Search of human proteins with 27437030

Search of human proteins with 27437030

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27437030 colony stimulating factor 2 precursor [Homo
sapiens]
         (144 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27437030 colony stimulating factor 2 precursor [Homo sapiens]      296   4e-81
gi|23397648 phosphatidylinositol glycan anchor biosynthesis, cla...    32   0.24 
gi|199562283 retrotransposon-like 1 [Homo sapiens]                     30   0.54 
gi|6042196 cathepsin F [Homo sapiens]                                  30   0.91 
gi|31542634 filamin A interacting protein 1 [Homo sapiens]             29   1.2  
gi|110611156 laminin, gamma 3 precursor [Homo sapiens]                 28   2.0  
gi|226492892 coiled-coil domain containing 105 [Homo sapiens]          28   3.5  
gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]          28   3.5  
gi|224494026 tumor necrosis factor receptor superfamily, member ...    27   4.5  
gi|224494019 tumor necrosis factor receptor superfamily, member ...    27   4.5  
gi|38261962 activating transcription factor 7 interacting protei...    27   5.9  
gi|166235184 KIAA1274 [Homo sapiens]                                   27   5.9  
gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [H...    27   5.9  
gi|47271477 scavenger receptor class A, member 5 [Homo sapiens]        27   5.9  
gi|38045917 phosphatidylinositol glycan anchor biosynthesis, cla...    27   5.9  
gi|27477095 nuclear receptor binding SET domain protein 1 isofor...    27   7.7  
gi|19923586 nuclear receptor binding SET domain protein 1 isofor...    27   7.7  
gi|215599324 coiled-coil domain containing 114 isoform 2 [Homo s...    27   7.7  
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]              27   7.7  
gi|62952502 cytochrome P450, family 26, subfamily C, polypeptide...    27   7.7  

>gi|27437030 colony stimulating factor 2 precursor [Homo sapiens]
          Length = 144

 Score =  296 bits (758), Expect = 4e-81
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI 60
           MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI
Sbjct: 1   MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI 60

Query: 61  SEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF 120
           SEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF
Sbjct: 61  SEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF 120

Query: 121 ESFKENLKDFLLVIPFDCWEPVQE 144
           ESFKENLKDFLLVIPFDCWEPVQE
Sbjct: 121 ESFKENLKDFLLVIPFDCWEPVQE 144


>gi|23397648 phosphatidylinositol glycan anchor biosynthesis, class
           O isoform 1 [Homo sapiens]
          Length = 1089

 Score = 31.6 bits (70), Expect = 0.24
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 1   MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNA 35
           ++LQS LLL  +A  I  P  +P P T PW+ V+A
Sbjct: 862 LFLQSFLLLHLLAAGI--PVTTPGPFTVPWQAVSA 894


>gi|199562283 retrotransposon-like 1 [Homo sapiens]
          Length = 1358

 Score = 30.4 bits (67), Expect = 0.54
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 25  PSTQPWEHVNAIQEARRLLNLS----RDTAAEMNETVEVISEMFDLQEPTCLQTRLEL 78
           PST PWE V A  + R  L       +D      + +++I E+FD        T+LEL
Sbjct: 611 PSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGAEWFTKLEL 668


>gi|6042196 cathepsin F [Homo sapiens]
          Length = 484

 Score = 29.6 bits (65), Expect = 0.91
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 2  WLQSLLLLGTVACSISAPARSPSPSTQPW 30
          WLQ L LLG +  +++APA+  + S Q W
Sbjct: 4  WLQLLSLLGLLPGAVAAPAQPRAASFQAW 32


>gi|31542634 filamin A interacting protein 1 [Homo sapiens]
          Length = 1213

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 20  ARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVISEMFDLQEPTCLQTRLELY 79
           ++S S  TQ   H+N  +E     NL++D    +NE   V S + +L+   C ++RLE  
Sbjct: 443 SKSKSECTQL--HLNLEKEK----NLTKDL---LNELEVVKSRVKELE---CSESRLEKA 490

Query: 80  KQGLRGSLTKLKGPLTMMASHYK 102
           +  L+  LTKLK    M+    K
Sbjct: 491 ELSLKDDLTKLKSFTVMLVDERK 513


>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
          Length = 1575

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4    QSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNET 56
            + +L    +  S+  P   PS  T+ W H+    EAR L    RDTA ++  T
Sbjct: 1127 EEILHAAAILASLEIPQEGPSQPTK-WSHLAT--EARALARSHRDTATKIAAT 1176


>gi|226492892 coiled-coil domain containing 105 [Homo sapiens]
          Length = 499

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 14/66 (21%)

Query: 20  ARSPSPSTQ-----PWEHVN--------AIQEARRLLNLSRDTAAEM-NETVEVISEMFD 65
           +R+P+P TQ     P + V         A+ EA+RLL  S+DT  EM    V+V  +   
Sbjct: 268 SRAPTPRTQGQKTPPPDPVGTYNPACALALNEAKRLLVESKDTLVEMAKNEVDVREQQLQ 327

Query: 66  LQEPTC 71
           + +  C
Sbjct: 328 ISDRVC 333


>gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]
          Length = 4646

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 76   LELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF-ESFKENLKDF 130
            L  + Q L  ++T+    ++      +QH   T  TS A   IT+ +S K  +K F
Sbjct: 1128 LSKFGQMLGSNMTEFHSQISKSRQELEQHSVDTASTSDAVTFITYVQSLKRKIKQF 1183


