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Search of human proteins with 28557711
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28557711 proline rich 15 [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28557711 proline rich 15 [Homo sapiens] 274 2e-74
gi|13236561 ATPase family, AAA domain containing 4 [Homo sapiens] 42 1e-04
gi|194294554 SET binding protein 1 isoform a [Homo sapiens] 40 5e-04
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 40 5e-04
gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo ... 39 9e-04
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 39 0.001
gi|122937271 WAS protein homolog associated with actin, golgi me... 39 0.001
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens] 39 0.001
gi|47132519 Ras association and pleckstrin homology domains 1 is... 38 0.002
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 38 0.002
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 37 0.003
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 37 0.003
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 37 0.003
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 37 0.003
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 37 0.004
gi|11415052 retinoid X receptor, beta [Homo sapiens] 37 0.004
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 37 0.004
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 37 0.004
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 37 0.004
gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 37 0.004
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 37 0.006
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 36 0.007
gi|197333868 T-box 2 [Homo sapiens] 36 0.010
gi|118402590 myosin XV [Homo sapiens] 36 0.010
gi|38261962 activating transcription factor 7 interacting protei... 36 0.010
gi|217416343 fibrosin-like 1 [Homo sapiens] 36 0.010
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 36 0.010
>gi|28557711 proline rich 15 [Homo sapiens]
Length = 129
Score = 274 bits (700), Expect = 2e-74
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MADSGDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQ 60
MADSGDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQ
Sbjct: 1 MADSGDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQ 60
Query: 61 HPNLLGGAGEPPKPDKLYGDKSGSSRRNLKISRSGRFKEKRKVRATLLPEAGRSPEEAGF 120
HPNLLGGAGEPPKPDKLYGDKSGSSRRNLKISRSGRFKEKRKVRATLLPEAGRSPEEAGF
Sbjct: 61 HPNLLGGAGEPPKPDKLYGDKSGSSRRNLKISRSGRFKEKRKVRATLLPEAGRSPEEAGF 120
Query: 121 PGDPHEDKQ 129
PGDPHEDKQ
Sbjct: 121 PGDPHEDKQ 129
>gi|13236561 ATPase family, AAA domain containing 4 [Homo sapiens]
Length = 103
Score = 42.4 bits (98), Expect = 1e-04
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 27/101 (26%)
Query: 13 WWKSLTNSRKKSKEAAV--GVPPPAQPAPGEPTPPAP----PSPDWTSSSRENQHPNLLG 66
WWK LT RKK V +P G+ PP P P+ D+ +
Sbjct: 7 WWK-LTFLRKKKSTPKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNT------------ 53
Query: 67 GAGEPPKPDKLYGDKSGSSRRNLKISRSGRFKEKRKVRATL 107
+ +K+ DKS + +++K+S SGRFKEK+KVRATL
Sbjct: 54 ------RLEKIV-DKS-TKGKHVKVSNSGRFKEKKKVRATL 86
>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
Length = 1596
Score = 40.0 bits (92), Expect = 5e-04
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 5 GDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNL 64
G GS+G W L+N+ K V P+P + PAPPS + +
