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Search of human proteins with 27734744
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27734744 hypothetical protein LOC284085 [Homo sapiens]
(259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27734744 hypothetical protein LOC284085 [Homo sapiens] 530 e-151
gi|40354195 keratin 18 [Homo sapiens] 298 2e-81
gi|4557888 keratin 18 [Homo sapiens] 298 2e-81
gi|195972866 keratin 10 [Homo sapiens] 159 3e-39
gi|24234699 keratin 19 [Homo sapiens] 155 3e-38
gi|15431310 keratin 14 [Homo sapiens] 155 3e-38
gi|24430192 keratin 16 [Homo sapiens] 153 1e-37
gi|192807292 keratin 24 [Homo sapiens] 152 4e-37
gi|24430190 keratin 15 [Homo sapiens] 149 2e-36
gi|4557701 keratin 17 [Homo sapiens] 148 4e-36
gi|94538345 keratin 35 [Homo sapiens] 147 9e-36
gi|4504927 keratin 36 [Homo sapiens] 146 2e-35
gi|131412228 keratin 13 isoform b [Homo sapiens] 144 1e-34
gi|131412225 keratin 13 isoform a [Homo sapiens] 144 1e-34
gi|114431246 keratin 25D [Homo sapiens] 141 6e-34
gi|153945736 keratin 27 [Homo sapiens] 141 6e-34
gi|4557699 keratin 12 [Homo sapiens] 140 1e-33
gi|116488398 keratin 32 [Homo sapiens] 139 2e-33
gi|27894337 keratin 20 [Homo sapiens] 139 3e-33
gi|14917117 keratin 33A [Homo sapiens] 136 2e-32
gi|31559829 keratin 25 [Homo sapiens] 133 2e-31
gi|14917115 keratin 31 [Homo sapiens] 133 2e-31
gi|125490370 type I hair keratin KA36 [Homo sapiens] 130 9e-31
gi|31559815 keratin 26 [Homo sapiens] 129 3e-30
gi|10337581 type I hair keratin 3B [Homo sapiens] 128 4e-30
gi|14917119 keratin 34 [Homo sapiens] 123 1e-28
gi|148277620 type I hair keratin KA35 [Homo sapiens] 121 7e-28
gi|55956899 keratin 9 [Homo sapiens] 118 4e-27
gi|15431318 keratin 38 [Homo sapiens] 117 1e-26
gi|55770882 keratin 37 [Homo sapiens] 117 1e-26
>gi|27734744 hypothetical protein LOC284085 [Homo sapiens]
Length = 259
Score = 530 bits (1364), Expect = e-151
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MDHCLISGLSQLDLPSALTKNWPSKPESCPLALLPGQHELHHLLHPLHQLPVPGHCPGTQ 60
MDHCLISGLSQLDLPSALTKNWPSKPESCPLALLPGQHELHHLLHPLHQLPVPGHCPGTQ
Sbjct: 1 MDHCLISGLSQLDLPSALTKNWPSKPESCPLALLPGQHELHHLLHPLHQLPVPGHCPGTQ 60
Query: 61 LCAQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKET 120
LCAQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKET
Sbjct: 61 LCAQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKET 120
Query: 121 MQSLNDHLASYLDRVRSLDTKNWKLESQEHLEKKGPQVRDWSHDFKTIENLRAQIFANTV 180
MQSLNDHLASYLDRVRSLDTKNWKLESQEHLEKKGPQVRDWSHDFKTIENLRAQIFANTV
Sbjct: 121 MQSLNDHLASYLDRVRSLDTKNWKLESQEHLEKKGPQVRDWSHDFKTIENLRAQIFANTV 180
Query: 181 DSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKA 240
DSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKA
Sbjct: 181 DSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKA 240
Query: 241 LKEKLLFMKKNHEEEVKGL 259
LKEKLLFMKKNHEEEVKGL
Sbjct: 241 LKEKLLFMKKNHEEEVKGL 259
>gi|40354195 keratin 18 [Homo sapiens]
Length = 430
Score = 298 bits (764), Expect = 2e-81
Identities = 160/199 (80%), Positives = 174/199 (87%), Gaps = 2/199 (1%)
Query: 63 AQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKETMQ 122
A+ VSS ASVYAG GSGSRIS+S TSF+G MGS GL +AGGLAGMG IQNEKETMQ
Sbjct: 26 ARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQ 85
Query: 123 SLNDHLASYLDRVRSLDTKNWKLESQ--EHLEKKGPQVRDWSHDFKTIENLRAQIFANTV 180
SLND LASYLDRVRSL+T+N +LES+ EHLEKKGPQVRDWSH FK IE+LRAQIFANTV
