Guide to the Human Genome
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Name: CSF2 Sequence: fasta or formatted (144aa) NCBI GI: 27437030
Description:

colony stimulating factor 2 precursor

Referenced in:

Ets Family
Interleukins and Their Receptors
Macrophages and Monocytes
Hematopoiesis and Erythrocytes
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          9           2
 C cysteine            3.5          5           1
 D aspartate           2.8          4           1
 E glutamate           9.0         13           1
 F phenylalanine       3.5          5           1
 G glycine             2.8          4           1
 H histidine           2.1          3           1
 I isoleucine          4.2          6           2
 K lysine              4.2          6           1
 L leucine            13.2         19           4
 M methionine          3.5          5           2
 N asparagine          2.8          4           1
 P proline             7.6         11           2
 Q glutamine           6.2          9           1
 R arginine            4.2          6           2
 S serine              8.3         12           1
 T threonine           8.3         12           1
 V valine              4.2          6           1
 W tryptophan          2.1          3           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   colony stimulating factor 2 precursor 
PIGO                  0.026   phosphatidylinositol glycan anchor biosynthesis, cla...
RTL1                  0.018   retrotransposon-like 1 
CTSF                  0.018   cathepsin F 
FILIP1                0.015   filamin A interacting protein 1 
LAMC3                 0.011   laminin, gamma 3 precursor 
CCDC105               0.011   coiled-coil domain containing 105 
DYNC1H1               0.011   cytoplasmic dynein 1 heavy chain 1 
TNFRSF10B             0.007   tumor necrosis factor receptor superfamily, member ...
TNFRSF10B             0.007   tumor necrosis factor receptor superfamily, member ...
ATF7IP                0.007   activating transcription factor 7 interacting protei...
KIAA1274              0.007   KIAA1274 
NLRP13                0.007   NACHT, leucine rich repeat and PYD containing 13 [H...
SCARA5                0.007   scavenger receptor class A, member 5 
PIGO                  0.007   phosphatidylinositol glycan anchor biosynthesis, cla...
NSD1                  0.007   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.007   nuclear receptor binding SET domain protein 1 isofor...
CCDC114               0.007   coiled-coil domain containing 114 isoform 2 
ARHGEF15              0.007   Rho guanine exchange factor 15 
CYP26C1               0.007   cytochrome P450, family 26, subfamily C, polypeptide...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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