Sbjct: 265 GKKGSAGNTWSQLSNNNKDLLLGGVA------PSPSSHSSPAPPSSSAECNGLQPLVDQD 318
Query: 65 LGGAGEPPKPDKLYGDKSGSSRRNL 89
GG EPP+P + G K SS++++
Sbjct: 319 GGGTKEPPEPPTV-GSKKKSSKKDV 342
Score = 35.4 bits (80), Expect = 0.013
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 24 SKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPK 73
++EA PPP P P P PP PP P + R + + +PP+
Sbjct: 1516 AREAPPLPPPPPPPLPPPPPPPLPPPPPLPKTPRGGKRKHKPQAPAQPPQ 1565
Score = 27.3 bits (59), Expect = 3.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 26 EAAVGVPPPAQPAPGEPTPPAPPSP 50
EA + + A P P P PP PP P
Sbjct: 1510 EAVIHMAREAPPLPPPPPPPLPPPP 1534
Score = 26.2 bits (56), Expect = 7.6
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 33 PPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKP 74
PP P P P PP P +P + Q P P +P
Sbjct: 1531 PPPPPPPLPPPPPLPKTPRGGKRKHKPQAPAQPPQQSPPQQP 1572
>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
sapiens]
Length = 954
Score = 40.0 bits (92), Expect = 5e-04
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 21/129 (16%)
Query: 2 ADSGDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPG-----EPTPPAPPSPDWTSSS 56
A++ D GSS P S + + VP PA+P+PG EPTP APP+ W +
Sbjct: 616 AEAEDGGSSVP-------PSPYSTPSYLSVPLPAEPSPGARAPWEPTPSAPPA-RWGHGA 667
Query: 57 RENQHPNLLGGAGEPPKPDKLYGDKSGSSRRNLKISRSGRFKEKRKVRATLLPEAGRSPE 116
R LLG A L G G + + +++R + P AGR P
Sbjct: 668 RRRCDLALLGCA-------TLLG-AVGLGADVAEARAADGEEQRRWLDGLFFPRAGRFPR 719
Query: 117 EAGFPGDPH 125
P PH
Sbjct: 720 GLSPPARPH 728
Score = 26.6 bits (57), Expect = 5.8
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 9/39 (23%)
Query: 21 RKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSREN 59
R S EAA PA P+P PP+PP+P T S N
Sbjct: 763 RSDSDEAA-----PAAPSP----PPSPPAPTPTPSPSTN 792
Score = 26.2 bits (56), Expect = 7.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 15 KSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSP 50
+SL S A PPP+ PAP PTP +P
Sbjct: 759 RSLLRSDSDEAAPAAPSPPPSPPAP-TPTPSPSTNP 793
>gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo
sapiens]
Length = 1214
Score = 39.3 bits (90), Expect = 9e-04
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 24/88 (27%)
Query: 27 AAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYGDKSGSSR 86
AA G PPP G P PP PP P+ +S S EP P KL
Sbjct: 3 AAAGAPPP-----GPPQPPPPPPPEESSDSEPE---------AEPGSPQKLI-------- 40
Query: 87 RNLKISRSGRFKEKRKVRATLLPEAGRS 114
K+S SG+ ++K ++ +L + S
Sbjct: 41 --RKVSTSGQIRQKTIIKEGMLTKQNNS 66
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 38.9 bits (89), Expect = 0.001
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 16 SLTNSRKKSKEAAVGVPP---PAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPP 72
SL S++ G PP PAQP P P PP PP P LG GEP
Sbjct: 1387 SLPARSPPSRQPPSGGPPEAPPAQPPPPPPPPPPPPQQPLPPPPNLEPAPPSLGDPGEPA 1446
Query: 73 KPDKLYGDKSGSSRRNLKISR-SGRFKEKRKVR 104
G +G S +N ++ S E+RK R
Sbjct: 1447 AHP---GPSTGPSTKNENVATLSVSSLERRKSR 1476
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 18 TNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDK 76
T+S+ + + PPP P P P PP PP +SSS+ H NL G P K D+
Sbjct: 628 THSKSSEELSLPPPPPPPPPPPPPPPPPPPPLRALSSSSQAATHQNL--GFRAPVKDDQ 684
>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
Length = 234
Score = 38.5 bits (88), Expect = 0.001
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 7 AGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDW 52