Sbjct: 86 SLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQIFANTV 145
Query: 181 DSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKA 240
D+A IVLQIDNA LA DDFRVKYETELAM QSVE+DIHGL KVIDDTN+T LQLE EI+A
Sbjct: 146 DNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEA 205
Query: 241 LKEKLLFMKKNHEEEVKGL 259
LKE+LLFMKKNHEEEVKGL
Sbjct: 206 LKEELLFMKKNHEEEVKGL 224
>gi|4557888 keratin 18 [Homo sapiens]
Length = 430
Score = 298 bits (764), Expect = 2e-81
Identities = 160/199 (80%), Positives = 174/199 (87%), Gaps = 2/199 (1%)
Query: 63 AQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKETMQ 122
A+ VSS ASVYAG GSGSRIS+S TSF+G MGS GL +AGGLAGMG IQNEKETMQ
Sbjct: 26 ARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQ 85
Query: 123 SLNDHLASYLDRVRSLDTKNWKLESQ--EHLEKKGPQVRDWSHDFKTIENLRAQIFANTV 180
SLND LASYLDRVRSL+T+N +LES+ EHLEKKGPQVRDWSH FK IE+LRAQIFANTV
Sbjct: 86 SLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQIFANTV 145
Query: 181 DSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKA 240
D+A IVLQIDNA LA DDFRVKYETELAM QSVE+DIHGL KVIDDTN+T LQLE EI+A
Sbjct: 146 DNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEA 205
Query: 241 LKEKLLFMKKNHEEEVKGL 259
LKE+LLFMKKNHEEEVKGL
Sbjct: 206 LKEELLFMKKNHEEEVKGL 224
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 159 bits (401), Expect = 3e-39
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 10/203 (4%)
Query: 67 SSVASVYAGIRGSGS--RISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQ--NEKETMQ 122
SS Y G G GS S + G G G GG G G + NEK TMQ
Sbjct: 92 SSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGGGFGGGFGGDGGLLSGNEKVTMQ 151
Query: 123 SLNDHLASYLDRVRSLDTKNWKLESQ--EHLEKKGP----QVRDWSHDFKTIENLRAQIF 176
+LND LASYLD+VR+L+ N++LE + E EK G + RD+S +KTI++L+ QI
Sbjct: 152 NLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSHQGEPRDYSKYYKTIDDLKNQIL 211
Query: 177 ANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEA 236
T D+A+I+LQIDNA LA DDFR+KYE E+A+ QSVE+DI+GL +V+D+ +T LE
Sbjct: 212 NLTTDNANILLQIDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTLTKADLEM 271
Query: 237 EIKALKEKLLFMKKNHEEEVKGL 259
+I++L E+L ++KKNHEEE+K L
Sbjct: 272 QIESLTEELAYLKKNHEEEMKDL 294
>gi|24234699 keratin 19 [Homo sapiens]
Length = 400
Score = 155 bits (392), Expect = 3e-38
Identities = 91/196 (46%), Positives = 128/196 (65%), Gaps = 12/196 (6%)
Query: 71 SVYAGIRGSGSRISMSCFTSFQGSM----GSRGLPAVMAGGLAGMGVIQNEKETMQSLND 126
S++ G G G +S + F S S G G+ G LAG NEK TMQ+LND
Sbjct: 35 SIHGGSGGRGVSVSSARFVSSSSSGAYGGGYGGVLTASDGLLAG-----NEKLTMQNLND 89
Query: 127 HLASYLDRVRSLDTKNWKLESQ--EHLEKKGP-QVRDWSHDFKTIENLRAQIFANTVDSA 183
LASYLD+VR+L+ N +LE + + +K+GP RD+SH + TI++LR +I T++++
Sbjct: 90 RLASYLDKVRALEAANGELEVKIRDWYQKQGPGPSRDYSHYYTTIQDLRDKILGATIENS 149
Query: 184 HIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKALKE 243
IVLQIDNA LA DDFR K+ETE A+ SVE+DI+GL +V+D+ + LE +I+ LKE
Sbjct: 150 RIVLQIDNARLAADDFRTKFETEQALRMSVEADINGLRRVLDELTLARTDLEMQIEGLKE 209
Query: 244 KLLFMKKNHEEEVKGL 259
+L ++KKNHEEE+ L
Sbjct: 210 ELAYLKKNHEEEISTL 225
>gi|15431310 keratin 14 [Homo sapiens]
Length = 472
Score = 155 bits (392), Expect = 3e-38
Identities = 91/193 (47%), Positives = 128/193 (66%), Gaps = 8/193 (4%)
Query: 75 GIRGSGSRISMSCFTSFQGSMGS---RGLPAVMAGGLAGMG--VIQNEKETMQSLNDHLA 129
G G S S S + F G G GL GG AG ++ +EK TMQ+LND LA
Sbjct: 68 GYGGGFSSSSSSFGSGFGGGYGGGLGAGLGGGFGGGFAGGDGLLVGSEKVTMQNLNDRLA 127