>gi|224494026 tumor necrosis factor receptor superfamily, member 10b
           isoform 2 precursor [Homo sapiens]
          Length = 411

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 121 ESFKENLKDFLLVIPFDCWEPV 142
           E+ ++   DF  ++PFD WEP+
Sbjct: 307 ETLRQCFDDFADLVPFDSWEPL 328


>gi|224494019 tumor necrosis factor receptor superfamily, member 10b
           isoform 1 precursor [Homo sapiens]
          Length = 440

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 121 ESFKENLKDFLLVIPFDCWEPV 142
           E+ ++   DF  ++PFD WEP+
Sbjct: 336 ETLRQCFDDFADLVPFDSWEPL 357


>gi|38261962 activating transcription factor 7 interacting protein
           [Homo sapiens]
          Length = 1270

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 23  PSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVISEMFDLQEPTCLQTRLELYKQG 82
           P+P   P + VN +     +   +  T  +M E+   +SE      P   QT +      
Sbjct: 668 PNPPVSPGKTVNDVNSNNNMSYRNAGTVRQMLESKRNVSE----SAPPSFQTPVNTV--- 720

Query: 83  LRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQII 118
              S T L  P  +++S  K   P T  +  AT ++
Sbjct: 721 ---SSTNLVTPPAVVSSQPKLQTPVTSGSLTATSVL 753


>gi|166235184 KIAA1274 [Homo sapiens]
          Length = 856

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 17/68 (25%), Positives = 28/68 (41%)

Query: 1   MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI 60
           M L +L+LL     +    A        P E    IQ   R++   R    E++  +   
Sbjct: 323 MVLGTLILLHRSGTTSQPEAAPTQAKPLPMEQFQVIQSFLRMVPQGRRMVEEVDRAITAC 382

Query: 61  SEMFDLQE 68
           +E+ DL+E
Sbjct: 383 AELHDLKE 390


>gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [Homo
           sapiens]
          Length = 1043

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 25  PSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVISEMFDLQEPT 70
           P  Q W+ V  I +   L +L     AEM E V+      +LQ+PT
Sbjct: 77  PKGQAWKVVLGIFQTMNLTSLCEKVRAEMKENVQT----QELQDPT 118


>gi|47271477 scavenger receptor class A, member 5 [Homo sapiens]
          Length = 495

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 6   LLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLN---LSRDTAAEMNETVEVISE 62
           L+L+G    ++S P  SP        +VN + E+ R L    L     A++ E V  + +
Sbjct: 71  LILVGIFILAVSRPRSSPDDLKALTRNVNRLNESFRDLQLRLLQAPLQADLTEQVWKVQD 130

Query: 63  MFDLQEPTCLQTRLELYKQGLRGSLTKLKGPL 94
               Q  + L          L G++ +L+G L
Sbjct: 131 ALQNQSDSLL---------ALAGAVQRLEGAL 153


>gi|38045917 phosphatidylinositol glycan anchor biosynthesis, class
           O isoform 2 [Homo sapiens]
          Length = 672

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 5   SLLLLGTVACSISAPARSPSPSTQPWEHVNA 35
           S LLL  +A  I  P  +P P T PW+ V+A
Sbjct: 449 SFLLLHLLAAGI--PVTTPGPFTVPWQAVSA 477


>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
            [Homo sapiens]
          Length = 2427

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 10   GTVACSISAPARSPSPSTQPWEHVNAIQEARRL 42
            G V+  +    ++ +PS  PW+ V ++ +AR L
Sbjct: 2238 GCVSDPLQTSGKAAAPSEDPWQAVKSLTQARLL 2270


>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
            [Homo sapiens]
          Length = 2696

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 10   GTVACSISAPARSPSPSTQPWEHVNAIQEARRL 42
            G V+  +    ++ +PS  PW+ V ++ +AR L
Sbjct: 2507 GCVSDPLQTSGKAAAPSEDPWQAVKSLTQARLL 2539


>gi|215599324 coiled-coil domain containing 114 isoform 2 [Homo
           sapiens]
          Length = 670

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 31  EHVNAIQEARRLLNLSRDTAAEMNETVE-VISEMFDLQEPTCLQTRLELYKQGLRGSLTK 89
           E +  +QEA      S+D    + E  + V+ +  D         RLE   Q +RG L K
Sbjct: 316 EEIKEMQEALVSARASKDDQHLLQEQQQKVLQQRMDKVHSEA--ERLEARFQDVRGQLEK 373

Query: 90  LKGPLTMMASHYKQHC 105
           LK  + ++ +  K HC
Sbjct: 374 LKADIQLLFT--KAHC 387


>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
          Length = 841

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 18/68 (26%), Positives = 26/68 (38%)

Query: 21  RSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVISEMFDLQEPTCLQTRLELYK 80
           R P P    W+ + A+Q +  L  LS           EV++          L T   +  
Sbjct: 387 RPPGPRNTLWQELPAVQASGLLDTLSPQERRMQESLFEVVTSEASYLRSLRLLTDTFVLS 446

Query: 81  QGLRGSLT 88
           Q LR +LT
Sbjct: 447 QALRDTLT 454


>gi|62952502 cytochrome P450, family 26, subfamily C, polypeptide 1
           [Homo sapiens]
          Length = 522

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 110 ETSCATQIITFESFKENLKDFLLVIPF 136
           E  CAT   TFE   ENL    L +PF
Sbjct: 204 EAQCATLARTFEQLVENLFSLPLDVPF 230


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,886,380
Number of Sequences: 37866
Number of extensions: 236269
Number of successful extensions: 887
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 20
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.