AG+S W + R++ + + G PPA P P P P A P DW
Sbjct: 84 AGTSALWRHLRSAHRRELESSGAGSSPPAAPCPPPPGPAAAPEGDW 129
>gi|47132519 Ras association and pleckstrin homology domains 1 isoform
1 [Homo sapiens]
Length = 1250
Score = 38.1 bits (87), Expect = 0.002
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 32 PPPAQPAPGEPTPP---APPSPDWTSS-SRENQHPNLLGGAGEPPKPDKLYGDKSGSSRR 87
PPP P P P PP A P+PD + S ++ + GG PP P +
Sbjct: 929 PPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQR---------NS 979
Query: 88 NLKISRSGRFKEKRKVRATLLPEAGRSPEEAGFP 121
++K S E ++ L P E+G P
Sbjct: 980 SIKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSP 1013
Score = 32.7 bits (73), Expect = 0.081
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 31 VPPPAQPAPGEPTPPAPPSPDWTSSS 56
+PPP P P P PP PP P S S
Sbjct: 628 LPPPPPPPPPPPPPPPPPPPPLPSQS 653
Score = 32.3 bits (72), Expect = 0.11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 32 PPPAQPAPGEPTPPAPPSPDWTSSSRENQHP 62
PPP P P P PP PP P ++ S + P
Sbjct: 632 PPPPPPPPPPPPPPPPPLPSQSAPSAGSAAP 662
Score = 28.1 bits (61), Expect = 2.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 33 PPAQPAPGEPTPPAPPSP 50
PP P P P PP PP P
Sbjct: 626 PPLPPPPPPPPPPPPPPP 643
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 26 EAAVGVPPPAQPAPGEPTPPAPPSP 50
+ A PPP P P P APP P
Sbjct: 757 QVAPPTPPPPPPIPAPLPPQAPPKP 781
Score = 27.3 bits (59), Expect = 3.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 32 PPPAQPAPGEPTPPAPPSP 50
P P P P P PP PP P
Sbjct: 624 PSPPLPPPPPPPPPPPPPP 642
Score = 26.9 bits (58), Expect = 4.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 32 PPPAQPAPGEPTPPAPPSP 50
PP P P P PP PP P
Sbjct: 626 PPLPPPPPPPPPPPPPPPP 644
Score = 26.2 bits (56), Expect = 7.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 32 PPPAQPAPGEPTPPAPPS 49
P Q AP PTPP PP+
Sbjct: 796 PVVTQAAPPTPTPPVPPA 813
Score = 25.8 bits (55), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 35 AQPAPGEPTPPAPPSP 50
+QP+P P PP PP P
Sbjct: 622 SQPSPPLPPPPPPPPP 637
Score = 25.8 bits (55), Expect = 9.9
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 16/61 (26%)
Query: 30 GVPPPAQPAPGEPTP--------PAPPSPDWTSSS--------RENQHPNLLGGAGEPPK 73
GV PP P P PTP PAP +P S + QH + PP
Sbjct: 707 GVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSAPPPPLKIHQVQHITQVAPPTPPPP 766
Query: 74 P 74
P
Sbjct: 767 P 767
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 32 PPPAQPA--PGEPTPPAPPSPDWTSSSRENQHPNL--LGGAGEPPKP 74
PPP +PA PG P P APP+P + R + L L AG PP P
Sbjct: 712 PPPRRPAAPPGPPGPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPP 758
Score = 26.6 bits (57), Expect = 5.8
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 2 ADSGDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAP-GEPTPPAPPS 49
A S GS GP + +E G PP AP P PPAPPS
Sbjct: 907 AASPQPGSRGP----RDGLGPEPQEPPPGPPPSPAAAPEAVPPPPAPPS 951
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 13/47 (27%)
Query: 28 AVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKP 74
+ G+PPP P PGE P PP P L GG G PP P
Sbjct: 688 SAGIPPPPPPLPGEAGMPPPPPP-------------LPGGPGIPPPP 721
Score = 36.6 bits (83), Expect = 0.006
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 29 VGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYGD 80
VG+P P+ G PP PP P S+ P L G AG PP P L G+
Sbjct: 652 VGIPSPSSLPGGTAIPPPPPLPG--SARIPPPPPPLPGSAGIPPPPPPLPGE 701