Query: 130 SYLDRVRSLDTKNWKLESQ--EHLEKKGP-QVRDWSHDFKTIENLRAQIFANTVDSAHIV 186
SYLD+VR+L+ N LE + + +++ P +++D+S FKTIE+LR +I TVD+A+++
Sbjct: 128 SYLDKVRALEEANADLEVKIRDWYQRQRPAEIKDYSPYFKTIEDLRNKILTATVDNANVL 187
Query: 187 LQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKALKEKLL 246
LQIDNA LA DDFR KYETEL + SVE+DI+GL +V+D+ + LE +I++LKE+L
Sbjct: 188 LQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTLARADLEMQIESLKEELA 247
Query: 247 FMKKNHEEEVKGL 259
++KKNHEEE+ L
Sbjct: 248 YLKKNHEEEMNAL 260
>gi|24430192 keratin 16 [Homo sapiens]
Length = 473
Score = 153 bits (387), Expect = 1e-37
Identities = 94/215 (43%), Positives = 136/215 (63%), Gaps = 14/215 (6%)
Query: 58 GTQLCAQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGL-AGMG---- 112
G + ++ S A G G G S S + F G G GL A GGL AG G
Sbjct: 49 GLSVSSRFSSGGACGLGGGYGGGFSSSSSFGSGFGGGYGG-GLGAGFGGGLGAGFGGGFA 107
Query: 113 -----VIQNEKETMQSLNDHLASYLDRVRSLDTKNWKLESQ--EHLEKKGP-QVRDWSHD 164
++ +EK TMQ+LND LASYLD+VR+L+ N LE + + +++ P +++D+S
Sbjct: 108 GGDGLLVGSEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPSEIKDYSPY 167
Query: 165 FKTIENLRAQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVI 224
FKTIE+LR +I A T+++A +LQIDNA LA DDFR KYE ELA+ Q+VE+D++GL +V+
Sbjct: 168 FKTIEDLRNKIIAATIENAQPILQIDNARLAADDFRTKYEHELALRQTVEADVNGLRRVL 227
Query: 225 DDTNVTWLQLEAEIKALKEKLLFMKKNHEEEVKGL 259
D+ + LE +I+ LKE+L +++KNHEEE+ L
Sbjct: 228 DELTLARTDLEMQIEGLKEELAYLRKNHEEEMLAL 262
>gi|192807292 keratin 24 [Homo sapiens]
Length = 525
Score = 152 bits (383), Expect = 4e-37
Identities = 98/208 (47%), Positives = 129/208 (62%), Gaps = 23/208 (11%)
Query: 67 SSVASVYAGIRGSG----SRISMSC---FTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKE 119
SS V RGSG SR S F S+ G MG V GGL G EK+
Sbjct: 91 SSFGGVSGFGRGSGFCGSSRFSSGATGGFYSYGGGMGG----GVGDGGLFSGG----EKQ 142
Query: 120 TMQSLNDHLASYLDRVRSLDTKNWKLESQ--EHLEKKGP------QVRDWSHDFKTIENL 171
TMQ+LND LA+YLD+VR+L+ N LE++ E +K GP RD+S + IE+L
Sbjct: 143 TMQNLNDRLANYLDKVRALEEANTDLENKIKEWYDKYGPGSGDGGSGRDYSKYYSIIEDL 202
Query: 172 RAQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTW 231
R QI A TV++A I+L IDNA LA DDFR+KYE EL + QSVE+DI+GL KV+DD +T
Sbjct: 203 RNQIIAATVENAGIILHIDNARLAADDFRLKYENELCLRQSVEADINGLRKVLDDLTMTR 262
Query: 232 LQLEAEIKALKEKLLFMKKNHEEEVKGL 259
LE +I++ E+L +++KNHEEE+K +
Sbjct: 263 SDLEMQIESFTEELAYLRKNHEEEMKNM 290
>gi|24430190 keratin 15 [Homo sapiens]
Length = 456
Score = 149 bits (377), Expect = 2e-36
Identities = 91/200 (45%), Positives = 126/200 (63%), Gaps = 13/200 (6%)
Query: 69 VASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGM------GVIQ-NEKETM 121
V+S G G G R+ F GS+ G + GG G G++ NEK TM
Sbjct: 52 VSSGSGGGYGGGMRVCG--FGGGAGSVFGGGFGGGVGGGFGGGFGGGDGGLLSGNEKITM 109
Query: 122 QSLNDHLASYLDRVRSLDTKNWKLESQEH--LEKKGPQVR--DWSHDFKTIENLRAQIFA 177
Q+LND LASYLD+VR+L+ N LE + H +K+ P D+S FKTIE LR +I A
Sbjct: 110 QNLNDRLASYLDKVRALEEANADLEVKIHDWYQKQTPTSPECDYSQYFKTIEELRDKIMA 169
Query: 178 NTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAE 237
T+D++ ++L+IDNA LA DDFR+KYE ELA+ Q VE+DI+GL +V+D+ + LE +
Sbjct: 170 TTIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRVLDELTLARTDLEMQ 229
Query: 238 IKALKEKLLFMKKNHEEEVK 257
I+ L E+L ++KKNHEEE+K
Sbjct: 230 IEGLNEELAYLKKNHEEEMK 249
>gi|4557701 keratin 17 [Homo sapiens]
Length = 432
Score = 148 bits (374), Expect = 4e-36
