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Search of human proteins with 29501813
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29501813 ubiquitin fusion degradation 1-like isoform A [Homo
sapiens]
(307 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29501813 ubiquitin fusion degradation 1-like isoform A [Homo ... 627 e-180
gi|241982785 ubiquitin fusion degradation 1-like isoform B [Homo... 547 e-156
gi|27262638 sperm associated antigen 1 [Homo sapiens] 33 0.41
gi|27262636 sperm associated antigen 1 [Homo sapiens] 33 0.41
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens] 32 0.92
gi|7705823 N-acetyltransferase 5 isoform a [Homo sapiens] 30 2.7
gi|31563512 N-acetyltransferase 5 isoform b [Homo sapiens] 30 2.7
gi|38348236 zinc finger protein 497 [Homo sapiens] 30 2.7
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 29 6.0
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 29 6.0
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 29 6.0
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 29 6.0
gi|4758128 doublecortin-like kinase 1 [Homo sapiens] 28 7.8
gi|46275837 CCR4-NOT transcription complex, subunit 1 isoform b ... 28 7.8
gi|42716275 CCR4-NOT transcription complex, subunit 1 isoform a ... 28 7.8
>gi|29501813 ubiquitin fusion degradation 1-like isoform A [Homo
sapiens]
Length = 307
Score = 627 bits (1616), Expect = e-180
Identities = 307/307 (100%), Positives = 307/307 (100%)
Query: 1 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN 60
MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
Sbjct: 1 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN 60
Query: 61 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA 120
ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
Sbjct: 61 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA 120
Query: 121 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV 180
TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
Sbjct: 121 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV 180
Query: 181 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK 240
SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
Sbjct: 181 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK 240
Query: 241 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL 300
GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL
Sbjct: 241 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL 300
Query: 301 RKKGRKP 307
RKKGRKP
Sbjct: 301 RKKGRKP 307
>gi|241982785 ubiquitin fusion degradation 1-like isoform B [Homo
sapiens]
Length = 266
Score = 547 bits (1409), Expect = e-156
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN 60
MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
Sbjct: 1 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN 60
Query: 61 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA 120
ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
Sbjct: 61 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA 120
Query: 121 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV 180
TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
Sbjct: 121 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV 180
Query: 181 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK 240
SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
Sbjct: 181 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK 240
Query: 241 GVEPSPSPIKPGDIKRGIPNYEFKLG 266
GVEPSPSPIKPGDIKRGIPNYEFKLG
Sbjct: 241 GVEPSPSPIKPGDIKRGIPNYEFKLG 266
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 32.7 bits (73), Expect = 0.41
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 161 NYNEKIYEL-RVMETKPDKAVSIIECDMNV----------DFDAPLGYKEPERQVQHEES 209
NY + + +L +V+ P SIIE M + D AP ++ R+++ +E
Sbjct: 706 NYQKSLIDLNKVILLDP----SIIEAKMELEEVTRLLNLKDKTAPFNKEKERRKIEIQEV 761
Query: 210 TEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSPIKPGDIKRGIPNYEFKLGKI 268
EG+ + AGE+ + +KG + S SP P + PN ++ G+I
Sbjct: 762 NEGKEEPGRPAGEVSMGCLA--------SEKGGKSSRSPEDPEKLPIAKPNNAYEFGQI 812
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 32.7 bits (73), Expect = 0.41
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 161 NYNEKIYEL-RVMETKPDKAVSIIECDMNV----------DFDAPLGYKEPERQVQHEES 209
NY + + +L +V+ P SIIE M + D AP ++ R+++ +E
Sbjct: 706 NYQKSLIDLNKVILLDP----SIIEAKMELEEVTRLLNLKDKTAPFNKEKERRKIEIQEV 761
Query: 210 TEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSPIKPGDIKRGIPNYEFKLGKI 268
EG+ + AGE+ + +KG + S SP P + PN ++ G+I
Sbjct: 762 NEGKEEPGRPAGEVSMGCLA--------SEKGGKSSRSPEDPEKLPIAKPNNAYEFGQI 812
>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
Length = 496
Score = 31.6 bits (70), Expect = 0.92
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 194 PLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSPIKPG 252
