Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 26051250
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens]
(330 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens] 657 0.0
gi|4507599 tumor necrosis factor ligand superfamily, member 13 i... 333 1e-91
gi|4507597 tumor necrosis factor (ligand) superfamily, member 12... 329 2e-90
gi|26051248 tumor necrosis factor ligand superfamily, member 13 ... 326 2e-89
gi|26051246 tumor necrosis factor ligand superfamily, member 13 ... 290 1e-78
gi|5730097 tumor necrosis factor superfamily, member 13b isoform... 89 5e-18
gi|224548983 tumor necrosis factor superfamily, member 13b isofo... 83 3e-16
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 48 1e-05
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 47 2e-05
gi|25952111 tumor necrosis factor alpha [Homo sapiens] 37 0.024
gi|113430055 PREDICTED: similar to cancer/testis antigen family ... 34 0.21
gi|148539870 histone deacetylase 7 isoform d [Homo sapiens] 33 0.35
gi|169234807 histone deacetylase 7 isoform a [Homo sapiens] 33 0.35
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 33 0.46
gi|121949802 cancer/testis antigen family 47, member A1 [Homo sa... 31 1.7
gi|121949798 cancer/testis antigen family 47, member A2 [Homo sa... 31 1.7
gi|121949773 cancer/testis antigen family 47, member A3 [Homo sa... 31 1.7
gi|121949771 cancer/testis antigen family 47, member A4 [Homo sa... 31 1.7
gi|121949796 cancer/testis antigen family 47, member A5 [Homo sa... 31 1.7
gi|121949794 cancer/testis antigen family 47, member A6 [Homo sa... 31 1.7
gi|121949792 cancer/testis antigen family 47, member A7 [Homo sa... 31 1.7
gi|121949790 cancer/testis antigen family 47, member A8 [Homo sa... 31 1.7
gi|121949788 cancer/testis antigen family 47, member A9 [Homo sa... 31 1.7
gi|121949786 cancer/testis antigen family 47, member A10 [Homo s... 31 1.7
gi|6806893 lymphotoxin alpha precursor [Homo sapiens] 31 1.7
gi|229092381 lymphotoxin alpha precursor [Homo sapiens] 31 1.7
gi|122114660 cancer/testis antigen family 47, member A11 [Homo s... 31 1.7
gi|51317366 myosin XVIIIB [Homo sapiens] 31 1.7
gi|239753489 PREDICTED: hypothetical protein [Homo sapiens] 30 2.3
gi|239748065 PREDICTED: hypothetical protein XP_002346524 [Homo ... 30 2.3
>gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens]
Length = 330
Score = 657 bits (1694), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 60
MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
Sbjct: 1 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 60
Query: 61 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 120
VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
Sbjct: 61 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 120
Query: 121 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQSSDALEAWENGERS 180
GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQSSDALEAWENGERS
Sbjct: 121 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQSSDALEAWENGERS 180
Query: 181 RKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDA 240
RKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDA
Sbjct: 181 RKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDA 240
Query: 241 GVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLH 300
GVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLH
Sbjct: 241 GVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLH 300
Query: 301 QGDILSVIIPRARAKLNLSPHGTFLGFVKL 330
QGDILSVIIPRARAKLNLSPHGTFLGFVKL
Sbjct: 301 QGDILSVIIPRARAKLNLSPHGTFLGFVKL 330
>gi|4507599 tumor necrosis factor ligand superfamily, member 13
isoform alpha proprotein [Homo sapiens]
Length = 250
Score = 333 bits (855), Expect = 1e-91
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 166 QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG 225
QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG
Sbjct: 86 QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG 145
Query: 226 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 285
RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD
Sbjct: 146 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 205
Query: 286 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 330
RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL
Sbjct: 206 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 250
>gi|4507597 tumor necrosis factor (ligand) superfamily, member 12
precursor [Homo sapiens]
Length = 249
Score = 329 bits (844), Expect = 2e-90
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 60
MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
Sbjct: 1 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 60
Query: 61 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 120
VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
Sbjct: 61 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 120
Query: 121 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQ 166
GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQ
Sbjct: 121 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQ 166
>gi|26051248 tumor necrosis factor ligand superfamily, member 13
isoform gamma proprotein [Homo sapiens]
Length = 247
Score = 326 bits (836), Expect = 2e-89
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 166 QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG 225
QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG
Sbjct: 86 QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG 145
Query: 226 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 285
RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD
Sbjct: 146 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 205
Query: 286 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLG 326
RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLG
Sbjct: 206 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLG 246
>gi|26051246 tumor necrosis factor ligand superfamily, member 13
isoform beta proprotein [Homo sapiens]
Length = 234
Score = 290 bits (742), Expect = 1e-78
Identities = 148/165 (89%), Positives = 149/165 (90%), Gaps = 16/165 (9%)
Query: 166 QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG 225
QSSDALEAWENGERSRKRRAVLTQKQK +DSDVTEVMWQPALRRG
Sbjct: 86 QSSDALEAWENGERSRKRRAVLTQKQK----------------NDSDVTEVMWQPALRRG 129
Query: 226 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 285
RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD
Sbjct: 130 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 189
Query: 286 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 330
RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL
Sbjct: 190 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 234
>gi|5730097 tumor necrosis factor superfamily, member 13b isoform 1
[Homo sapiens]
Length = 285
Score = 89.0 bits (219), Expect = 5e-18
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 9/162 (5%)
Query: 176 NGERSRKRRAVLTQKQKKQHSVLHLVPINATSK-DDSDVTEVMWQPALRRGRGLQAQGYG 234
+ + SR +RAV ++ L L+ + T T V W + +RG L+ +
Sbjct: 125 SSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENK 184
Query: 235 VRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE------GQGRQETLFRCIRSMPSHPDRAY 288
+ +++ G + +Y QVL+ D T+ MG ++ R+ + TLFRCI++MP
Sbjct: 185 ILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPN-- 242
Query: 289 NSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 330
NSCYSAG+ L +GD L + IPR A+++L TF G +KL
Sbjct: 243 NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
>gi|224548983 tumor necrosis factor superfamily, member 13b isoform
2 [Homo sapiens]
Length = 266
Score = 83.2 bits (204), Expect = 3e-16
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 208 KDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE-- 265
++ T V W + +RG L+ + + +++ G + +Y QVL+ D T+ MG ++ R+
Sbjct: 139 EETGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKV 198
Query: 266 ----GQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPH 321
+ TLFRCI++MP NSCYSAG+ L +GD L + IPR A+++L
Sbjct: 199 HVFGDELSLVTLFRCIQNMPETLPN--NSCYSAGIAKLEEGDELQLAIPRENAQISLDGD 256
Query: 322 GTFLGFVKL 330
TF G +KL
Sbjct: 257 VTFFGALKL 265
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 48.1 bits (113), Expect = 1e-05
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 241 GVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLH 300
G Y +YSQV + FT S E ++ +C RS+ + YN+CY+AGV L
Sbjct: 299 GTYFIYSQVEVYYINFT--DFASYEVVVDEKPFLQCTRSIETGKTN-YNTCYTAGVCLLK 355
Query: 301 QGDILSVIIPRARAKLNLSPHGTFLGFVKL 330
++V + A +N+S H TF G ++L
Sbjct: 356 ARQKIAVKMVHADISINMSKHTTFFGAIRL 385
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 47.4 bits (111), Expect = 2e-05
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 241 GVYLLYSQVLFQDVT-FTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHL 299
G Y +YSQV + + T F +VV E + +C RS+ + YN+CY+AGV L
Sbjct: 299 GTYFIYSQVYYINFTDFASYEVVVDE-----KPFLQCTRSIETGKTN-YNTCYTAGVCLL 352
Query: 300 HQGDILSVIIPRARAKLNLSPHGTFLGFVKL 330
++V + A +N+S H TF G ++L
Sbjct: 353 KARQKIAVKMVHADISINMSKHTTFFGAIRL 383
>gi|25952111 tumor necrosis factor alpha [Homo sapiens]
Length = 233
Score = 37.0 bits (84), Expect = 0.024
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 223 RRGRGLQAQGYGVR-----IQDAGVYLLYSQVLFQD---------VTFTMGQV-VSREGQ 267
RR L A G +R + G+YL+YSQVLF+ +T T+ ++ VS + +
Sbjct: 107 RRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTK 166
Query: 268 GRQETLFR--CIRSMPSHPDRA--YNSCYSAGVFHLHQGDILSVIIPR 311
+ + C R P + Y Y GVF L +GD LS I R
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINR 214
>gi|113430055 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 1 [Homo sapiens]
Length = 284
Score = 33.9 bits (76), Expect = 0.21
Identities = 33/107 (30%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 1 MAARRSQRRRGRRGEPGTA----LLVPLALGLGLALA---CLGLLLAVV---------SL 44
M R RRR G+ LLV LG+G A LGLL L
Sbjct: 137 MRGGRLMRRRRTAAPSGSEEPRLLLVHERLGVGAAGPEGEGLGLLQEAALVPEPEVPADL 196