Identities = 87/185 (47%), Positives = 125/185 (67%), Gaps = 5/185 (2%)
Query: 78 GSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKETMQSLNDHLASYLDRVRS 137
G GS + S ++S S GS G GG+ G+ + EK TMQ+LND LASYLD+VR+
Sbjct: 47 GLGSTLGGSSYSSCY-SFGSGGGYGSSFGGVDGL-LAGGEKATMQNLNDRLASYLDKVRA 104
Query: 138 LDTKNWKLESQ--EHLEKKGP-QVRDWSHDFKTIENLRAQIFANTVDSAHIVLQIDNACL 194
L+ N +LE + + +++ P RD+S ++TIE L+ +I TVD+A+I+LQIDNA L
Sbjct: 105 LEEANTELEVKIRDWYQRQAPGPARDYSQYYRTIEELQNKILTATVDNANILLQIDNARL 164
Query: 195 AGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKALKEKLLFMKKNHEE 254
A DDFR K+ETE A+ SVE+DI+GL +V+D+ + LE +I+ LKE+L ++KKNHEE
Sbjct: 165 AADDFRTKFETEQALRLSVEADINGLRRVLDELTLARADLEMQIENLKEELAYLKKNHEE 224
Query: 255 EVKGL 259
E+ L
Sbjct: 225 EMNAL 229
>gi|94538345 keratin 35 [Homo sapiens]
Length = 455
Score = 147 bits (371), Expect = 9e-36
Identities = 84/186 (45%), Positives = 120/186 (64%), Gaps = 4/186 (2%)
Query: 78 GSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQ-NEKETMQSLNDHLASYLDRVR 136
G S + SC + G GG G G++ NEKETMQSLND LA YL++VR
Sbjct: 57 GRSSYRATSCLPALCLPAGGFATSYSGGGGWFGEGILTGNEKETMQSLNDRLAGYLEKVR 116
Query: 137 SLDTKNWKLESQ--EHLEKKGPQV-RDWSHDFKTIENLRAQIFANTVDSAHIVLQIDNAC 193
L+ +N LES+ E E++ P + D+ F+TIE L+ + + ++A +V++IDNA
Sbjct: 117 QLEQENASLESRIREWCEQQVPYMCPDYQSYFRTIEELQKKTLCSKAENARLVVEIDNAK 176
Query: 194 LAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKALKEKLLFMKKNHE 253
LA DDFR KYETE+++ Q VESDI+GL +++DD + LEA++++LKE+LL +KKNHE
Sbjct: 177 LAADDFRTKYETEVSLRQLVESDINGLRRILDDLTLCKSDLEAQVESLKEELLCLKKNHE 236
Query: 254 EEVKGL 259
EEV L
Sbjct: 237 EEVNSL 242
>gi|4504927 keratin 36 [Homo sapiens]
Length = 467
Score = 146 bits (368), Expect = 2e-35
Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 16/213 (7%)
Query: 54 GHC--PGTQLCAQLVSSVASVYAGIRGS--GSRISMSCFTSFQGSMGSRGLPAVMAGGLA 109
G C P A +SS S +G+ GS +S C TS G +GS G G
Sbjct: 35 GSCRVPSLAGAAGYISSARSGLSGLGSCLPGSYLSSECHTS--GFVGSGGW--FCEGSFN 90
Query: 110 GMGVIQNEKETMQSLNDHLASYLDRVRSLDTKNWKLES--QEHLEKKGPQV-RDWSHDFK 166
G +EKETMQ LND LA+YL++VR L+ +N +LES QE E + P + D+ FK
Sbjct: 91 G-----SEKETMQFLNDRLANYLEKVRQLERENAELESRIQEWYEFQIPYICPDYQSYFK 145
Query: 167 TIENLRAQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDD 226
TIE+ + +I ++A +VLQIDNA LA DDFR KYETEL++ Q VE+DI+GL +++D+
Sbjct: 146 TIEDFQQKILLTKSENARLVLQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDE 205
Query: 227 TNVTWLQLEAEIKALKEKLLFMKKNHEEEVKGL 259
+ LEA++++LKE+L+ +KKNHEEEV L
Sbjct: 206 LTLCKADLEAQVESLKEELMCLKKNHEEEVSVL 238
>gi|131412228 keratin 13 isoform b [Homo sapiens]
Length = 420
Score = 144 bits (362), Expect = 1e-34
Identities = 83/178 (46%), Positives = 118/178 (66%), Gaps = 13/178 (7%)
Query: 91 FQGSMGSRGLPAVMAGGLAGMGVIQ------NEKETMQSLNDHLASYLDRVRSLDTKNWK 144
+ G +G G AGG G NEK TMQ+LND LASYL++VR+L+ N
Sbjct: 73 YGGGLGG-GFGGGFAGGFVDFGACDGGLLTGNEKITMQNLNDRLASYLEKVRALEEANAD 131
Query: 145 LESQE---HLEKK--GPQVRDWSHDFKTIENLRAQIFANTVDSAHIVLQIDNACLAGDDF 199
LE + HL++ P+ RD+S +KTIE LR +I T+++ ++L+IDNA LA DDF
Sbjct: 132 LEVKIRDWHLKQSPASPE-RDYSPYYKTIEELRDKILTATIENNRVILEIDNARLAADDF 190
Query: 200 RVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKALKEKLLFMKKNHEEEVK 257
R+KYE ELA+ QSVE+DI+GL +V+D+ ++ LE +I++L E+L +MKKNHEEE+K
Sbjct: 191 RLKYENELALRQSVEADINGLRRVLDELTLSKTDLEMQIESLNEELAYMKKNHEEEMK 248
>gi|131412225 keratin 13 isoform a [Homo sapiens]
Length = 458