Score = 35.8 bits (81), Expect = 0.010
Identities = 20/47 (42%), Positives = 21/47 (44%)
Query: 33 PPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYG 79
PP P PG P PP P S+ P L G AG PP P L G
Sbjct: 667 PPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPG 713
Score = 34.3 bits (77), Expect = 0.028
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 31 VPPPAQPAPGE------PTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYGD 80
+PPP PAPG+ P PP PP P + P+L GG P P L GD
Sbjct: 587 IPPP--PAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISP-PPPLSGD 639
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 32 PPPAQPAPGEPT-PPAPPSPDWTSSSRENQHPNLLGGAGEPPKP 74
PPP P G+ T PP PP P+ + P GG PP P
Sbjct: 632 PPP--PLSGDATIPPPPPLPEGVGIPSPSSLP---GGTAIPPPP 670
Score = 26.9 bits (58), Expect = 4.5
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 20/48 (41%)
Query: 30 GVPPPAQP---APGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKP 74
G+PPP P PG PP PP P GG G PP P
Sbjct: 703 GMPPPPPPLPGGPG--IPPPPPFP---------------GGPGIPPPP 733
Score = 26.2 bits (56), Expect = 7.6
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 18/50 (36%)
Query: 30 GVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYG 79
G+PPP P PG P P PP G G PP P +G
Sbjct: 716 GIPPPP-PFPGGPGIPPPPP-----------------GMGMPPPPPFGFG 747
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 13/47 (27%)
Query: 28 AVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKP 74
+ G+PPP P PGE P PP P L GG G PP P
Sbjct: 697 SAGIPPPPPPLPGEAGMPPPPPP-------------LPGGPGIPPPP 730
Score = 36.6 bits (83), Expect = 0.006
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 29 VGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYGD 80
VG+P P+ G PP PP P S+ P L G AG PP P L G+
Sbjct: 661 VGIPSPSSLPGGTAIPPPPPLPG--SARIPPPPPPLPGSAGIPPPPPPLPGE 710
Score = 35.8 bits (81), Expect = 0.010
Identities = 20/47 (42%), Positives = 21/47 (44%)
Query: 33 PPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYG 79
PP P PG P PP P S+ P L G AG PP P L G
Sbjct: 676 PPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPG 722
Score = 34.3 bits (77), Expect = 0.028
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 31 VPPPAQPAPGE------PTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYGD 80
+PPP PAPG+ P PP PP P + P+L GG P P L GD
Sbjct: 596 IPPP--PAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISP-PPPLSGD 648
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 32 PPPAQPAPGEPT-PPAPPSPDWTSSSRENQHPNLLGGAGEPPKP 74
PPP P G+ T PP PP P+ + P GG PP P
Sbjct: 641 PPP--PLSGDATIPPPPPLPEGVGIPSPSSLP---GGTAIPPPP 679
Score = 26.9 bits (58), Expect = 4.5
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 20/48 (41%)
Query: 30 GVPPPAQP---APGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKP 74
G+PPP P PG PP PP P GG G PP P
Sbjct: 712 GMPPPPPPLPGGPG--IPPPPPFP---------------GGPGIPPPP 742
Score = 26.2 bits (56), Expect = 7.6
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 18/50 (36%)
Query: 30 GVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYG 79
G+PPP P PG P P PP G G PP P +G
Sbjct: 725 GIPPPP-PFPGGPGIPPPPP-----------------GMGMPPPPPFGFG 756
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 5 GDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNL 64
G +G W ++ R+K+ G P P P P PPSP T++ + Q P+L