Query: 45 GSRASLSAQEPAQEELVAEEDQDPSELNPQTEESQDPAPFLNRLVRP 91
A A+EPA+EEL E ++P++ P EE P P
Sbjct: 197 AEMAREPAEEPAEEELAEEAAEEPAKEEPAAEEESAEEPATEEAAAP 243
>gi|148539870 histone deacetylase 7 isoform d [Homo sapiens]
Length = 954
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 7 QRRRGR--RGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEELVAEE 64
QR GR RG G +L+PLA G L+ A S + ASLSA EPA + V
Sbjct: 456 QRLAGRLPRGSTGDTVLLPLAQGGHRPLS-----RAQSSPAAPASLSAPEPASQARVLSS 510
Query: 65 DQDPSELNPQT 75
+ P+ P T
Sbjct: 511 SETPARTLPFT 521
>gi|169234807 histone deacetylase 7 isoform a [Homo sapiens]
Length = 991
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 7 QRRRGR--RGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEELVAEE 64
QR GR RG G +L+PLA G L+ A S + ASLSA EPA + V
Sbjct: 493 QRLAGRLPRGSTGDTVLLPLAQGGHRPLS-----RAQSSPAAPASLSAPEPASQARVLSS 547
Query: 65 DQDPSELNPQT 75
+ P+ P T
Sbjct: 548 SETPARTLPFT 558
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 32.7 bits (73), Expect = 0.46
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 173 AWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQG 232
AW ER +K + + T K+ + H+V + ++D + E + + +G Q
Sbjct: 820 AWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSS 879
Query: 233 YGVRIQDAGVYLLY-----SQVLFQDVTFTMGQVVS 263
GV + D + +LY S+ F+D + Q VS
Sbjct: 880 IGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVS 915
>gi|121949802 cancer/testis antigen family 47, member A1 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949798 cancer/testis antigen family 47, member A2 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949773 cancer/testis antigen family 47, member A3 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949771 cancer/testis antigen family 47, member A4 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949796 cancer/testis antigen family 47, member A5 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949794 cancer/testis antigen family 47, member A6 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949792 cancer/testis antigen family 47, member A7 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949790 cancer/testis antigen family 47, member A8 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949788 cancer/testis antigen family 47, member A9 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949786 cancer/testis antigen family 47, member A10 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|6806893 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 30.8 bits (68), Expect = 1.7
Identities = 38/157 (24%), Positives = 54/157 (34%), Gaps = 27/157 (17%)
Query: 193 KQHSVLHLV-----PINATSKDDSDVTEVMWQPALRRG---RGLQAQGYGVRIQDAGVYL 244
+QH +HL P D S ++W+ R G + + +G+Y
Sbjct: 49 RQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYF 108
Query: 245 LYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSM------------PSHPDRAYNSCY 292
+YSQV+F ++ S + LF P + +S Y
Sbjct: 109 VYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMY 168
Query: 293 SAGVFHLHQGDILSVI---IPRARAKLNLSPHGTFLG 326
F L QGD LS IP L LSP F G
Sbjct: 169 HGAAFQLTQGDQLSTHTDGIPH----LVLSPSTVFFG 201
>gi|229092381 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 30.8 bits (68), Expect = 1.7
Identities = 38/157 (24%), Positives = 54/157 (34%), Gaps = 27/157 (17%)
Query: 193 KQHSVLHLV-----PINATSKDDSDVTEVMWQPALRRG---RGLQAQGYGVRIQDAGVYL 244
+QH +HL P D S ++W+ R G + + +G+Y
Sbjct: 49 RQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYF 108
Query: 245 LYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSM------------PSHPDRAYNSCY 292
+YSQV+F ++ S + LF P + +S Y
Sbjct: 109 VYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMY 168
Query: 293 SAGVFHLHQGDILSVI---IPRARAKLNLSPHGTFLG 326
F L QGD LS IP L LSP F G
Sbjct: 169 HGAAFQLTQGDQLSTHTDGIPH----LVLSPSTVFFG 201
>gi|122114660 cancer/testis antigen family 47, member A11 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 49 SLSAQEPAQEELVAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIA 108
++S++ E+ + EED+ P +P S P F+ +LVR K + R + A+A
Sbjct: 2 AISSRLALWEQKIREEDKSPPPSSPPPLFSVIPGGFIKQLVRGTEKEAKEARQRKQLAVA 61
Query: 109 A 109
+
Sbjct: 62 S 62
>gi|239753489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 225 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 281
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
Query: 282 SHP 284
HP
Sbjct: 100 GHP 102
>gi|239748065 PREDICTED: hypothetical protein XP_002346524 [Homo
sapiens]
Length = 104
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 225 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 281
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
Query: 282 SHP 284
HP
Sbjct: 100 GHP 102
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,828,254
Number of Sequences: 37866
Number of extensions: 597448
Number of successful extensions: 2786
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2718
Number of HSP's gapped (non-prelim): 95
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.