Score = 144 bits (362), Expect = 1e-34
Identities = 83/178 (46%), Positives = 118/178 (66%), Gaps = 13/178 (7%)
Query: 91 FQGSMGSRGLPAVMAGGLAGMGVIQ------NEKETMQSLNDHLASYLDRVRSLDTKNWK 144
+ G +G G AGG G NEK TMQ+LND LASYL++VR+L+ N
Sbjct: 73 YGGGLGG-GFGGGFAGGFVDFGACDGGLLTGNEKITMQNLNDRLASYLEKVRALEEANAD 131
Query: 145 LESQE---HLEKK--GPQVRDWSHDFKTIENLRAQIFANTVDSAHIVLQIDNACLAGDDF 199
LE + HL++ P+ RD+S +KTIE LR +I T+++ ++L+IDNA LA DDF
Sbjct: 132 LEVKIRDWHLKQSPASPE-RDYSPYYKTIEELRDKILTATIENNRVILEIDNARLAADDF 190
Query: 200 RVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKALKEKLLFMKKNHEEEVK 257
R+KYE ELA+ QSVE+DI+GL +V+D+ ++ LE +I++L E+L +MKKNHEEE+K
Sbjct: 191 RLKYENELALRQSVEADINGLRRVLDELTLSKTDLEMQIESLNEELAYMKKNHEEEMK 248
>gi|114431246 keratin 25D [Homo sapiens]
Length = 464
Score = 141 bits (355), Expect = 6e-34
Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 22/213 (10%)
Query: 54 GHCPGTQLCAQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGV 113
G G++ L + SV G G+ + +C G GS G G L+G
Sbjct: 38 GSVAGSEFSCALGGGLGSVPGGSHAGGALGNAACI----GFAGSEG------GLLSG--- 84
Query: 114 IQNEKETMQSLNDHLASYLDRVRSLDTKNWKLESQEH--LEKKGP-QVRDWSHDFK---- 166
NEK TMQ+LND LASYLD VR+L+ N +LE + EK GP R HD+
Sbjct: 85 --NEKVTMQNLNDRLASYLDNVRALEEANAELERKIKGWYEKYGPGSCRGLDHDYSRYHL 142
Query: 167 TIENLRAQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDD 226
TIE+L+ +I ++T +A+++LQIDNA LA DDFR+KYE EL + Q+VE+DI+GL +V+D+
Sbjct: 143 TIEDLKNKIISSTTTNANVILQIDNARLAADDFRLKYENELTLHQNVEADINGLRRVLDE 202
Query: 227 TNVTWLQLEAEIKALKEKLLFMKKNHEEEVKGL 259
+ E + ++L E++ ++KKNHEEE+K L
Sbjct: 203 LTLCRTDQELQYESLSEEMTYLKKNHEEEMKAL 235
>gi|153945736 keratin 27 [Homo sapiens]
Length = 459
Score = 141 bits (355), Expect = 6e-34
Identities = 93/225 (41%), Positives = 126/225 (56%), Gaps = 23/225 (10%)
Query: 54 GHCPGT---QLCAQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAG 110
G C GT +L + A G+ G GS SC +F GS + G + GG A
Sbjct: 13 GSCGGTGSVRLSSGGAGFGAGNTCGVPGIGS--GFSC--AFGGSSSAGGYGGGLGGGSAS 68
Query: 111 MGVIQ---------NEKETMQSLNDHLASYLDRVRSLDTKNWKLESQEH--LEKKGPQV- 158
NEK TMQ+LND LASYL+ VR+L+ N LE + EK GP
Sbjct: 69 CAAFTGNEHGLLSGNEKVTMQNLNDRLASYLENVRALEEANADLEQKIKGWYEKFGPGSC 128
Query: 159 ----RDWSHDFKTIENLRAQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVE 214
D+S F I+ L+ QI + T +AH+VLQ DNA L DDFR+K+E ELA+ QSVE
Sbjct: 129 RGLDHDYSRYFPIIDELKNQIISATTSNAHVVLQNDNARLTADDFRLKFENELALHQSVE 188
Query: 215 SDIHGLHKVIDDTNVTWLQLEAEIKALKEKLLFMKKNHEEEVKGL 259
+DI+GL +V+D+ + LE +++ L E+L ++KKNHEEE+K L
Sbjct: 189 ADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHEEEMKAL 233
>gi|4557699 keratin 12 [Homo sapiens]
Length = 494
Score = 140 bits (352), Expect = 1e-33
Identities = 83/202 (41%), Positives = 129/202 (63%), Gaps = 11/202 (5%)
Query: 63 AQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKETMQ 122
+ + + + Y G GS + F GS G L +++G G+ + +EKETMQ
Sbjct: 75 SSMAGGLGAGYGRALGGGSFGGLGM--GFGGSPGGGSL-GILSGNDGGL-LSGSEKETMQ 130
Query: 123 SLNDHLASYLDRVRSLDTKNWKLESQ--EHLEKKGPQVRD-----WSHDFKTIENLRAQI 175
+LND LASYLD+VR+L+ N +LE++ E E +G D +S + IE+LR +I
Sbjct: 131 NLNDRLASYLDKVRALEEANTELENKIREWYETRGTGTADASQSDYSKYYPLIEDLRNKI 190
Query: 176 FANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLE 235
+ ++ +A ++LQIDNA LA +DFR+KYE ELA+ Q VE+DI+GL +V+D+ +T LE
Sbjct: 191 ISASIGNAQLLLQIDNARLAAEDFRMKYENELALRQGVEADINGLRRVLDELTLTRTDLE 250
Query: 236 AEIKALKEKLLFMKKNHEEEVK 257
