRPSFDLRTASAGPALASQGLFP 352
>gi|31543806 thrombospondin 4 precursor [Homo sapiens]
Length = 961
Score = 28.5 bits (62), Expect = 3.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 7 LGEDSSLISLFLQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPAR 66
LGE L+ ++ +FL +T + +C P K Q + STV VPP PA
Sbjct: 234 LGEVKDLLRQQVKETSFLR-----NTIAECQACGPLKFQSPTP-----STV-VPPAPPAP 282
Query: 67 PNRHPESC 74
P R P C
Sbjct: 283 PTRPPRRC 290
>gi|45545421 ectonucleotide pyrophosphatase/phosphodiesterase 7
[Homo sapiens]
Length = 458
Score = 28.5 bits (62), Expect = 3.2
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 90 WRYELDRD---LNRLPQDLYHARCLCPHCVS--------LQTGSHMDPRGNSELLYHNQT 138
W Y+ D D L+ + +D AR + P V+ L TG +++ G +Y+N T
Sbjct: 43 WNYDQDVDTPNLDAMARDGVKARYMTPAFVTMTSPCHFTLVTGKYIENHGVVHNMYYNTT 102
Query: 139 VFYRRPCHGEKGTHK 153
+ P H G +
Sbjct: 103 SKVKLPYHATLGIQR 117
>gi|194097442 protein tyrosine phosphatase, receptor type, N
polypeptide 2 isoform 3 precursor [Homo sapiens]
Length = 986
Score = 28.1 bits (61), Expect = 4.2
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 37 PSCCPSKGQDTSEELLRW-STVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYELD 95
P P +G + LLR S +P P L PA P + P SED +S + L
Sbjct: 254 PPAPPGEGSLEPQYLLRAPSRMPRPLLAPAAPQKWPSPLGDSEDP--SSTGDGARIHTLL 311
Query: 96 RDLNRLPQDL 105
+DL R P ++
Sbjct: 312 KDLQRQPAEV 321
>gi|194097440 protein tyrosine phosphatase, receptor type, N
polypeptide 2 isoform 1 precursor [Homo sapiens]
Length = 1015
Score = 28.1 bits (61), Expect = 4.2
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 37 PSCCPSKGQDTSEELLRW-STVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYELD 95
P P +G + LLR S +P P L PA P + P SED +S + L
Sbjct: 254 PPAPPGEGSLEPQYLLRAPSRMPRPLLAPAAPQKWPSPLGDSEDP--SSTGDGARIHTLL 311
Query: 96 RDLNRLPQDL 105
+DL R P ++
Sbjct: 312 KDLQRQPAEV 321
>gi|194097438 protein tyrosine phosphatase, receptor type, N
polypeptide 2 isoform 2 precursor [Homo sapiens]
Length = 998
Score = 28.1 bits (61), Expect = 4.2
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 37 PSCCPSKGQDTSEELLRW-STVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYELD 95
P P +G + LLR S +P P L PA P + P SED +S + L
Sbjct: 237 PPAPPGEGSLEPQYLLRAPSRMPRPLLAPAAPQKWPSPLGDSEDP--SSTGDGARIHTLL 294
Query: 96 RDLNRLPQDL 105
+DL R P ++
Sbjct: 295 KDLQRQPAEV 304
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 28.1 bits (61), Expect = 4.2
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 41 PSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRA 86
P + E W+ P P A P R SC A E G S A
Sbjct: 152 PGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGA 197
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 28.1 bits (61), Expect = 4.2
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 41 PSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRA 86
P + E W+ P P A P R SC A E G S A
Sbjct: 152 PGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGA 197
>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 27.7 bits (60), Expect = 5.4
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 39 CCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWR 91
C Q ELL W PP P RP+ P R GP + SPWR
Sbjct: 122 CGLRTAQPAGFELLAWQHPQKPPGGPQRPS--PGGLR----GPRSLSGSSPWR 168
>gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 27.7 bits (60), Expect = 5.4
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 39 CCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWR 91
C Q ELL W PP P RP+ P R GP + SPWR
Sbjct: 122 CGLRTAQPAGFELLAWQHPQKPPGGPQRPS--PGGLR----GPRSLSGSSPWR 168
>gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 27.7 bits (60), Expect = 5.4
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 39 CCPSKGQDTSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSRAISPWR 91
C Q ELL W PP P RP+ P R GP + SPWR
Sbjct: 122 CGLRTAQPAGFELLAWQHPQKPPGGPQRPS--PGGLR----GPRSLSGSSPWR 168
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 27.7 bits (60), Expect = 5.4
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 30 THTYSHWPSCCPSKGQDTSEE-LLRWSTVPVPP--LEPARPNRHP-------ESCRASED 79
TH +S P P + T +L P+PP P R P S R ++
Sbjct: 54 THAFSENPRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPVGDGSSSRRCWDN 113
Query: 80 GPLNSRAISPWRYELDRDLNRLPQDLYHA 108
G +N R + ++ +DL RL QDL H+
Sbjct: 114 GRVNLRPVVQL-IDIMKDLTRLSQDLQHS 141
>gi|18087845 cell division cycle associated 5 [Homo sapiens]
Length = 252
Score = 27.3 bits (59), Expect = 7.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 47 TSEELLRWSTVPVPPLEPARPNRHPESCRASEDGPLNSR 85
T E+L + +VP P PN PE+ +S++G L++R
Sbjct: 98 TKEDLFKTHSVPATPTSTPVPN--PEAESSSKEGELDAR 134
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 26.9 bits (58), Expect = 9.3
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 58 PVPPLEPARPNRHPESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHAR 109
P+P L + RH E +A D N S E+ LN L QD+ H +
Sbjct: 1557 PLPILSSKKTRRHTEGMQADADD--NILDYSDGMEEIFGSLNSLKQDIEHMK 1606
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,091,531
Number of Sequences: 37866
Number of extensions: 395846
Number of successful extensions: 1148
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 45
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.