Sbjct: 166 GGRPEAGCWLENRRQRRRKAGAERAGAGPTLTP-PLPAGSPDPPSPAATAAPQPEQRPHL 224
Query: 65 LGGAGE---PPKPDKLYGDK-SGSSRRNLKISRSG 95
G +P++ G S SSRR L S SG
Sbjct: 225 SRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSG 259
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 5 GDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNL 64
G +G W ++ R+K+ G P P P P PPSP T++ + Q P+L
Sbjct: 166 GGRPEAGCWLENRRQRRRKAGAERAGAGPTLTP-PLPAGSPDPPSPAATAAPQPEQRPHL 224
Query: 65 LGGAGE---PPKPDKLYGDK-SGSSRRNLKISRSG 95
G +P++ G S SSRR L S SG
Sbjct: 225 SRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSG 259
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 5 GDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNL 64
G +G W ++ R+K+ G P P P P PPSP T++ + Q P+L
Sbjct: 166 GGRPEAGCWLENRRQRRRKAGAERAGAGPTLTP-PLPAGSPDPPSPAATAAPQPEQRPHL 224
Query: 65 LGGAGE---PPKPDKLYGDK-SGSSRRNLKISRSG 95
G +P++ G S SSRR L S SG
Sbjct: 225 SRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSG 259
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 4 SGDAGSSGPWW------KSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSR 57
SG G S W + +N+R A PPP QP P +P P PP P S +R
Sbjct: 562 SGGGGYSQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPAR 621
Query: 58 E-------NQHPNLLGGAGEPPKP 74
N++ N+ G + P
Sbjct: 622 NPPGASTYNKNSNIPGSSANTSTP 645
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 4 SGDAGSSGPWW------KSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSR 57
SG G S W + +N+R A PPP QP P +P P PP P S +R
Sbjct: 662 SGGGGYSQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPAR 721
Query: 58 E-------NQHPNLLGGAGEPPKP 74
N++ N+ G + P
Sbjct: 722 NPPGASTYNKNSNIPGSSANTSTP 745
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 37.0 bits (84), Expect = 0.004
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 5 GDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTS-SSRENQHPN 63
GD GS W R+ + AA PP P+PG P PP P TS SSRE +
Sbjct: 980 GDTGSPRKPWPE----RRPPRPAATRTAPPT-PSPGPSASPGPPGPALTSDSSRELTPHS 1034
Query: 64 LLGGAGEPPKPDKLYGDKSGSSRRN 88
L PD +SR N
Sbjct: 1035 ALTSEATSDAPDTSPPTPDPASRTN 1059
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 37.0 bits (84), Expect = 0.004
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 3 DSGDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHP 62
+ G+AG G + +S + S+ P P P+PP PP P T+ S
Sbjct: 64 EPGEAGRDG-----MGDSGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPS------ 112
Query: 63 NLLGGAGEPPKP 74
LGG+G PP P
Sbjct: 113 --LGGSGAPPPP 122
Score = 26.9 bits (58), Expect = 4.5
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 30 GVPPPAQPAP---GEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYGDKSGSSR 86
G P P AP G PP PP P S + +G G PP + S +
Sbjct: 102 GPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQ 161
Query: 87 RNLKISRSG 95
N +S G
Sbjct: 162 INSTVSLPG 170
Score = 26.6 bits (57), Expect = 5.8
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 15/60 (25%)
Query: 32 PPPAQPAP------------GEP--TPPAPPS-PDWTSSSRENQHPNLLGGAGEPPKPDK 76
PPP P P G P PPAPP SS + N +L GG PP+ K
Sbjct: 121 PPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVK 180
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 37.0 bits (84), Expect = 0.004
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 25 KEAAVGVPPPAQPAP--GEPTPPAPPSPDWTSSSRE----NQHPNL-----LGGAGEPPK 73
+ A G PPA P P G P PP + +WTS SR QH L GG G