+I++L E+L +MKKNHE+E++
Sbjct: 251 MQIESLNEELAYMKKNHEDELQ 272
>gi|116488398 keratin 32 [Homo sapiens]
Length = 448
Score = 139 bits (351), Expect = 2e-33
Identities = 77/148 (52%), Positives = 102/148 (68%), Gaps = 5/148 (3%)
Query: 116 NEKETMQSLNDHLASYLDRVRSLDTKNWKLESQEHLEKKGPQVR----DWSHDFKTIENL 171
NEKETMQ LND LASYL RVR L+ +N +LES+ E QV D+ F+TIE L
Sbjct: 95 NEKETMQFLNDRLASYLTRVRQLEQENAELESRIQ-EASHSQVLTMTPDYQSHFRTIEEL 153
Query: 172 RAQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTW 231
+ +I ++A +V+ IDNA LA DDFR KYE ELAM Q VE+DI+GL +++DD +
Sbjct: 154 QQKILCTKAENARMVVNIDNAKLAADDFRAKYEAELAMRQLVEADINGLRRILDDLTLCK 213
Query: 232 LQLEAEIKALKEKLLFMKKNHEEEVKGL 259
LEA++++LKE+L+ +KKNHEEEV L
Sbjct: 214 ADLEAQVESLKEELMCLKKNHEEEVGSL 241
>gi|27894337 keratin 20 [Homo sapiens]
Length = 424
Score = 139 bits (349), Expect = 3e-33
Identities = 89/199 (44%), Positives = 119/199 (59%), Gaps = 13/199 (6%)
Query: 64 QLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKETMQS 123
Q + + SVY G G G RIS S T GS + GG G + NEK MQ+
Sbjct: 27 QRLGTTPSVYGGAGGRGIRISNSRHTVNYGSD--------LTGG--GDLFVGNEKMAMQN 76
Query: 124 LNDHLASYLDRVRSLDTKNWKLESQ--EHLEKKGPQV-RDWSHDFKTIENLRAQIFANTV 180
LND LASYL++VR+L+ N KLE Q + E P+ RD+S ++ IE LR+QI +
Sbjct: 77 LNDRLASYLEKVRTLEQSNSKLEVQIKQWYETNAPRAGRDYSAYYRQIEELRSQIKDAQL 136
Query: 181 DSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKA 240
+A VLQIDNA LA +DFR+KYETE + +VE+D+ GL+KV DD + LE +I+
Sbjct: 137 QNARCVLQIDNAKLAAEDFRLKYETERGIRLTVEADLQGLNKVFDDLTLHKTDLEIQIEE 196
Query: 241 LKEKLLFMKKNHEEEVKGL 259
L + L +KK H+EEV GL
Sbjct: 197 LNKDLALLKKEHQEEVDGL 215
>gi|14917117 keratin 33A [Homo sapiens]
Length = 404
Score = 136 bits (343), Expect = 2e-32
Identities = 73/147 (49%), Positives = 107/147 (72%), Gaps = 3/147 (2%)
Query: 116 NEKETMQSLNDHLASYLDRVRSLDTKNWKLES--QEHLEKKGPQV-RDWSHDFKTIENLR 172
+EKETMQ LND LASYL++VR L+ N +LE+ +E +++ P V + FKTIE L+
Sbjct: 55 SEKETMQFLNDRLASYLEKVRQLERDNAELENLIRERSQQQEPLVCASYQSYFKTIEELQ 114
Query: 173 AQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWL 232
+I + ++A +V+QIDNA LA DDFR KYETEL++ Q VESDI+GL +++D+ +
Sbjct: 115 QKILCSKSENARLVVQIDNAKLASDDFRTKYETELSLRQLVESDINGLRRILDELTLCRS 174
Query: 233 QLEAEIKALKEKLLFMKKNHEEEVKGL 259
LEA++++LKE+LL +K+NHE+EV L
Sbjct: 175 DLEAQVESLKEELLCLKQNHEQEVNTL 201
>gi|31559829 keratin 25 [Homo sapiens]
Length = 450
Score = 133 bits (334), Expect = 2e-31
Identities = 85/197 (43%), Positives = 116/197 (58%), Gaps = 17/197 (8%)
Query: 75 GIRGSGSRISMSCFTSFQGSMGSRGLPAV-----MAGGLAGMGVIQNEKETMQSLNDHLA 129
GI G GS S + S G G P G L+G NEK TMQ+LND LA
Sbjct: 37 GISGIGSGFSSAFGGSSSGGNTGGGNPCAGFTVNERGLLSG-----NEKVTMQNLNDRLA 91
Query: 130 SYLDRVRSLDTKNWKLESQEH--LEKKGPQV-----RDWSHDFKTIENLRAQIFANTVDS 182
SYLD V +L+ N LE + EK GP D+S F I++L+ QI A+T +
Sbjct: 92 SYLDSVHALEEANADLEQKIKGWYEKFGPGSCRGLDHDYSRYFPIIDDLKNQIIASTTSN 151
Query: 183 AHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKALK 242
A+ VLQIDNA L DDFR+KYE ELA+ QSVE+D++GL +V+D+ + LE + + L
Sbjct: 152 ANAVLQIDNARLTADDFRLKYENELALHQSVEADVNGLRRVLDEITLCRTDLEIQYETLS 211
Query: 243 EKLLFMKKNHEEEVKGL 259
E++ ++KKNH+EE++ L
Sbjct: 212 EEMTYLKKNHKEEMQVL 228
>gi|14917115 keratin 31 [Homo sapiens]
Length = 416
Score = 133 bits (334), Expect = 2e-31
Identities = 71/147 (48%), Positives = 105/147 (71%), Gaps = 3/147 (2%)
Query: 116 NEKETMQSLNDHLASYLDRVRSLDTKNWKLES--QEHLEKKGPQV-RDWSHDFKTIENLR 172