P G+++ + H+ GE + EL F + S G L + +GV PSP PG
Sbjct: 85 PKGFRDSTGLLHHQVVHTGEKPYCCLVCELRFSSRSSLGRHLKRQHRGVLPSPLQPGPG 143
>gi|7705823 N-acetyltransferase 5 isoform a [Homo sapiens]
Length = 178
Score = 30.0 bits (66), Expect = 2.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 195 LGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSPIKPGDI 254
LGY +++ ++ GE D Y +A S D +KK + P P P++P DI
Sbjct: 126 LGYSVYRTVIEYYSASNGEPDEDAYDMR---KALSR-----DTEKKSIIPLPHPVRPEDI 177
Query: 255 K 255
+
Sbjct: 178 E 178
>gi|31563512 N-acetyltransferase 5 isoform b [Homo sapiens]
Length = 166
Score = 30.0 bits (66), Expect = 2.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 195 LGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSPIKPGDI 254
LGY +++ ++ GE D Y +A S D +KK + P P P++P DI
Sbjct: 114 LGYSVYRTVIEYYSASNGEPDEDAYDMR---KALSR-----DTEKKSIIPLPHPVRPEDI 165
Query: 255 K 255
+
Sbjct: 166 E 166
>gi|38348236 zinc finger protein 497 [Homo sapiens]
Length = 498
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 205 QHEESTEGEADHSGYAG-ELGFR--AFSGSGNRLDGKKKGVEPSPSPIKPG 252
Q +++T G AD G G ELG G+G R + + + PSP P +PG
Sbjct: 55 QRQQATLGAADEQGGPGRELGPADGGRDGAGPRSEPADRALRPSPLPEEPG 105
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 28.9 bits (63), Expect = 6.0
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 194 PLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGS-GNRLDGKKKGVEPS 245
PLGY P R V+ + G H G GE GF F G G + D + GV S
Sbjct: 627 PLGYPGP-RGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGS 678
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 28.9 bits (63), Expect = 6.0
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 194 PLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGS-GNRLDGKKKGVEPS 245
PLGY P R V+ + G H G GE GF F G G + D + GV S
Sbjct: 606 PLGYPGP-RGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGS 657
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 28.9 bits (63), Expect = 6.0
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 194 PLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGS-GNRLDGKKKGVEPS 245
PLGY P R V+ + G H G GE GF F G G + D + GV S
Sbjct: 713 PLGYPGP-RGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGS 764
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 28.9 bits (63), Expect = 6.0
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 152 LTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEESTE 211
L T D + I ++ +V ET P + D+N+ + + P+ +V +ES+
Sbjct: 1123 LQTDDNMEICTPDRSSPAKVEETSPLGNARLDTPDINIVLKQDMATEHPQAEVVKQESSM 1182
Query: 212 GEADHSGYAGELGFRAFS-GSGNRLDGKKKGVEPS 245
E+ G G+ + S S GKK+ E S
Sbjct: 1183 SESKVLGEVGKQDSSSASLASAGESTGKKEVAEKS 1217
>gi|4758128 doublecortin-like kinase 1 [Homo sapiens]
Length = 729
Score = 28.5 bits (62), Expect = 7.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 232 GNRLDGKKKGVEPSPSPIKPGDIKR 256
G++L + G PSPSP PG +++
Sbjct: 319 GSQLSTPRSGKSPSPSPTSPGSLRK 343
>gi|46275837 CCR4-NOT transcription complex, subunit 1 isoform b [Homo
sapiens]
Length = 1551
Score = 28.5 bits (62), Expect = 7.8
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 27/125 (21%)
Query: 52 ALDQLSRL-----NITYPMLFKLTNKNSDRMTHC--GVLEFVADEGICYLPHWMMQNLLL 104
A DQ R+ NI + F N + MT + E V +E ++P W+ Q L++
Sbjct: 1081 ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEE---FMP-WVSQYLVM 1136
Query: 105 EEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITNP---KAVLENALRNFACLTTGDVIAI 160
+ +V+ F +FLD + NP K VL RN L T D A
Sbjct: 1137 K------------RVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAA 1184
Query: 161 NYNEK 165
N++++
Sbjct: 1185 NFSDR 1189
>gi|42716275 CCR4-NOT transcription complex, subunit 1 isoform a [Homo
sapiens]
Length = 2376
Score = 28.5 bits (62), Expect = 7.8
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 27/125 (21%)
Query: 52 ALDQLSRL-----NITYPMLFKLTNKNSDRMTHC--GVLEFVADEGICYLPHWMMQNLLL 104
A DQ R+ NI + F N + MT + E V +E ++P W+ Q L++
Sbjct: 1081 ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEE---FMP-WVSQYLVM 1136
Query: 105 EEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITNP---KAVLENALRNFACLTTGDVIAI 160
+ +V+ F +FLD + NP K VL RN L T D A
Sbjct: 1137 K------------RVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAA 1184
Query: 161 NYNEK 165
N++++
Sbjct: 1185 NFSDR 1189
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,164,788
Number of Sequences: 37866
Number of extensions: 553189
Number of successful extensions: 1317
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 25
length of query: 307
length of database: 18,247,518
effective HSP length: 102
effective length of query: 205
effective length of database: 14,385,186
effective search space: 2948963130
effective search space used: 2948963130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.