Sbjct: 703 RSCAAGARPPASPEPCHGTPCPPYWEAGEWTSCSRSCGPGTQHRQLQCRQEFGGGGSSVP 762
Query: 74 PDK 76
P++
Sbjct: 763 PER 765
Score = 29.6 bits (65), Expect = 0.69
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 27/80 (33%)
Query: 5 GDAGSSGPW--WKSLTNSRKKSKEAAVGVP--------PPAQPAPGEPTPPAPPSPDWTS 54
G G GPW W S S+ VGV P Q P P PP PP
Sbjct: 42 GPEGVWGPWVQWASC------SQPCGVGVQRRSRTCQLPTVQLHPSLPLPPRPP------ 89
Query: 55 SSRENQHPNLLGGAGEPPKP 74
+HP L G+ P+P
Sbjct: 90 -----RHPEALLPRGQGPRP 104
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 37.0 bits (84), Expect = 0.004
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 18 TNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKL 77
T ++ S + + PP A P PG PP PP+P L GGA PP P L
Sbjct: 537 TQAQVLSSSSGIPGPPAAPPLPGVGPPPPPPAPP------------LPGGAPLPPPPPPL 584
Query: 78 YG 79
G
Sbjct: 585 PG 586
Score = 33.5 bits (75), Expect = 0.048
Identities = 21/50 (42%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 32 PPPAQPAPGEPT--PPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYG 79
PPPA P PG PP PP P P L GG PP P L G
Sbjct: 565 PPPAPPLPGGAPLPPPPPPLPGMMGIPPPPPPPLLFGG---PPPPPPLGG 611
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 37.0 bits (84), Expect = 0.004
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 18 TNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKL 77
T ++ S + + PP A P PG PP PP+P L GGA PP P L
Sbjct: 537 TQAQVLSSSSGIPGPPAAPPLPGVGPPPPPPAPP------------LPGGAPLPPPPPPL 584
Query: 78 YG 79
G
Sbjct: 585 PG 586
Score = 33.5 bits (75), Expect = 0.048
Identities = 21/50 (42%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 32 PPPAQPAPGEPT--PPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYG 79
PPPA P PG PP PP P P L GG PP P L G
Sbjct: 565 PPPAPPLPGGAPLPPPPPPLPGMMGIPPPPPPPLLFGG---PPPPPPLGG 611
>gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo
sapiens]
Length = 877
Score = 37.0 bits (84), Expect = 0.004
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 25 KEAAVGVPPPAQPAP--GEPTPPAPPSPDWTSSSRE----NQHPNL-----LGGAGEPPK 73
+ A G PPA P P G P PP + +WTS SR QH L GG G
Sbjct: 703 RSCAAGARPPASPEPCHGTPCPPYWEAGEWTSCSRSCGPGTQHRQLQCRQEFGGGGSSVP 762
Query: 74 PDK 76
P++
Sbjct: 763 PER 765
Score = 29.6 bits (65), Expect = 0.69
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 27/80 (33%)
Query: 5 GDAGSSGPW--WKSLTNSRKKSKEAAVGVP--------PPAQPAPGEPTPPAPPSPDWTS 54
G G GPW W S S+ VGV P Q P P PP PP
Sbjct: 42 GPEGVWGPWVQWASC------SQPCGVGVQRRSRTCQLPTVQLHPSLPLPPRPP------ 89
Query: 55 SSRENQHPNLLGGAGEPPKP 74
+HP L G+ P+P
Sbjct: 90 -----RHPEALLPRGQGPRP 104
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 36.6 bits (83), Expect = 0.006
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 32 PPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYGDKSGSSRRNLKI 91
PPP P P P PP PP PD P+ LG P K +K G R+ K
Sbjct: 74 PPPPPPPPPLPPPPPPPPPD---KDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKR 130
Query: 92 SRSGRFKEKR 101
F +R
Sbjct: 131 DSEEEFGSER 140
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 36.2 bits (82), Expect = 0.007
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 4 SGDAGSSGPWWKSLTNSRKKSKEAAVGVP----PPAQPA-PGEPTPPAPPSPDWTSSSRE 58
+G G GP NS +K + G P PP P PG+ P PP P S
Sbjct: 1134 AGPRGERGPQG----NSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEG 1189
Query: 59 NQHPNLLGGAGEPPKPDKLYG 79
+ P+ L G+ PP P + G