+EKETMQ LND LASYL++VR L+ N +LE+ +E +++ P + + FKTIE L+
Sbjct: 55 SEKETMQFLNDRLASYLEKVRQLERDNAELENLIRERSQQQEPLLCPSYQSYFKTIEELQ 114
Query: 173 AQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWL 232
+I ++A +V+QIDNA LA DDFR KY+TEL++ Q VESDI+GL +++D+ +
Sbjct: 115 QKILCTKSENARLVVQIDNAKLAADDFRTKYQTELSLRQLVESDINGLRRILDELTLCKS 174
Query: 233 QLEAEIKALKEKLLFMKKNHEEEVKGL 259
LEA++++LKE+LL +K NHE+EV L
Sbjct: 175 DLEAQVESLKEELLCLKSNHEQEVNTL 201
>gi|125490370 type I hair keratin KA36 [Homo sapiens]
Length = 431
Score = 130 bits (328), Expect = 9e-31
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 9/203 (4%)
Query: 57 PGTQLCAQLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQN 116
PGT CA S + RG + + C+ F GS S L A G+ N
Sbjct: 35 PGT--CATSRCQTPSFLSRSRGLTGCL-LPCY--FTGSCNSPCLVGNCAWCEDGV-FTSN 88
Query: 117 EKETMQSLNDHLASYLDRVRSLDTKNWKLES--QEHLEKKGPQV-RDWSHDFKTIENLRA 173
EKETMQ LND LASYL++VRSL+ N +LES QE E+ P V D+ F TIE+L+
Sbjct: 89 EKETMQFLNDRLASYLEKVRSLEETNAELESRIQEQCEQDIPMVCPDYQRYFNTIEDLQQ 148
Query: 174 QIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQ 233
+I +++ + +Q+DN LA DDF+ KYE+EL++ Q +E+DI LH ++++ +
Sbjct: 149 KILCTKAENSRLAVQLDNCKLATDDFKSKYESELSLRQLLEADISSLHGILEELTLCKSD 208
Query: 234 LEAEIKALKEKLLFMKKNHEEEV 256
LEA +++LKE LL +KKNHEEEV
Sbjct: 209 LEAHVESLKEDLLCLKKNHEEEV 231
>gi|31559815 keratin 26 [Homo sapiens]
Length = 468
Score = 129 bits (323), Expect = 3e-30
Identities = 85/197 (43%), Positives = 113/197 (57%), Gaps = 15/197 (7%)
Query: 78 GSGSRISMSCFTSFQGSMGS-----RGLPAVMAGGLAGMG---VIQNEKETMQSLNDHLA 129
GSG+R S SC S GS GL + G G + NEK TMQ+LND LA
Sbjct: 36 GSGARSSFSCTLEGISSGGSFCNSGGGLGSGACAGFLGNEHSLLSGNEKVTMQNLNDRLA 95
Query: 130 SYLDRVRSLDTKNWKLESQ--EHLEKKGP-----QVRDWSHDFKTIENLRAQIFANTVDS 182
SYLD V +L+ N LE + EK P D+S F IE+L+ QI + T+ +
Sbjct: 96 SYLDHVHALEEANADLEQKIKGRYEKCEPGSSREHDHDYSRYFSVIEDLKRQITSATICN 155
Query: 183 AHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKALK 242
A IVLQ DNA L DDFR+KYE ELA+ SVE+D GL +V+D+ + LE + + L
Sbjct: 156 ASIVLQNDNARLTADDFRLKYENELALHHSVEADTSGLRRVLDELTLCTTDLEIQCETLS 215
Query: 243 EKLLFMKKNHEEEVKGL 259
E+L ++KK+HEEE++ L
Sbjct: 216 EELTYLKKSHEEEMEVL 232
>gi|10337581 type I hair keratin 3B [Homo sapiens]
Length = 404
Score = 128 bits (322), Expect = 4e-30
Identities = 69/147 (46%), Positives = 105/147 (71%), Gaps = 3/147 (2%)
Query: 116 NEKETMQSLNDHLASYLDRVRSLDTKNWKLES--QEHLEKKGPQV-RDWSHDFKTIENLR 172
+EKETMQ LND LASYL++VR L+ N +LE+ +E +++ P + + FKTIE L+
Sbjct: 55 SEKETMQFLNDRLASYLEKVRQLERDNAELENLIRERSQQQEPLLCPSYQSYFKTIEELQ 114
Query: 173 AQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWL 232
+I + ++A +V+QIDNA LA DDFR KY+TE ++ Q VESDI+ L +++D+ +
Sbjct: 115 QKILCSKSENARLVVQIDNAKLAADDFRTKYQTEQSLRQLVESDINSLRRILDELTLCRS 174
Query: 233 QLEAEIKALKEKLLFMKKNHEEEVKGL 259
LEA++++LKE+LL +K+NHE+EV L
Sbjct: 175 DLEAQMESLKEELLSLKQNHEQEVNTL 201
>gi|14917119 keratin 34 [Homo sapiens]
Length = 436
Score = 123 bits (309), Expect = 1e-28
Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 3/147 (2%)
Query: 116 NEKETMQSLNDHLASYLDRVRSLDTKNWKLES--QEHLEKKGPQV-RDWSHDFKTIENLR 172
+EKETMQ LND LASYL++VR L+ N +LE QE +++ P + + FKTIE L+
Sbjct: 97 SEKETMQFLNDRLASYLEKVRQLERDNAELEKLIQERSQQQEPLLCPSYQSYFKTIEELQ 156
Query: 173 AQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWL 232
+I ++A +V+ IDNA LA DDFR KY+TE ++ VESDI+ + +++D+ +
