Guide to the Human Genome
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Name: RNF175 Sequence: fasta or formatted (328aa) NCBI GI: 27734859
Description:

ring finger protein 175

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         17           2
 C cysteine            3.0         10           1
 D aspartate           3.0         10           1
 E glutamate           4.3         14           2
 F phenylalanine       5.5         18           2
 G glycine             6.4         21           1
 H histidine           2.4          8           1
 I isoleucine          7.3         24           2
 K lysine              4.6         15           2
 L leucine            11.0         36           2
 M methionine          4.3         14           1
 N asparagine          2.4          8           1
 P proline             3.0         10           2
 Q glutamine           4.6         15           2
 R arginine            5.8         19           1
 S serine              6.1         20           1
 T threonine           4.3         14           1
 V valine              7.6         25           2
 W tryptophan          3.4         11           2
 Y tyrosine            5.8         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 175 
RNF121                0.722   ring finger protein 121 
SYVN1                 0.033   synoviolin 1 isoform b 
SYVN1                 0.033   synoviolin 1 isoform a 
RNF151                0.027   ring finger protein 151 
RNF126                0.026   ring finger protein 126 
RNF111                0.024   ring finger protein 111 
RNF13                 0.023   ring finger protein 13 
RNF13                 0.023   ring finger protein 13 
RNF165                0.023   ring finger protein 165 
RNF115                0.021   Rabring 7 
RNF139                0.021   ring finger protein 139 
RNF181                0.021   ring finger protein 181 
ZNRF4                 0.021   zinc and ring finger 4 
RNF128                0.020   ring finger protein 128 isoform 1 
RNF128                0.020   ring finger protein 128 isoform 2 
RNF32                 0.020   ring finger protein 32 
RNF167                0.018   ring finger protein 167 
ZNRF3                 0.018   zinc and ring finger 3 
RNF214                0.018   ring finger protein 214 
RNF214                0.018   ring finger protein 214 
RLIM                  0.017   ring finger protein, LIM domain interacting 
RLIM                  0.017   ring finger protein, LIM domain interacting 
BFAR                  0.017   bifunctional apoptosis regulator 
LOC100290625          0.015   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.015   PREDICTED: hypothetical protein XP_002342853 
RNF149                0.015   ring finger protein 149 
AMFR                  0.015   autocrine motility factor receptor 
RNF103                0.015   ring finger protein 103 
RNF145                0.015   ring finger protein 145 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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