Sbjct: 1190 IRGPSGLPGSPGPPGPPGIQG 1210
Score = 27.3 bits (59), Expect = 3.4
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 32 PPPAQPAPGEPTPPAPP-------SPDWTSSSRENQHPNLLGGAGEPPKP 74
PP + +PG P P PP SP E L G GEP P
Sbjct: 1037 PPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPP 1086
Score = 26.2 bits (56), Expect = 7.6
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 5 GDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNL 64
G G +G L R + E + P PG P PP P D ++ + P
Sbjct: 1300 GQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTD--GAAGKEGPPGK 1357
Query: 65 LGGAGEP-PKPD 75
G G P PK D
Sbjct: 1358 QGFYGPPGPKGD 1369
>gi|197333868 T-box 2 [Homo sapiens]
Length = 712
Score = 35.8 bits (81), Expect = 0.010
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 32 PPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPPKPDKLYGDKSGSSRRNLKI 91
PPPA+ P +P A PSP +R + A P+P++L +++G+
Sbjct: 327 PPPAREPP--TSPGAAPSPLRLHRARAEEKSC---AADSDPEPERLSEERAGAPLGRSPA 381
Query: 92 SRSG---RFKEKRKVRATLLPEAGRSPEEAGFPG 122
S R E + R PE G+ P E+G G
Sbjct: 382 PDSASPTRLTEPERARERRSPERGKEPAESGGDG 415
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 35.8 bits (81), Expect = 0.010
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 25 KEAAVGVPPPAQPAPGEPTPPAPP-----SPDWTSSSRENQHPNLLGGAGEPP 72
+ AA + PP P PG P PP+PP SP +S + ++ P+ EPP
Sbjct: 827 RRAAGRLGPPGSPLPGSPRPPSPPLGLCHSPRRSSLNLPSRLPHTWRRLSEPP 879
>gi|38261962 activating transcription factor 7 interacting protein
[Homo sapiens]
Length = 1270
Score = 35.8 bits (81), Expect = 0.010
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 2 ADSGDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTS---SSRE 58
A SGDA S T+ + + + G P + P PGEP P P S D + +S E
Sbjct: 174 ATSGDAPSGDVSPGDATSGDATADDLSSGDPTSSDPIPGEPVPVEPISGDCAADDIASSE 233
Query: 59 NQHPNLLGGA---GEPPKPDKLYGDKSGS 84
+L GA +P D GD S S
Sbjct: 234 ITSVDLASGAPASTDPASDDLASGDLSSS 262
Score = 29.3 bits (64), Expect = 0.90
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 4 SGDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPN 63
SGD+ S P ++S S +A G P +PG+ T + D +S + P
Sbjct: 151 SGDSTSGDPTSSEPSSSDAASGDATSGDAPSGDVSPGDATSGDATADDLSSGDPTSSDPI 210
Query: 64 LLGGAGEPPKPDKLYGD 80
GEP + + GD
Sbjct: 211 ----PGEPVPVEPISGD 223
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 35.8 bits (81), Expect = 0.010
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 20 SRKKSKEAAVGVPPPAQPAPGEPTPPAPP 48
+R AA+G PPP A G PTPP PP
Sbjct: 987 ARTPPAAAALGAPPPLVTAAGPPTPPGPP 1015
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
sapiens]
Length = 1792
Score = 35.8 bits (81), Expect = 0.010
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 30 GVPPPAQ---PAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGEPP-KPDKLYGDKSGSS 85
G PPPA P PG P PA S W SS + H N + PP ++ Y ++
Sbjct: 590 GQPPPAGYSVPPPGFPPAPANLSTPWVSSGVQTAHSNTIPTTQAPPLSREEFYREQRRLK 649
Query: 86 RRNLKISRSGRF 97
K S+ F
Sbjct: 650 EEEKKKSKLDEF 661
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.128 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,786,211
Number of Sequences: 37866
Number of extensions: 507479
Number of successful extensions: 10071
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 642
Number of HSP's that attempted gapping in prelim test: 4300
Number of HSP's gapped (non-prelim): 4681
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.