Sbjct: 157 QKILCAKAENARLVVNIDNAKLASDDFRSKYQTEQSLRLLVESDINSIRRILDELTLCKS 216
Query: 233 QLEAEIKALKEKLLFMKKNHEEEVKGL 259
LE+++++L+E+L+ +KKNHEEEV L
Sbjct: 217 DLESQVESLREELICLKKNHEEEVNTL 243
>gi|148277620 type I hair keratin KA35 [Homo sapiens]
Length = 491
Score = 121 bits (303), Expect = 7e-28
Identities = 66/153 (43%), Positives = 100/153 (65%), Gaps = 3/153 (1%)
Query: 110 GMGVIQNEKETMQSLNDHLASYLDRVRSLDTKNWKLES--QEHLEKKGPQV-RDWSHDFK 166
G G+ NEKETMQ LN+ LA+YL +VR L+ +N +LES QE K+ P + D+ +
Sbjct: 89 GEGINSNEKETMQILNERLANYLQKVRMLERENAELESKIQEESNKELPVLCPDYLSYYT 148
Query: 167 TIENLRAQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDD 226
TIE L+ +I +++ +V QIDN L DD R KYE E+++ Q VESD +GL ++++
Sbjct: 149 TIEELQQKILCTKAENSRLVSQIDNTKLTADDLRAKYEAEVSLRQLVESDANGLKQILNV 208
Query: 227 TNVTWLQLEAEIKALKEKLLFMKKNHEEEVKGL 259
+ LEA++++LKE+LL +K NH+EE+ L
Sbjct: 209 LTLGKADLEAQVQSLKEELLCLKNNHKEEINSL 241
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 118 bits (296), Expect = 4e-27
Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 8/186 (4%)
Query: 78 GSGSRISMSCFTSFQGSMGSRGLPAVMAGGLAGMGVIQNEKETMQSLNDHLASYLDRVRS 137
GSG + F G G G AGG G + NEK TMQ LN LASYLD+V++
Sbjct: 118 GSGGGFGGGYGSGFGGFGGFGG----GAGGGDGGILTANEKSTMQELNSRLASYLDKVQA 173
Query: 138 LDTKNWKLES--QEHLEKKGPQV--RDWSHDFKTIENLRAQIFANTVDSAHIVLQIDNAC 193
L+ N LE+ Q+ +KKGP +++S + TI++L+ QI TV + +L IDN
Sbjct: 174 LEEANNDLENKIQDWYDKKGPAAIQKNYSPYYNTIDDLKDQIVDLTVGNNKTLLDIDNTR 233
Query: 194 LAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWLQLEAEIKALKEKLLFMKKNHE 253
+ DDFR+K+E E + Q V++DI+GL +V+D+ + LE + + L+E+L+ +KKNH+
Sbjct: 234 MTLDDFRIKFEMEQNLRQGVDADINGLRQVLDNLTMEKSDLEMQYETLQEELMALKKNHK 293
Query: 254 EEVKGL 259
EE+ L
Sbjct: 294 EEMSQL 299
>gi|15431318 keratin 38 [Homo sapiens]
Length = 456
Score = 117 bits (293), Expect = 1e-26
Identities = 64/145 (44%), Positives = 96/145 (66%), Gaps = 3/145 (2%)
Query: 116 NEKETMQSLNDHLASYLDRVRSLDTKNWKLESQEHLEKKGPQVR---DWSHDFKTIENLR 172
+EKETMQ LND LA+YL++VR L+ +N +LE+ K + D+ F TIE L+
Sbjct: 103 HEKETMQFLNDRLANYLEKVRQLEQENAELEATLLERSKCHESTVCPDYQSYFHTIEELQ 162
Query: 173 AQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWL 232
+I + ++A +++QIDNA LA DDFR+K E+E ++ Q VE+D G K++DD +
Sbjct: 163 QKILCSKAENARLIVQIDNAKLAADDFRIKLESERSLRQLVEADKCGTQKLLDDATLAKA 222
Query: 233 QLEAEIKALKEKLLFMKKNHEEEVK 257
LEA+ ++LKE+ L +K NHE+EVK
Sbjct: 223 DLEAQQESLKEEQLSLKSNHEQEVK 247
>gi|55770882 keratin 37 [Homo sapiens]
Length = 449
Score = 117 bits (292), Expect = 1e-26
Identities = 63/145 (43%), Positives = 97/145 (66%), Gaps = 3/145 (2%)
Query: 116 NEKETMQSLNDHLASYLDRVRSLDTKNWKLESQEHLEKKGPQVR---DWSHDFKTIENLR 172
+EKETM+ LND LA+YL++VR L+ +N +LE+ K + D+ F+TIE L+
Sbjct: 103 HEKETMKFLNDRLANYLEKVRQLEQENAELETTLLERSKCHESTVCPDYQSYFRTIEELQ 162
Query: 173 AQIFANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIHGLHKVIDDTNVTWL 232
+I + ++A +++QIDNA LA DDFR+K E+E ++ Q VE+D G K++DD +
Sbjct: 163 QKILCSKAENARLIVQIDNAKLAADDFRIKLESERSLHQLVEADKCGTQKLLDDATLAKA 222
Query: 233 QLEAEIKALKEKLLFMKKNHEEEVK 257
LEA+ ++LKE+ L +K NHE+EVK
Sbjct: 223 DLEAQQESLKEEQLSLKSNHEQEVK 247
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,384,987
Number of Sequences: 37866
Number of extensions: 481998
Number of successful extensions: 2068
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1833
Number of HSP's gapped (non-prelim): 180
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.